Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04045

Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04030 and MMJJ_RS04035 are separated by 7 nucleotidesMMJJ_RS04035 and MMJJ_RS04040 are separated by 57 nucleotidesMMJJ_RS04040 and MMJJ_RS04045 are separated by 37 nucleotidesMMJJ_RS04045 and MMJJ_RS04050 overlap by 8 nucleotidesMMJJ_RS04050 and MMJJ_RS04055 are separated by 12 nucleotidesMMJJ_RS04055 and MMJJ_RS04060 are separated by 9 nucleotides MMJJ_RS04030: MMJJ_RS04030 - rRNA maturation protein, at 750,846 to 751,340 _RS04030 MMJJ_RS04035: MMJJ_RS04035 - hypothetical protein, at 751,348 to 751,599 _RS04035 MMJJ_RS04040: MMJJ_RS04040 - prefoldin subunit beta, at 751,657 to 751,998 _RS04040 MMJJ_RS04045: MMJJ_RS04045 - DHH family phosphoesterase, at 752,036 to 753,052 _RS04045 MMJJ_RS04050: MMJJ_RS04050 - dihydroneopterin aldolase family protein, at 753,045 to 753,419 _RS04050 MMJJ_RS04055: MMJJ_RS04055 - hypothetical protein, at 753,432 to 753,701 _RS04055 MMJJ_RS04060: MMJJ_RS04060 - DUF2341 domain-containing protein, at 753,711 to 755,501 _RS04060 Position (kb) 752 753 754Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 751.200 kb on - strand, within MMJJ_RS04030at 751.230 kb on + strand, within MMJJ_RS04030at 751.310 kb on + strandat 751.573 kb on + strand, within MMJJ_RS04035at 751.574 kb on - strandat 751.575 kb on + strandat 751.575 kb on + strandat 751.575 kb on + strandat 751.576 kb on - strandat 751.577 kb on + strandat 751.577 kb on + strandat 751.578 kb on - strandat 751.578 kb on - strandat 751.579 kb on + strandat 751.598 kb on + strandat 751.600 kb on - strandat 751.601 kb on + strandat 751.633 kb on - strandat 751.633 kb on - strandat 751.727 kb on - strand, within MMJJ_RS04040at 751.728 kb on + strand, within MMJJ_RS04040at 751.819 kb on + strand, within MMJJ_RS04040at 751.819 kb on + strand, within MMJJ_RS04040at 751.887 kb on + strand, within MMJJ_RS04040at 751.908 kb on + strand, within MMJJ_RS04040at 751.908 kb on + strand, within MMJJ_RS04040at 751.911 kb on - strand, within MMJJ_RS04040at 751.911 kb on - strand, within MMJJ_RS04040at 751.912 kb on + strand, within MMJJ_RS04040at 751.912 kb on + strand, within MMJJ_RS04040at 751.912 kb on + strand, within MMJJ_RS04040at 751.949 kb on + strand, within MMJJ_RS04040at 751.958 kb on - strand, within MMJJ_RS04040at 751.980 kb on + strandat 752.013 kb on + strandat 752.014 kb on - strandat 752.087 kb on + strandat 752.088 kb on - strandat 752.089 kb on + strandat 752.094 kb on - strandat 752.301 kb on - strand, within MMJJ_RS04045at 752.320 kb on + strand, within MMJJ_RS04045at 752.350 kb on + strand, within MMJJ_RS04045at 752.373 kb on - strand, within MMJJ_RS04045at 752.373 kb on - strand, within MMJJ_RS04045at 752.398 kb on - strand, within MMJJ_RS04045at 752.401 kb on + strand, within MMJJ_RS04045at 752.418 kb on + strand, within MMJJ_RS04045at 752.420 kb on + strand, within MMJJ_RS04045at 752.420 kb on + strand, within MMJJ_RS04045at 752.420 kb on + strand, within MMJJ_RS04045at 752.458 kb on + strand, within MMJJ_RS04045at 752.524 kb on - strand, within MMJJ_RS04045at 752.532 kb on + strand, within MMJJ_RS04045at 752.573 kb on + strand, within MMJJ_RS04045at 752.601 kb on - strand, within MMJJ_RS04045at 752.602 kb on + strand, within MMJJ_RS04045at 752.617 kb on + strand, within MMJJ_RS04045at 752.628 kb on - strand, within MMJJ_RS04045at 752.668 kb on + strand, within MMJJ_RS04045at 752.692 kb on + strand, within MMJJ_RS04045at 752.708 kb on - strand, within MMJJ_RS04045at 752.708 kb on - strand, within MMJJ_RS04045at 752.709 kb on + strand, within MMJJ_RS04045at 752.709 kb on + strand, within MMJJ_RS04045at 752.713 kb on - strand, within MMJJ_RS04045at 752.721 kb on - strand, within MMJJ_RS04045at 752.767 kb on + strand, within MMJJ_RS04045at 752.824 kb on - strand, within MMJJ_RS04045at 752.829 kb on - strand, within MMJJ_RS04045at 752.829 kb on - strand, within MMJJ_RS04045at 752.944 kb on + strand, within MMJJ_RS04045at 752.971 kb on - strandat 753.031 kb on + strandat 753.101 kb on + strand, within MMJJ_RS04050at 753.292 kb on + strand, within MMJJ_RS04050at 753.367 kb on - strand, within MMJJ_RS04050at 753.403 kb on + strandat 753.530 kb on - strand, within MMJJ_RS04055at 753.541 kb on - strand, within MMJJ_RS04055at 753.542 kb on + strand, within MMJJ_RS04055at 753.544 kb on - strand, within MMJJ_RS04055at 753.544 kb on - strand, within MMJJ_RS04055at 753.544 kb on - strand, within MMJJ_RS04055at 753.584 kb on - strand, within MMJJ_RS04055at 753.712 kb on - strandat 753.713 kb on + strandat 753.746 kb on + strandat 753.796 kb on - strandat 753.814 kb on - strandat 753.817 kb on - strandat 753.817 kb on - strandat 753.818 kb on + strandat 753.826 kb on - strandat 753.826 kb on - strandat 753.826 kb on - strandat 753.826 kb on - strandat 753.827 kb on + strandat 753.827 kb on + strandat 753.873 kb on - strandat 753.873 kb on - strandat 753.874 kb on + strandat 753.874 kb on + strandat 753.874 kb on + strandat 753.875 kb on - strandat 753.875 kb on - strandat 753.876 kb on + strandat 753.877 kb on - strandat 753.877 kb on - strandat 753.889 kb on + strandat 753.911 kb on - strand, within MMJJ_RS04060at 753.912 kb on + strand, within MMJJ_RS04060at 753.937 kb on - strand, within MMJJ_RS04060at 753.938 kb on + strand, within MMJJ_RS04060at 753.938 kb on + strand, within MMJJ_RS04060at 753.945 kb on + strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.965 kb on + strand, within MMJJ_RS04060at 753.965 kb on + strand, within MMJJ_RS04060at 753.965 kb on + strand, within MMJJ_RS04060at 753.973 kb on - strand, within MMJJ_RS04060at 753.974 kb on + strand, within MMJJ_RS04060at 753.974 kb on + strand, within MMJJ_RS04060at 753.974 kb on + strand, within MMJJ_RS04060at 753.981 kb on - strand, within MMJJ_RS04060at 753.982 kb on + strand, within MMJJ_RS04060at 754.015 kb on - strand, within MMJJ_RS04060

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 5g/L bicarb, 40 psi H2CO2
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751,200 - MMJJ_RS04030 0.72 -1.2
751,230 + MMJJ_RS04030 0.78 -2.2
751,310 + -2.1
751,573 + MMJJ_RS04035 0.89 -2.3
751,574 - -4.8
751,575 + -3.5
751,575 + -3.9
751,575 + -3.8
751,576 - -3.3
751,577 + -4.6
751,577 + -2.6
751,578 - -2.3
751,578 - -3.7
751,579 + -1.9
751,598 + -3.7
751,600 - -2.2
751,601 + -3.0
751,633 - -4.6
751,633 - -3.9
751,727 - MMJJ_RS04040 0.20 -3.3
751,728 + MMJJ_RS04040 0.21 -3.4
751,819 + MMJJ_RS04040 0.47 -3.8
751,819 + MMJJ_RS04040 0.47 -4.0
751,887 + MMJJ_RS04040 0.67 -3.1
751,908 + MMJJ_RS04040 0.73 -4.0
751,908 + MMJJ_RS04040 0.73 -4.2
751,911 - MMJJ_RS04040 0.74 -2.3
751,911 - MMJJ_RS04040 0.74 -2.8
751,912 + MMJJ_RS04040 0.75 -3.7
751,912 + MMJJ_RS04040 0.75 -3.2
751,912 + MMJJ_RS04040 0.75 -3.2
751,949 + MMJJ_RS04040 0.85 -4.7
751,958 - MMJJ_RS04040 0.88 -3.9
751,980 + -3.1
752,013 + -3.9
752,014 - -3.9
752,087 + +0.6
752,088 - -3.4
752,089 + -4.0
752,094 - -3.3
752,301 - MMJJ_RS04045 0.26 -4.4
752,320 + MMJJ_RS04045 0.28 -3.4
752,350 + MMJJ_RS04045 0.31 -2.8
752,373 - MMJJ_RS04045 0.33 -1.8
752,373 - MMJJ_RS04045 0.33 -4.4
752,398 - MMJJ_RS04045 0.36 -3.1
752,401 + MMJJ_RS04045 0.36 -2.7
752,418 + MMJJ_RS04045 0.38 -3.1
752,420 + MMJJ_RS04045 0.38 -4.5
752,420 + MMJJ_RS04045 0.38 -2.9
752,420 + MMJJ_RS04045 0.38 -1.5
752,458 + MMJJ_RS04045 0.41 -4.0
752,524 - MMJJ_RS04045 0.48 -2.3
752,532 + MMJJ_RS04045 0.49 -1.7
752,573 + MMJJ_RS04045 0.53 -1.4
752,601 - MMJJ_RS04045 0.56 -3.4
752,602 + MMJJ_RS04045 0.56 -2.1
752,617 + MMJJ_RS04045 0.57 -2.3
752,628 - MMJJ_RS04045 0.58 -4.2
752,668 + MMJJ_RS04045 0.62 -4.0
752,692 + MMJJ_RS04045 0.65 -3.2
752,708 - MMJJ_RS04045 0.66 -1.5
752,708 - MMJJ_RS04045 0.66 +0.7
752,709 + MMJJ_RS04045 0.66 -2.9
752,709 + MMJJ_RS04045 0.66 -2.0
752,713 - MMJJ_RS04045 0.67 -0.7
752,721 - MMJJ_RS04045 0.67 -2.7
752,767 + MMJJ_RS04045 0.72 -1.6
752,824 - MMJJ_RS04045 0.77 -4.2
752,829 - MMJJ_RS04045 0.78 -2.2
752,829 - MMJJ_RS04045 0.78 -3.0
752,944 + MMJJ_RS04045 0.89 -4.1
752,971 - -3.8
753,031 + -2.5
753,101 + MMJJ_RS04050 0.15 -2.4
753,292 + MMJJ_RS04050 0.66 -1.9
753,367 - MMJJ_RS04050 0.86 -0.4
753,403 + -1.4
753,530 - MMJJ_RS04055 0.36 -0.6
753,541 - MMJJ_RS04055 0.40 -3.0
753,542 + MMJJ_RS04055 0.41 +2.0
753,544 - MMJJ_RS04055 0.41 +0.2
753,544 - MMJJ_RS04055 0.41 -1.1
753,544 - MMJJ_RS04055 0.41 -3.1
753,584 - MMJJ_RS04055 0.56 -0.5
753,712 - -3.0
753,713 + +0.9
753,746 + +0.5
753,796 - +0.8
753,814 - -1.1
753,817 - +1.3
753,817 - +0.6
753,818 + -1.0
753,826 - -1.2
753,826 - +1.0
753,826 - -2.8
753,826 - +1.5
753,827 + +0.4
753,827 + -3.8
753,873 - +3.0
753,873 - +2.1
753,874 + -0.4
753,874 + -0.4
753,874 + -1.6
753,875 - +0.0
753,875 - +0.4
753,876 + -0.9
753,877 - +1.8
753,877 - -2.1
753,889 + -2.2
753,911 - MMJJ_RS04060 0.11 +1.4
753,912 + MMJJ_RS04060 0.11 +0.6
753,937 - MMJJ_RS04060 0.13 +1.0
753,938 + MMJJ_RS04060 0.13 +1.4
753,938 + MMJJ_RS04060 0.13 +0.6
753,945 + MMJJ_RS04060 0.13 -1.6
753,964 - MMJJ_RS04060 0.14 +2.0
753,964 - MMJJ_RS04060 0.14 -1.0
753,964 - MMJJ_RS04060 0.14 +1.6
753,964 - MMJJ_RS04060 0.14 +1.7
753,964 - MMJJ_RS04060 0.14 +1.4
753,964 - MMJJ_RS04060 0.14 +0.9
753,965 + MMJJ_RS04060 0.14 -0.9
753,965 + MMJJ_RS04060 0.14 -0.2
753,965 + MMJJ_RS04060 0.14 +0.1
753,973 - MMJJ_RS04060 0.15 -0.0
753,974 + MMJJ_RS04060 0.15 +0.4
753,974 + MMJJ_RS04060 0.15 +0.6
753,974 + MMJJ_RS04060 0.15 -3.1
753,981 - MMJJ_RS04060 0.15 -2.8
753,982 + MMJJ_RS04060 0.15 +0.8
754,015 - MMJJ_RS04060 0.17 -1.0

Or see this region's nucleotide sequence