Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01680

Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01675 and MMJJ_RS01680 are separated by 16 nucleotidesMMJJ_RS01680 and MMJJ_RS01685 are separated by 4 nucleotides MMJJ_RS01675: MMJJ_RS01675 - malate dehydrogenase, at 324,664 to 325,608 _RS01675 MMJJ_RS01680: MMJJ_RS01680 - cation diffusion facilitator family transporter, at 325,625 to 326,500 _RS01680 MMJJ_RS01685: MMJJ_RS01685 - DUF354 domain-containing protein, at 326,505 to 327,518 _RS01685 Position (kb) 325 326 327Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 324.633 kb on + strandat 324.633 kb on + strandat 324.633 kb on + strandat 324.645 kb on - strandat 324.646 kb on + strandat 324.736 kb on - strandat 324.780 kb on - strand, within MMJJ_RS01675at 324.808 kb on - strand, within MMJJ_RS01675at 324.837 kb on - strand, within MMJJ_RS01675at 324.840 kb on - strand, within MMJJ_RS01675at 324.841 kb on + strand, within MMJJ_RS01675at 324.841 kb on + strand, within MMJJ_RS01675at 324.851 kb on - strand, within MMJJ_RS01675at 324.851 kb on - strand, within MMJJ_RS01675at 324.851 kb on - strand, within MMJJ_RS01675at 324.852 kb on + strand, within MMJJ_RS01675at 324.852 kb on + strand, within MMJJ_RS01675at 324.869 kb on - strand, within MMJJ_RS01675at 324.869 kb on - strand, within MMJJ_RS01675at 324.869 kb on - strand, within MMJJ_RS01675at 324.869 kb on - strand, within MMJJ_RS01675at 324.869 kb on - strand, within MMJJ_RS01675at 324.869 kb on - strand, within MMJJ_RS01675at 324.869 kb on - strand, within MMJJ_RS01675at 324.870 kb on + strand, within MMJJ_RS01675at 324.876 kb on - strand, within MMJJ_RS01675at 324.876 kb on - strand, within MMJJ_RS01675at 324.876 kb on - strand, within MMJJ_RS01675at 324.876 kb on - strand, within MMJJ_RS01675at 324.877 kb on + strand, within MMJJ_RS01675at 324.877 kb on + strand, within MMJJ_RS01675at 324.877 kb on + strand, within MMJJ_RS01675at 324.882 kb on - strand, within MMJJ_RS01675at 324.891 kb on - strand, within MMJJ_RS01675at 324.891 kb on - strand, within MMJJ_RS01675at 324.892 kb on + strand, within MMJJ_RS01675at 324.892 kb on + strand, within MMJJ_RS01675at 324.899 kb on - strand, within MMJJ_RS01675at 324.899 kb on - strand, within MMJJ_RS01675at 324.904 kb on + strand, within MMJJ_RS01675at 324.904 kb on + strand, within MMJJ_RS01675at 324.948 kb on - strand, within MMJJ_RS01675at 324.990 kb on - strand, within MMJJ_RS01675at 324.990 kb on - strand, within MMJJ_RS01675at 324.991 kb on + strandat 324.991 kb on + strand, within MMJJ_RS01675at 324.996 kb on - strandat 324.996 kb on - strand, within MMJJ_RS01675at 324.997 kb on + strand, within MMJJ_RS01675at 324.997 kb on + strand, within MMJJ_RS01675at 325.011 kb on - strand, within MMJJ_RS01675at 325.011 kb on - strand, within MMJJ_RS01675at 325.011 kb on - strand, within MMJJ_RS01675at 325.012 kb on + strand, within MMJJ_RS01675at 325.017 kb on + strand, within MMJJ_RS01675at 325.051 kb on - strand, within MMJJ_RS01675at 325.051 kb on - strand, within MMJJ_RS01675at 325.051 kb on - strand, within MMJJ_RS01675at 325.051 kb on - strandat 325.051 kb on - strand, within MMJJ_RS01675at 325.051 kb on - strand, within MMJJ_RS01675at 325.051 kb on - strand, within MMJJ_RS01675at 325.051 kb on - strand, within MMJJ_RS01675at 325.052 kb on + strand, within MMJJ_RS01675at 325.052 kb on + strand, within MMJJ_RS01675at 325.052 kb on + strand, within MMJJ_RS01675at 325.075 kb on - strand, within MMJJ_RS01675at 325.128 kb on - strand, within MMJJ_RS01675at 325.134 kb on + strand, within MMJJ_RS01675at 325.134 kb on + strand, within MMJJ_RS01675at 325.174 kb on + strand, within MMJJ_RS01675at 325.174 kb on + strand, within MMJJ_RS01675at 325.235 kb on - strand, within MMJJ_RS01675at 325.236 kb on + strand, within MMJJ_RS01675at 325.236 kb on + strand, within MMJJ_RS01675at 325.267 kb on - strand, within MMJJ_RS01675at 325.305 kb on - strand, within MMJJ_RS01675at 325.306 kb on + strand, within MMJJ_RS01675at 325.312 kb on - strand, within MMJJ_RS01675at 325.329 kb on + strand, within MMJJ_RS01675at 325.329 kb on + strand, within MMJJ_RS01675at 325.373 kb on - strand, within MMJJ_RS01675at 325.382 kb on - strand, within MMJJ_RS01675at 325.382 kb on - strand, within MMJJ_RS01675at 325.383 kb on + strand, within MMJJ_RS01675at 325.383 kb on + strand, within MMJJ_RS01675at 325.383 kb on + strand, within MMJJ_RS01675at 325.383 kb on + strandat 325.383 kb on + strand, within MMJJ_RS01675at 325.383 kb on + strand, within MMJJ_RS01675at 325.389 kb on - strand, within MMJJ_RS01675at 325.389 kb on - strand, within MMJJ_RS01675at 325.390 kb on + strand, within MMJJ_RS01675at 325.472 kb on - strand, within MMJJ_RS01675at 325.484 kb on - strand, within MMJJ_RS01675at 325.515 kb on + strandat 325.571 kb on - strandat 325.571 kb on - strandat 325.572 kb on + strandat 325.602 kb on - strandat 325.603 kb on + strandat 325.650 kb on - strandat 325.650 kb on - strandat 325.650 kb on - strandat 325.657 kb on - strandat 325.715 kb on + strand, within MMJJ_RS01680at 325.722 kb on - strand, within MMJJ_RS01680at 325.722 kb on - strand, within MMJJ_RS01680at 325.736 kb on + strand, within MMJJ_RS01680at 325.743 kb on - strand, within MMJJ_RS01680at 325.743 kb on - strand, within MMJJ_RS01680at 325.783 kb on - strand, within MMJJ_RS01680at 325.980 kb on - strand, within MMJJ_RS01680at 326.022 kb on + strand, within MMJJ_RS01680at 326.028 kb on + strand, within MMJJ_RS01680at 326.028 kb on + strand, within MMJJ_RS01680at 326.121 kb on - strand, within MMJJ_RS01680at 326.179 kb on + strand, within MMJJ_RS01680at 326.190 kb on - strand, within MMJJ_RS01680at 326.191 kb on + strand, within MMJJ_RS01680at 326.195 kb on + strand, within MMJJ_RS01680at 326.220 kb on + strand, within MMJJ_RS01680at 326.270 kb on + strand, within MMJJ_RS01680at 326.290 kb on + strand, within MMJJ_RS01680at 326.319 kb on - strand, within MMJJ_RS01680at 326.319 kb on - strand, within MMJJ_RS01680at 326.320 kb on + strand, within MMJJ_RS01680at 326.326 kb on + strand, within MMJJ_RS01680at 326.357 kb on - strand, within MMJJ_RS01680at 326.357 kb on - strand, within MMJJ_RS01680at 326.410 kb on - strand, within MMJJ_RS01680at 326.501 kb on - strandat 326.502 kb on + strandat 326.512 kb on + strandat 326.585 kb on - strandat 326.778 kb on - strand, within MMJJ_RS01685at 327.161 kb on - strand, within MMJJ_RS01685at 327.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 5g/L bicarb, 40 psi H2CO2
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324,633 + +0.1
324,633 + -0.5
324,633 + -1.5
324,645 - -1.8
324,646 + +1.8
324,736 - -2.4
324,780 - MMJJ_RS01675 0.12 +0.1
324,808 - MMJJ_RS01675 0.15 -3.9
324,837 - MMJJ_RS01675 0.18 -1.6
324,840 - MMJJ_RS01675 0.19 -2.6
324,841 + MMJJ_RS01675 0.19 -0.8
324,841 + MMJJ_RS01675 0.19 -1.7
324,851 - MMJJ_RS01675 0.20 +0.1
324,851 - MMJJ_RS01675 0.20 -1.5
324,851 - MMJJ_RS01675 0.20 +0.6
324,852 + MMJJ_RS01675 0.20 -1.3
324,852 + MMJJ_RS01675 0.20 -0.3
324,869 - MMJJ_RS01675 0.22 -0.3
324,869 - MMJJ_RS01675 0.22 -2.2
324,869 - MMJJ_RS01675 0.22 -1.5
324,869 - MMJJ_RS01675 0.22 -2.1
324,869 - MMJJ_RS01675 0.22 -1.2
324,869 - MMJJ_RS01675 0.22 -1.9
324,869 - MMJJ_RS01675 0.22 -0.5
324,870 + MMJJ_RS01675 0.22 -2.1
324,876 - MMJJ_RS01675 0.22 +0.1
324,876 - MMJJ_RS01675 0.22 -1.5
324,876 - MMJJ_RS01675 0.22 -2.9
324,876 - MMJJ_RS01675 0.22 -4.4
324,877 + MMJJ_RS01675 0.23 -3.2
324,877 + MMJJ_RS01675 0.23 -2.9
324,877 + MMJJ_RS01675 0.23 -0.8
324,882 - MMJJ_RS01675 0.23 -1.0
324,891 - MMJJ_RS01675 0.24 +0.6
324,891 - MMJJ_RS01675 0.24 -2.6
324,892 + MMJJ_RS01675 0.24 -0.2
324,892 + MMJJ_RS01675 0.24 -1.6
324,899 - MMJJ_RS01675 0.25 -2.0
324,899 - MMJJ_RS01675 0.25 -0.1
324,904 + MMJJ_RS01675 0.25 -1.9
324,904 + MMJJ_RS01675 0.25 -3.8
324,948 - MMJJ_RS01675 0.30 +1.2
324,990 - MMJJ_RS01675 0.34 -2.0
324,990 - MMJJ_RS01675 0.34 -2.5
324,991 + -1.2
324,991 + MMJJ_RS01675 0.35 +2.6
324,996 - +0.3
324,996 - MMJJ_RS01675 0.35 -3.1
324,997 + MMJJ_RS01675 0.35 -0.3
324,997 + MMJJ_RS01675 0.35 -4.2
325,011 - MMJJ_RS01675 0.37 -3.4
325,011 - MMJJ_RS01675 0.37 -2.2
325,011 - MMJJ_RS01675 0.37 +1.8
325,012 + MMJJ_RS01675 0.37 -1.2
325,017 + MMJJ_RS01675 0.37 -3.7
325,051 - MMJJ_RS01675 0.41 +0.2
325,051 - MMJJ_RS01675 0.41 -0.2
325,051 - MMJJ_RS01675 0.41 -1.2
325,051 - -0.2
325,051 - MMJJ_RS01675 0.41 +0.4
325,051 - MMJJ_RS01675 0.41 -2.7
325,051 - MMJJ_RS01675 0.41 -2.6
325,051 - MMJJ_RS01675 0.41 -1.0
325,052 + MMJJ_RS01675 0.41 -1.0
325,052 + MMJJ_RS01675 0.41 -0.1
325,052 + MMJJ_RS01675 0.41 -1.4
325,075 - MMJJ_RS01675 0.43 -3.6
325,128 - MMJJ_RS01675 0.49 -2.7
325,134 + MMJJ_RS01675 0.50 -2.4
325,134 + MMJJ_RS01675 0.50 +0.6
325,174 + MMJJ_RS01675 0.54 -0.2
325,174 + MMJJ_RS01675 0.54 -0.7
325,235 - MMJJ_RS01675 0.60 -4.0
325,236 + MMJJ_RS01675 0.61 +0.5
325,236 + MMJJ_RS01675 0.61 -0.7
325,267 - MMJJ_RS01675 0.64 -5.4
325,305 - MMJJ_RS01675 0.68 +0.4
325,306 + MMJJ_RS01675 0.68 -2.5
325,312 - MMJJ_RS01675 0.69 +0.9
325,329 + MMJJ_RS01675 0.70 -1.1
325,329 + MMJJ_RS01675 0.70 -4.5
325,373 - MMJJ_RS01675 0.75 -0.2
325,382 - MMJJ_RS01675 0.76 +0.3
325,382 - MMJJ_RS01675 0.76 +1.5
325,383 + MMJJ_RS01675 0.76 -1.7
325,383 + MMJJ_RS01675 0.76 -1.1
325,383 + MMJJ_RS01675 0.76 +1.6
325,383 + -1.0
325,383 + MMJJ_RS01675 0.76 -2.0
325,383 + MMJJ_RS01675 0.76 -0.2
325,389 - MMJJ_RS01675 0.77 -3.2
325,389 - MMJJ_RS01675 0.77 -0.7
325,390 + MMJJ_RS01675 0.77 -0.7
325,472 - MMJJ_RS01675 0.86 -2.0
325,484 - MMJJ_RS01675 0.87 +0.8
325,515 + -1.0
325,571 - -1.2
325,571 - -1.9
325,572 + +0.3
325,602 - -1.3
325,603 + -2.6
325,650 - +1.3
325,650 - -1.1
325,650 - +1.1
325,657 - -3.4
325,715 + MMJJ_RS01680 0.10 -3.9
325,722 - MMJJ_RS01680 0.11 -3.6
325,722 - MMJJ_RS01680 0.11 -1.2
325,736 + MMJJ_RS01680 0.13 -3.0
325,743 - MMJJ_RS01680 0.13 -3.8
325,743 - MMJJ_RS01680 0.13 -3.7
325,783 - MMJJ_RS01680 0.18 -1.5
325,980 - MMJJ_RS01680 0.41 -2.8
326,022 + MMJJ_RS01680 0.45 -0.8
326,028 + MMJJ_RS01680 0.46 -1.9
326,028 + MMJJ_RS01680 0.46 -2.0
326,121 - MMJJ_RS01680 0.57 -2.4
326,179 + MMJJ_RS01680 0.63 -2.8
326,190 - MMJJ_RS01680 0.64 -1.5
326,191 + MMJJ_RS01680 0.65 -3.6
326,195 + MMJJ_RS01680 0.65 -0.2
326,220 + MMJJ_RS01680 0.68 -4.1
326,270 + MMJJ_RS01680 0.74 -0.7
326,290 + MMJJ_RS01680 0.76 -4.0
326,319 - MMJJ_RS01680 0.79 -3.8
326,319 - MMJJ_RS01680 0.79 -2.1
326,320 + MMJJ_RS01680 0.79 -3.5
326,326 + MMJJ_RS01680 0.80 -1.5
326,357 - MMJJ_RS01680 0.84 +0.1
326,357 - MMJJ_RS01680 0.84 -1.0
326,410 - MMJJ_RS01680 0.90 -3.6
326,501 - +1.8
326,502 + +1.5
326,512 + -0.8
326,585 - +0.3
326,778 - MMJJ_RS01685 0.27 -1.0
327,161 - MMJJ_RS01685 0.65 -1.2
327,379 - -0.7

Or see this region's nucleotide sequence