Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02145

Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02135 and MMJJ_RS02140 overlap by 4 nucleotidesMMJJ_RS02140 and MMJJ_RS02145 are separated by 43 nucleotidesMMJJ_RS02145 and MMJJ_RS02150 are separated by 123 nucleotides MMJJ_RS02135: MMJJ_RS02135 - TatD family hydrolase, at 406,175 to 407,017 _RS02135 MMJJ_RS02140: MMJJ_RS02140 - preflagellin peptidase FlaK, at 407,014 to 407,706 _RS02140 MMJJ_RS02145: MMJJ_RS02145 - class I SAM-dependent methyltransferase, at 407,750 to 408,352 _RS02145 MMJJ_RS02150: MMJJ_RS02150 - ornithine carbamoyltransferase, at 408,476 to 409,390 _RS02150 Position (kb) 407 408 409Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 406.758 kb on - strand, within MMJJ_RS02135at 406.856 kb on - strand, within MMJJ_RS02135at 407.039 kb on + strandat 407.039 kb on + strandat 407.065 kb on - strandat 407.066 kb on + strandat 407.066 kb on + strandat 407.069 kb on - strandat 407.069 kb on - strandat 407.069 kb on - strandat 407.069 kb on - strandat 407.070 kb on + strandat 407.070 kb on + strandat 407.070 kb on + strandat 407.070 kb on + strandat 407.074 kb on - strandat 407.075 kb on + strandat 407.080 kb on - strandat 407.091 kb on - strand, within MMJJ_RS02140at 407.110 kb on + strand, within MMJJ_RS02140at 407.117 kb on + strand, within MMJJ_RS02140at 407.135 kb on - strand, within MMJJ_RS02140at 407.136 kb on + strand, within MMJJ_RS02140at 407.381 kb on - strand, within MMJJ_RS02140at 407.382 kb on + strand, within MMJJ_RS02140at 407.414 kb on - strand, within MMJJ_RS02140at 407.414 kb on - strand, within MMJJ_RS02140at 407.414 kb on - strand, within MMJJ_RS02140at 407.414 kb on - strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.415 kb on + strand, within MMJJ_RS02140at 407.492 kb on + strand, within MMJJ_RS02140at 407.502 kb on - strand, within MMJJ_RS02140at 407.504 kb on - strand, within MMJJ_RS02140at 407.627 kb on - strand, within MMJJ_RS02140at 407.628 kb on + strand, within MMJJ_RS02140at 407.628 kb on + strand, within MMJJ_RS02140at 407.668 kb on - strandat 407.684 kb on + strandat 407.697 kb on + strandat 407.697 kb on + strandat 407.725 kb on - strandat 407.730 kb on + strandat 407.730 kb on + strandat 407.730 kb on + strandat 407.741 kb on + strandat 407.799 kb on + strandat 407.804 kb on + strandat 407.837 kb on + strand, within MMJJ_RS02145at 407.838 kb on - strand, within MMJJ_RS02145at 407.843 kb on + strand, within MMJJ_RS02145at 407.903 kb on - strand, within MMJJ_RS02145at 407.940 kb on + strand, within MMJJ_RS02145at 407.958 kb on + strand, within MMJJ_RS02145at 407.974 kb on - strand, within MMJJ_RS02145at 407.979 kb on + strand, within MMJJ_RS02145at 407.979 kb on + strand, within MMJJ_RS02145at 408.000 kb on + strand, within MMJJ_RS02145at 408.012 kb on + strand, within MMJJ_RS02145at 408.012 kb on + strand, within MMJJ_RS02145at 408.057 kb on + strand, within MMJJ_RS02145at 408.057 kb on + strand, within MMJJ_RS02145at 408.099 kb on + strand, within MMJJ_RS02145at 408.122 kb on + strand, within MMJJ_RS02145at 408.142 kb on - strand, within MMJJ_RS02145at 408.142 kb on - strand, within MMJJ_RS02145at 408.143 kb on + strand, within MMJJ_RS02145at 408.146 kb on - strand, within MMJJ_RS02145at 408.147 kb on + strand, within MMJJ_RS02145at 408.147 kb on + strand, within MMJJ_RS02145at 408.147 kb on + strand, within MMJJ_RS02145at 408.173 kb on - strand, within MMJJ_RS02145at 408.173 kb on - strand, within MMJJ_RS02145at 408.209 kb on - strand, within MMJJ_RS02145at 408.215 kb on - strand, within MMJJ_RS02145at 408.215 kb on - strand, within MMJJ_RS02145at 408.216 kb on + strand, within MMJJ_RS02145at 408.219 kb on + strand, within MMJJ_RS02145at 408.219 kb on + strand, within MMJJ_RS02145at 408.259 kb on - strand, within MMJJ_RS02145at 408.304 kb on - strandat 408.304 kb on - strandat 408.307 kb on - strandat 408.381 kb on - strandat 408.382 kb on + strandat 408.385 kb on - strandat 408.390 kb on + strandat 408.390 kb on + strandat 408.395 kb on - strandat 408.395 kb on - strandat 408.395 kb on - strandat 408.396 kb on + strandat 408.404 kb on - strandat 408.405 kb on + strandat 408.407 kb on + strandat 408.407 kb on + strandat 408.413 kb on - strandat 408.413 kb on - strandat 408.413 kb on - strandat 408.413 kb on - strandat 408.413 kb on - strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strandat 408.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 5g/L bicarb, 40 psi H2CO2
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406,758 - MMJJ_RS02135 0.69 +2.5
406,856 - MMJJ_RS02135 0.81 +0.9
407,039 + +0.9
407,039 + +0.0
407,065 - -3.9
407,066 + -1.8
407,066 + +0.8
407,069 - -0.1
407,069 - -0.6
407,069 - +1.0
407,069 - +2.4
407,070 + -1.6
407,070 + -1.2
407,070 + -0.1
407,070 + +0.1
407,074 - +1.5
407,075 + -2.2
407,080 - -0.7
407,091 - MMJJ_RS02140 0.11 -0.3
407,110 + MMJJ_RS02140 0.14 -2.1
407,117 + MMJJ_RS02140 0.15 -1.6
407,135 - MMJJ_RS02140 0.17 -1.6
407,136 + MMJJ_RS02140 0.18 -3.4
407,381 - MMJJ_RS02140 0.53 -0.6
407,382 + MMJJ_RS02140 0.53 +0.2
407,414 - MMJJ_RS02140 0.58 -0.5
407,414 - MMJJ_RS02140 0.58 -0.2
407,414 - MMJJ_RS02140 0.58 -0.4
407,414 - MMJJ_RS02140 0.58 +0.9
407,415 + MMJJ_RS02140 0.58 +0.2
407,415 + MMJJ_RS02140 0.58 -0.9
407,415 + MMJJ_RS02140 0.58 -3.8
407,415 + MMJJ_RS02140 0.58 -1.7
407,415 + MMJJ_RS02140 0.58 -1.2
407,415 + MMJJ_RS02140 0.58 -0.9
407,492 + MMJJ_RS02140 0.69 -1.1
407,502 - MMJJ_RS02140 0.70 -1.4
407,504 - MMJJ_RS02140 0.71 -0.8
407,627 - MMJJ_RS02140 0.88 -0.0
407,628 + MMJJ_RS02140 0.89 +0.5
407,628 + MMJJ_RS02140 0.89 -0.3
407,668 - -1.0
407,684 + +0.8
407,697 + -2.0
407,697 + -3.8
407,725 - -0.3
407,730 + +0.3
407,730 + +1.5
407,730 + +1.5
407,741 + -2.0
407,799 + -3.8
407,804 + -2.9
407,837 + MMJJ_RS02145 0.14 -1.1
407,838 - MMJJ_RS02145 0.15 -1.6
407,843 + MMJJ_RS02145 0.15 -3.3
407,903 - MMJJ_RS02145 0.25 -1.5
407,940 + MMJJ_RS02145 0.32 -3.8
407,958 + MMJJ_RS02145 0.34 -3.5
407,974 - MMJJ_RS02145 0.37 -4.7
407,979 + MMJJ_RS02145 0.38 -5.8
407,979 + MMJJ_RS02145 0.38 -3.5
408,000 + MMJJ_RS02145 0.41 -2.0
408,012 + MMJJ_RS02145 0.43 -5.0
408,012 + MMJJ_RS02145 0.43 -3.1
408,057 + MMJJ_RS02145 0.51 -3.0
408,057 + MMJJ_RS02145 0.51 -3.6
408,099 + MMJJ_RS02145 0.58 -4.1
408,122 + MMJJ_RS02145 0.62 -3.2
408,142 - MMJJ_RS02145 0.65 -3.3
408,142 - MMJJ_RS02145 0.65 -3.4
408,143 + MMJJ_RS02145 0.65 -0.1
408,146 - MMJJ_RS02145 0.66 -2.0
408,147 + MMJJ_RS02145 0.66 -5.1
408,147 + MMJJ_RS02145 0.66 -4.7
408,147 + MMJJ_RS02145 0.66 -2.5
408,173 - MMJJ_RS02145 0.70 -1.1
408,173 - MMJJ_RS02145 0.70 -3.7
408,209 - MMJJ_RS02145 0.76 -1.1
408,215 - MMJJ_RS02145 0.77 -5.0
408,215 - MMJJ_RS02145 0.77 +1.4
408,216 + MMJJ_RS02145 0.77 -3.7
408,219 + MMJJ_RS02145 0.78 -1.1
408,219 + MMJJ_RS02145 0.78 -3.4
408,259 - MMJJ_RS02145 0.84 -3.3
408,304 - -3.3
408,304 - -1.9
408,307 - -3.7
408,381 - -1.7
408,382 + -2.4
408,385 - -4.6
408,390 + -4.6
408,390 + -3.3
408,395 - -3.0
408,395 - +0.0
408,395 - +1.7
408,396 + -2.1
408,404 - -3.3
408,405 + -2.8
408,407 + -3.6
408,407 + -3.0
408,413 - -3.1
408,413 - -1.4
408,413 - -3.8
408,413 - -3.2
408,413 - -0.1
408,414 + -0.4
408,414 + -2.5
408,414 + -3.1
408,414 + -0.5
408,414 + -3.4
408,414 + -2.4
408,414 + -3.7
408,414 + +0.8

Or see this region's nucleotide sequence