Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17620

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
3,852,404	+		LRK54_RS17615	0.77	-0.0
3,852,404	+		LRK54_RS17615	0.77	+0.4
3,852,404	+		LRK54_RS17615	0.77	+0.2
3,852,404	+		LRK54_RS17615	0.77	+0.2
3,852,404	+		LRK54_RS17615	0.77	+0.3
3,852,404	+		LRK54_RS17615	0.77	-0.4
3,852,404	+		LRK54_RS17615	0.77	-1.4
3,852,617	+		LRK54_RS17615	0.89	+0.5
3,852,617	+		LRK54_RS17615	0.89	-0.3
3,852,617	+		LRK54_RS17615	0.89	+0.9
3,852,617	+		LRK54_RS17615	0.89	+0.6
3,852,617	+		LRK54_RS17615	0.89	-1.3
3,852,617	+		LRK54_RS17615	0.89	+0.1
3,852,617	+		LRK54_RS17615	0.89	+0.7
3,852,617	+		LRK54_RS17615	0.89	+1.0
3,852,617	+		LRK54_RS17615	0.89	-2.7
3,852,618	-		LRK54_RS17615	0.89	+0.4
3,852,618	-		LRK54_RS17615	0.89	+0.1
3,852,618	-		LRK54_RS17615	0.89	+1.0
3,852,618	-		LRK54_RS17615	0.89	-0.1
3,852,618	-		LRK54_RS17615	0.89	-0.6
3,852,618	-		LRK54_RS17615	0.89	+0.0
3,852,618	-		LRK54_RS17615	0.89	-0.4
3,852,973	-				-2.4
3,852,973	-				+0.6
3,852,991	+				-1.1
3,852,991	+				-0.5
3,852,991	+				+0.8
3,852,992	-				-0.0
3,852,992	-				-0.5
3,852,992	-				+0.8
3,852,992	-				+2.2
3,853,190	+				+0.0
3,853,190	+				-1.2
3,853,190	+				-0.7
3,853,190	+				+0.6
3,853,190	+				-0.6
3,853,190	+				-0.9
3,853,190	+				+0.2
3,853,190	+				+1.1
3,853,190	+				+1.2
3,853,190	+				-0.6
3,853,190	+				-0.2
3,853,190	+				-0.2
3,853,191	-				+0.1
3,853,191	-				-0.1
3,853,191	-				-0.9
3,853,191	-				-0.5
3,853,191	-				-0.6
3,853,191	-				-0.2
3,853,191	-				-0.0
3,853,191	-				-1.1
3,853,191	-				+3.4
3,853,191	-				+0.7
3,853,191	-				-0.2
3,853,191	-				+0.7
3,853,191	-				+0.4
3,853,191	-				+0.6
3,853,191	-				-0.6
3,853,191	-				-0.7
3,853,191	-				+0.2
3,853,191	-				+0.4
3,853,191	-				-0.7
3,853,191	-				+0.2
3,853,331	+				-0.4
3,853,331	+				-0.4
3,853,331	+				-0.5
3,853,332	-				-1.0
3,853,332	-				+1.4
3,853,332	-				-1.4
3,853,332	-				-0.5
3,853,332	-				+0.3
3,853,332	-				-0.4
3,853,342	+				+0.3
3,853,342	+				-2.6
3,853,342	+				+0.2
3,853,343	-				+0.2
3,853,411	+				-0.9
3,853,411	+				-0.4
3,853,411	+				-0.0
3,853,411	+				+0.6
3,853,411	+				+0.7
3,853,411	+				-1.3
3,853,411	+				-1.0
3,853,412	-				+0.2
3,853,412	-				+0.6
3,853,412	-				-0.7
3,853,412	-				-1.5
3,853,412	-				-2.0
3,853,412	-				+1.4
3,853,412	-				-0.8
3,853,412	-				-1.2
3,853,576	+		LRK54_RS17620	0.56	+0.4
3,853,576	+		LRK54_RS17620	0.56	-0.6
3,853,576	+		LRK54_RS17620	0.56	-0.9
3,853,576	+		LRK54_RS17620	0.56	+0.2
3,853,576	+		LRK54_RS17620	0.56	-0.6
3,853,577	-		LRK54_RS17620	0.56	-1.1
3,853,577	-		LRK54_RS17620	0.56	-0.4
3,853,577	-		LRK54_RS17620	0.56	-0.2
3,853,577	-		LRK54_RS17620	0.56	-1.7
3,853,577	-		LRK54_RS17620	0.56	-2.6
3,853,698	-				-0.6
3,853,698	-				-0.4
3,853,720	+				-0.4
3,853,720	+				+1.8
3,853,720	+				-0.8
3,853,720	+				+0.4
3,853,721	-				+0.3
3,853,721	-				-0.5
3,853,721	-				+1.1
3,853,721	-				-1.0
3,853,721	-				-0.6
3,853,721	-				+1.1
3,853,721	-				+1.8
3,853,721	-				+0.1
3,853,722	+				-0.3
3,853,722	+				-0.4
3,853,722	+				-1.0
3,853,722	+				-0.7
3,853,722	+				+0.8
3,853,722	+				-0.1
3,853,722	+				+0.4
3,853,722	+				-0.7
3,853,722	+				-0.3
3,853,722	+				-1.4
3,853,723	-				-0.4
3,853,723	-				-0.1
3,853,723	-				+0.5
3,853,723	-				-0.5
3,853,782	-				-0.0
3,853,783	-				+0.7
3,853,833	+				+0.5
3,853,833	+				+0.4
3,853,833	+				-0.7
3,853,833	+				-0.8
3,853,833	+				+0.1
3,853,833	+				+0.7
3,853,834	-				+1.1
3,853,834	-				-0.3
3,853,834	-				-1.2
3,853,845	+				+0.0
3,853,845	+				-0.4
3,853,845	+				-1.3
3,853,845	+				+1.4
3,853,845	+				-0.7
3,853,845	+				+0.7
3,853,846	-				+0.1
3,853,846	-				+1.1
3,853,875	-		LRK54_RS17625	0.14	+0.6
3,853,875	-		LRK54_RS17625	0.14	-1.2
3,853,940	-		LRK54_RS17625	0.35	-1.2
3,854,036	+		LRK54_RS17625	0.66	+0.7
3,854,036	+		LRK54_RS17625	0.66	+0.2
3,854,037	-		LRK54_RS17625	0.66	-0.8
3,854,037	-		LRK54_RS17625	0.66	-0.1
3,854,037	-		LRK54_RS17625	0.66	+0.6
3,854,037	-		LRK54_RS17625	0.66	-0.4
3,854,040	+		LRK54_RS17625	0.67	-0.5
3,854,040	+		LRK54_RS17625	0.67	+0.0
3,854,040	+		LRK54_RS17625	0.67	+1.0
3,854,040	+		LRK54_RS17625	0.67	-0.4
3,854,040	+		LRK54_RS17625	0.67	-0.9
3,854,040	+		LRK54_RS17625	0.67	-1.1
3,854,040	+		LRK54_RS17625	0.67	+0.6
3,854,040	+		LRK54_RS17625	0.67	-0.6
3,854,040	+		LRK54_RS17625	0.67	-2.3
3,854,040	+		LRK54_RS17625	0.67	-0.5
3,854,040	+		LRK54_RS17625	0.67	-0.4
3,854,040	+		LRK54_RS17625	0.67	+0.1
3,854,040	+		LRK54_RS17625	0.67	+1.0
3,854,040	+		LRK54_RS17625	0.67	-1.4
3,854,040	+		LRK54_RS17625	0.67	-0.2
3,854,040	+		LRK54_RS17625	0.67	+0.1
3,854,040	+		LRK54_RS17625	0.67	+1.1
3,854,040	+		LRK54_RS17625	0.67	+0.1
3,854,040	+		LRK54_RS17625	0.67	-0.3
3,854,040	+		LRK54_RS17625	0.67	-0.2
3,854,040	+		LRK54_RS17625	0.67	-1.1
3,854,040	+		LRK54_RS17625	0.67	-1.7
3,854,040	+		LRK54_RS17625	0.67	+0.2
3,854,040	+		LRK54_RS17625	0.67	+0.5
3,854,040	+		LRK54_RS17625	0.67	-0.9
3,854,040	+		LRK54_RS17625	0.67	+0.1
3,854,040	+		LRK54_RS17625	0.67	+0.4
3,854,040	+		LRK54_RS17625	0.67	-1.0
3,854,040	+		LRK54_RS17625	0.67	-0.0
3,854,040	+		LRK54_RS17625	0.67	+0.3
3,854,040	+		LRK54_RS17625	0.67	+0.5
3,854,040	+		LRK54_RS17625	0.67	-1.6
3,854,040	+		LRK54_RS17625	0.67	-2.0
3,854,040	+		LRK54_RS17625	0.67	-0.1
3,854,040	+		LRK54_RS17625	0.67	-0.2
3,854,040	+		LRK54_RS17625	0.67	+0.3
3,854,040	+		LRK54_RS17625	0.67	+0.7
3,854,041	-		LRK54_RS17625	0.68	-0.7
3,854,041	-		LRK54_RS17625	0.68	-0.4
3,854,041	-		LRK54_RS17625	0.68	+0.8
3,854,041	-		LRK54_RS17625	0.68	+0.4
3,854,041	-		LRK54_RS17625	0.68	-0.5
3,854,041	-		LRK54_RS17625	0.68	-0.7
3,854,041	-		LRK54_RS17625	0.68	+0.6
3,854,041	-		LRK54_RS17625	0.68	+1.4
3,854,041	-		LRK54_RS17625	0.68	+0.2
3,854,041	-		LRK54_RS17625	0.68	-0.5
3,854,041	-		LRK54_RS17625	0.68	-0.7
3,854,041	-		LRK54_RS17625	0.68	-0.8
3,854,041	-		LRK54_RS17625	0.68	-0.4
3,854,041	-		LRK54_RS17625	0.68	-0.7
3,854,041	-		LRK54_RS17625	0.68	-1.7
3,854,041	-		LRK54_RS17625	0.68	-0.2
3,854,041	-		LRK54_RS17625	0.68	-0.6
3,854,041	-		LRK54_RS17625	0.68	+0.3
3,854,041	-		LRK54_RS17625	0.68	-3.2
3,854,041	-		LRK54_RS17625	0.68	+1.1
3,854,041	-		LRK54_RS17625	0.68	-0.0
3,854,041	-		LRK54_RS17625	0.68	-0.2
3,854,041	-		LRK54_RS17625	0.68	-1.5
3,854,041	-		LRK54_RS17625	0.68	-0.2
3,854,041	-		LRK54_RS17625	0.68	+0.4
3,854,041	-		LRK54_RS17625	0.68	-1.7
3,854,041	-		LRK54_RS17625	0.68	+0.4
3,854,041	-		LRK54_RS17625	0.68	-1.3
3,854,041	-		LRK54_RS17625	0.68	-0.1
3,854,041	-		LRK54_RS17625	0.68	+0.4
3,854,041	-		LRK54_RS17625	0.68	+0.8
3,854,041	-		LRK54_RS17625	0.68	-0.6
3,854,041	-		LRK54_RS17625	0.68	-1.0
3,854,041	-		LRK54_RS17625	0.68	-0.3
3,854,041	-		LRK54_RS17625	0.68	+0.7
3,854,041	-		LRK54_RS17625	0.68	-0.4
3,854,041	-		LRK54_RS17625	0.68	-0.0
3,854,044	+		LRK54_RS17625	0.69	-0.6
3,854,044	+		LRK54_RS17625	0.69	-0.3
3,854,044	+		LRK54_RS17625	0.69	+0.8
3,854,044	+		LRK54_RS17625	0.69	-0.2
3,854,044	+		LRK54_RS17625	0.69	+0.4
3,854,044	+		LRK54_RS17625	0.69	+0.2
3,854,044	+		LRK54_RS17625	0.69	+0.6
3,854,044	+		LRK54_RS17625	0.69	+0.2
3,854,044	+		LRK54_RS17625	0.69	+0.6
3,854,044	+		LRK54_RS17625	0.69	-1.6
3,854,044	+		LRK54_RS17625	0.69	-0.4
3,854,044	+		LRK54_RS17625	0.69	-0.5
3,854,044	+		LRK54_RS17625	0.69	+0.2
3,854,044	+		LRK54_RS17625	0.69	-0.4
3,854,045	-		LRK54_RS17625	0.69	-0.3
3,854,045	-		LRK54_RS17625	0.69	-1.0
3,854,045	-		LRK54_RS17625	0.69	-0.7
3,854,045	-		LRK54_RS17625	0.69	-1.8
3,854,045	-		LRK54_RS17625	0.69	-0.6
3,854,045	-		LRK54_RS17625	0.69	+2.4
3,854,045	-		LRK54_RS17625	0.69	+0.8
3,854,045	-		LRK54_RS17625	0.69	+1.4
3,854,045	-		LRK54_RS17625	0.69	-0.1
3,854,045	-		LRK54_RS17625	0.69	-1.0
3,854,045	-		LRK54_RS17625	0.69	+1.3
3,854,045	-		LRK54_RS17625	0.69	-2.1
3,854,045	-		LRK54_RS17625	0.69	+0.0
3,854,045	-		LRK54_RS17625	0.69	+1.7
3,854,045	-		LRK54_RS17625	0.69	+0.1
3,854,045	-		LRK54_RS17625	0.69	+0.3
3,854,045	-		LRK54_RS17625	0.69	-0.7
3,854,045	-		LRK54_RS17625	0.69	+1.3
3,854,045	-		LRK54_RS17625	0.69	-1.2
3,854,187	+				-1.0
3,854,188	-				-1.9
3,854,188	-				+1.4
3,854,188	-				-0.6
3,854,222	+				-0.6
3,854,222	+				-0.2
3,854,222	+				+0.3
3,854,222	+				-0.2
3,854,222	+				-0.9
3,854,222	+				-0.6
3,854,222	+				+1.0
3,854,222	+				-0.2
3,854,222	+				-1.0
3,854,222	+				+1.3
3,854,222	+				+2.2
3,854,222	+				-0.9
3,854,222	+				-1.8
3,854,223	-				-0.2
3,854,223	-				-1.3
3,854,223	-				-1.4
3,854,223	-				+0.8
3,854,223	-				-0.5
3,854,223	-				-0.4
3,854,223	-				-0.2
3,854,223	-				-2.4
3,854,223	-				+0.6
3,854,314	-		LRK54_RS17630	0.17	+0.4
3,854,420	+		LRK54_RS17630	0.26	+2.4
3,854,420	+		LRK54_RS17630	0.26	+0.4
3,854,420	+		LRK54_RS17630	0.26	-0.4
3,854,420	+		LRK54_RS17630	0.26	-2.1
3,854,420	+		LRK54_RS17630	0.26	-2.5
3,854,420	+		LRK54_RS17630	0.26	-1.0
3,854,421	-		LRK54_RS17630	0.27	-0.7
3,854,421	-		LRK54_RS17630	0.27	+0.2
3,854,421	-		LRK54_RS17630	0.27	+0.3
3,854,595	+		LRK54_RS17630	0.43	+0.4
3,854,595	+		LRK54_RS17630	0.43	-1.0
3,854,595	+		LRK54_RS17630	0.43	+3.4
3,854,595	+		LRK54_RS17630	0.43	+0.4
3,854,596	-		LRK54_RS17630	0.43	-0.3
3,854,596	-		LRK54_RS17630	0.43	-0.0
3,854,596	-		LRK54_RS17630	0.43	-0.2
3,854,678	+		LRK54_RS17630	0.51	+0.2
3,854,678	+		LRK54_RS17630	0.51	+0.2
3,854,678	+		LRK54_RS17630	0.51	-1.2
3,854,679	-		LRK54_RS17630	0.51	+0.5
3,854,679	-		LRK54_RS17630	0.51	+0.5