Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16850

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
3,687,373	+		LRK54_RS16845	0.66	-0.6
3,687,373	+		LRK54_RS16845	0.66	+1.2
3,687,373	+		LRK54_RS16845	0.66	-1.6
3,687,373	+		LRK54_RS16845	0.66	-0.7
3,687,373	+		LRK54_RS16845	0.66	-1.0
3,687,373	+		LRK54_RS16845	0.66	-0.2
3,687,373	+		LRK54_RS16845	0.66	+0.1
3,687,373	+		LRK54_RS16845	0.66	-0.3
3,687,373	+		LRK54_RS16845	0.66	-1.2
3,687,373	+		LRK54_RS16845	0.66	-1.0
3,687,373	+		LRK54_RS16845	0.66	-2.1
3,687,374	-		LRK54_RS16845	0.66	+0.2
3,687,374	-		LRK54_RS16845	0.66	-1.2
3,687,374	-		LRK54_RS16845	0.66	-1.0
3,687,374	-		LRK54_RS16845	0.66	-0.1
3,687,374	-		LRK54_RS16845	0.66	-0.8
3,687,374	-		LRK54_RS16845	0.66	-0.6
3,687,374	-		LRK54_RS16845	0.66	-0.8
3,687,374	-		LRK54_RS16845	0.66	-0.0
3,687,374	-		LRK54_RS16845	0.66	-0.6
3,687,414	+		LRK54_RS16845	0.68	-1.5
3,687,415	-		LRK54_RS16845	0.68	-1.3
3,687,415	-		LRK54_RS16845	0.68	-1.4
3,687,415	-		LRK54_RS16845	0.68	-0.6
3,687,415	-		LRK54_RS16845	0.68	-1.4
3,687,454	+		LRK54_RS16845	0.69	-0.6
3,687,455	-		LRK54_RS16845	0.69	-0.9
3,687,455	-		LRK54_RS16845	0.69	-1.3
3,687,455	-		LRK54_RS16845	0.69	+0.8
3,687,455	-		LRK54_RS16845	0.69	-0.3
3,687,455	-		LRK54_RS16845	0.69	-1.7
3,687,455	-		LRK54_RS16845	0.69	+0.1
3,687,527	+		LRK54_RS16845	0.73	+1.0
3,687,556	+		LRK54_RS16845	0.74	+1.3
3,687,556	+		LRK54_RS16845	0.74	+1.3
3,687,556	+		LRK54_RS16845	0.74	+0.1
3,687,557	-		LRK54_RS16845	0.74	-0.8
3,687,557	-		LRK54_RS16845	0.74	+1.0
3,687,557	-		LRK54_RS16845	0.74	+0.1
3,687,557	-		LRK54_RS16845	0.74	-0.2
3,687,567	+		LRK54_RS16845	0.74	-0.5
3,687,567	+		LRK54_RS16845	0.74	-0.6
3,687,567	+		LRK54_RS16845	0.74	-2.7
3,687,567	+		LRK54_RS16845	0.74	-0.8
3,687,567	+		LRK54_RS16845	0.74	-0.7
3,687,567	+		LRK54_RS16845	0.74	+2.1
3,687,568	-		LRK54_RS16845	0.74	-1.5
3,687,568	-		LRK54_RS16845	0.74	-0.2
3,687,568	-		LRK54_RS16845	0.74	-0.6
3,687,568	-		LRK54_RS16845	0.74	+4.0
3,687,568	-		LRK54_RS16845	0.74	+0.2
3,687,568	-		LRK54_RS16845	0.74	+0.7
3,687,576	+		LRK54_RS16845	0.75	-0.7
3,687,576	+		LRK54_RS16845	0.75	-0.5
3,687,576	+		LRK54_RS16845	0.75	-0.1
3,687,576	+		LRK54_RS16845	0.75	-1.5
3,687,576	+		LRK54_RS16845	0.75	-0.8
3,687,576	+		LRK54_RS16845	0.75	-0.7
3,687,576	+		LRK54_RS16845	0.75	-1.9
3,687,577	-		LRK54_RS16845	0.75	+1.8
3,687,577	-		LRK54_RS16845	0.75	-0.8
3,687,577	-		LRK54_RS16845	0.75	+0.7
3,687,577	-		LRK54_RS16845	0.75	+0.5
3,687,577	-		LRK54_RS16845	0.75	+0.4
3,687,577	-		LRK54_RS16845	0.75	-1.2
3,687,577	-		LRK54_RS16845	0.75	-0.8
3,687,614	+		LRK54_RS16845	0.76	-0.8
3,687,614	+		LRK54_RS16845	0.76	-0.1
3,687,614	+		LRK54_RS16845	0.76	+0.5
3,687,614	+		LRK54_RS16845	0.76	-0.7
3,687,615	-		LRK54_RS16845	0.76	+0.8
3,687,615	-		LRK54_RS16845	0.76	+1.1
3,687,615	-		LRK54_RS16845	0.76	-0.2
3,687,615	-		LRK54_RS16845	0.76	+0.1
3,687,615	-		LRK54_RS16845	0.76	-0.5
3,687,615	-		LRK54_RS16845	0.76	+0.9
3,687,615	-		LRK54_RS16845	0.76	-1.9
3,687,615	-		LRK54_RS16845	0.76	-0.9
3,687,615	-		LRK54_RS16845	0.76	+0.5
3,687,615	-		LRK54_RS16845	0.76	-0.5
3,687,780	+		LRK54_RS16845	0.84	-0.9
3,687,781	-		LRK54_RS16845	0.84	-0.8
3,687,781	-		LRK54_RS16845	0.84	-1.3
3,687,781	-		LRK54_RS16845	0.84	+0.2
3,688,027	+				-1.3
3,688,027	+				-0.2
3,688,027	+				-1.0
3,688,027	+				+0.4
3,688,027	+				+0.4
3,688,027	+				-1.8
3,688,027	+				-0.1
3,688,027	+				-1.6
3,688,027	+				-0.8
3,688,028	-				-0.6
3,688,028	-				-1.0
3,688,028	-				-0.7
3,688,028	-				+0.2
3,688,028	-				-0.6
3,688,028	-				+2.4
3,688,028	-				+0.2
3,688,030	-				+0.4
3,688,030	-				+0.9
3,688,030	-				-1.1
3,688,060	+				+0.5
3,688,060	+				-0.1
3,688,060	+				-2.4
3,688,060	+				-0.3
3,688,060	+				-1.6
3,688,060	+				+1.4
3,688,061	-				+0.4
3,688,061	-				-0.8
3,688,061	-				-0.8
3,688,061	-				+1.4
3,688,149	+				+0.8
3,688,149	+				-1.3
3,688,149	+				-0.1
3,688,149	+				-0.2
3,688,149	+				-0.3
3,688,149	+				-0.5
3,688,149	+				-1.8
3,688,150	-				+0.3
3,688,150	-				+0.1
3,688,150	-				-0.1
3,688,150	-				-2.9
3,688,150	-				-0.8
3,688,150	-				+0.5
3,688,150	-				-2.5
3,688,150	-				-1.2
3,688,188	+				-0.9
3,688,189	-				-0.5
3,688,189	-				+2.0
3,688,189	-				-0.4
3,688,234	+				-1.4
3,688,235	-				-0.4
3,688,235	-				+0.4
3,688,276	+				-1.5
3,688,276	+				+0.6
3,688,277	-				-0.6
3,688,291	+				-0.6
3,688,292	-				-0.6
3,688,292	-				+1.1
3,688,292	-				-1.0
3,688,292	-				-1.3
3,688,363	+		LRK54_RS16850	0.31	-0.1
3,688,364	-		LRK54_RS16850	0.31	-0.6
3,688,364	-		LRK54_RS16850	0.31	-1.6
3,688,392	+		LRK54_RS16850	0.41	+0.2
3,688,392	+		LRK54_RS16850	0.41	-0.2
3,688,392	+		LRK54_RS16850	0.41	+2.1
3,688,392	+		LRK54_RS16850	0.41	+0.1
3,688,393	-		LRK54_RS16850	0.42	-1.2
3,688,393	-		LRK54_RS16850	0.42	-0.2
3,688,393	-		LRK54_RS16850	0.42	+0.1
3,688,393	-		LRK54_RS16850	0.42	-0.1
3,688,393	-		LRK54_RS16850	0.42	+0.5
3,688,393	-		LRK54_RS16850	0.42	+0.4
3,688,393	-		LRK54_RS16850	0.42	+0.1
3,688,393	-		LRK54_RS16850	0.42	-1.9
3,688,418	+		LRK54_RS16850	0.51	+1.4
3,688,418	+		LRK54_RS16850	0.51	-0.9
3,688,418	+		LRK54_RS16850	0.51	-2.1
3,688,418	+		LRK54_RS16850	0.51	-1.3
3,688,418	+		LRK54_RS16850	0.51	+0.4
3,688,418	+		LRK54_RS16850	0.51	+0.2
3,688,418	+		LRK54_RS16850	0.51	+0.8
3,688,418	+		LRK54_RS16850	0.51	-0.9
3,688,419	-		LRK54_RS16850	0.51	-1.9
3,688,419	-		LRK54_RS16850	0.51	-1.9
3,688,419	-		LRK54_RS16850	0.51	-0.3
3,688,477	+		LRK54_RS16850	0.72	-0.2
3,688,488	+		LRK54_RS16850	0.76	-0.2
3,688,520	+		LRK54_RS16850	0.87	-0.8
3,688,520	+		LRK54_RS16850	0.87	-1.1
3,688,521	-		LRK54_RS16850	0.87	+0.6
3,688,521	-		LRK54_RS16850	0.87	+1.8
3,688,522	+		LRK54_RS16850	0.88	+0.8
3,688,523	-		LRK54_RS16850	0.88	-1.0
3,688,523	-		LRK54_RS16850	0.88	+0.3
3,688,523	-		LRK54_RS16850	0.88	-0.4
3,688,528	+				-0.7
3,688,528	+				-1.7
3,688,528	+				-1.4
3,688,528	+				+2.4
3,688,528	+				+0.4
3,688,528	+				-1.1
3,688,528	+				-1.3
3,688,528	+				+0.2
3,688,529	-				+1.1
3,688,529	-				+0.1
3,688,529	-				-0.2
3,688,529	-				+0.2
3,688,529	-				+0.1
3,688,529	-				-1.0
3,688,580	+				-0.3
3,688,580	+				-0.7
3,688,580	+				-1.2
3,688,581	-				+0.3
3,688,581	-				-0.7
3,688,611	+				+0.4
3,688,611	+				-0.4
3,688,611	+				-0.9
3,688,611	+				-0.8
3,688,612	-				-0.4
3,688,612	-				-0.8
3,688,612	-				-0.5
3,688,612	-				+0.0
3,688,636	-				-2.5
3,688,636	-				-0.2
3,688,682	+				-0.3
3,688,682	+				-0.2
3,688,682	+				-0.6
3,688,682	+				+0.2
3,688,682	+				+1.8
3,688,682	+				-0.6
3,688,682	+				-0.6
3,688,682	+				-1.3
3,688,682	+				-1.1
3,688,682	+				+0.4
3,688,682	+				+0.4
3,688,682	+				-0.9
3,688,682	+				+1.1
3,688,682	+				-0.7
3,688,682	+				-0.4
3,688,682	+				-0.5
3,688,682	+				-0.8
3,688,683	-				-1.0
3,688,683	-				+1.1
3,688,683	-				-0.3
3,688,683	-				+0.6
3,688,683	-				-1.2
3,688,699	+				-0.7
3,688,699	+				-1.9
3,688,699	+				+0.3
3,688,699	+				-0.4
3,688,699	+				+0.2
3,688,699	+				-0.2
3,688,699	+				-2.0
3,688,699	+				+0.1
3,688,699	+				+0.5
3,688,699	+				-0.4
3,688,699	+				+0.0
3,688,699	+				-0.9
3,688,699	+				+1.2
3,688,699	+				-0.6
3,688,699	+				+0.3
3,688,700	-				-0.5
3,688,700	-				+1.6
3,688,700	-				+0.3
3,688,700	-				+0.9
3,688,700	-				-0.4
3,688,700	-				+0.2
3,688,700	-				-1.8
3,688,700	-				-0.7
3,688,700	-				-0.2
3,688,700	-				-1.1
3,688,700	-				-0.7
3,688,700	-				-0.9
3,688,700	-				-0.0
3,688,700	-				-0.1
3,688,700	-				-0.9
3,688,700	-				-0.3
3,688,777	+				-0.9
3,688,777	+				+0.1
3,688,777	+				-3.0
3,688,777	+				-2.2
3,688,777	+				+0.7
3,688,777	+				+0.1
3,688,777	+				-0.0
3,688,777	+				+0.7
3,688,777	+				+0.6
3,688,777	+				-0.6
3,688,777	+				+1.0
3,688,778	-				-1.2
3,688,778	-				-1.7
3,688,778	-				-1.8
3,688,778	-				-1.1
3,688,778	-				-2.7
3,688,778	-				-0.1
3,688,807	+				-2.5
3,688,807	+				-0.6
3,688,807	+				-0.6
3,688,808	-				-0.7
3,688,808	-				-0.8
3,688,808	-				+0.4
3,688,808	-				+0.1
3,688,808	-				+0.8
3,688,808	-				-0.5
3,688,822	+				-0.8
3,688,822	+				+0.6
3,688,822	+				-0.4
3,688,823	-				+1.4
3,688,823	-				-2.4
3,688,823	-				-0.0
3,688,823	-				-0.3
3,688,823	-				+0.7
3,688,823	-				-1.7
3,688,823	-				-0.3
3,688,823	-				-0.1
3,688,866	+				+0.6
3,688,866	+				+0.8
3,688,933	+		LRK54_RS16855	0.13	-2.9
3,688,933	+		LRK54_RS16855	0.13	-0.8
3,688,934	-		LRK54_RS16855	0.13	+0.9
3,688,934	-		LRK54_RS16855	0.13	-0.2
3,688,934	-		LRK54_RS16855	0.13	-1.4
3,688,967	+		LRK54_RS16855	0.21	-0.8
3,688,967	+		LRK54_RS16855	0.21	+0.1
3,688,967	+		LRK54_RS16855	0.21	-0.5
3,688,968	-		LRK54_RS16855	0.22	+1.5
3,688,968	-		LRK54_RS16855	0.22	+0.1
3,689,010	+		LRK54_RS16855	0.32	-0.3
3,689,017	-		LRK54_RS16855	0.34	+1.0
3,689,037	-		LRK54_RS16855	0.38	-0.0
3,689,037	-		LRK54_RS16855	0.38	-0.1
3,689,089	+		LRK54_RS16855	0.51	+0.4
3,689,089	+		LRK54_RS16855	0.51	-0.2
3,689,089	+		LRK54_RS16855	0.51	+0.8
3,689,089	+		LRK54_RS16855	0.51	-0.5
3,689,089	+		LRK54_RS16855	0.51	+0.4
3,689,089	+		LRK54_RS16855	0.51	-0.6
3,689,089	+		LRK54_RS16855	0.51	-0.2
3,689,089	+		LRK54_RS16855	0.51	+1.4
3,689,089	+		LRK54_RS16855	0.51	+0.8
3,689,090	-		LRK54_RS16855	0.51	-1.7
3,689,090	-		LRK54_RS16855	0.51	+0.1
3,689,090	-		LRK54_RS16855	0.51	-0.1
3,689,090	-		LRK54_RS16855	0.51	+0.3
3,689,090	-		LRK54_RS16855	0.51	+1.2
3,689,090	-		LRK54_RS16855	0.51	-0.8
3,689,090	-		LRK54_RS16855	0.51	+0.4
3,689,090	-		LRK54_RS16855	0.51	+0.0
3,689,165	+		LRK54_RS16855	0.70	-0.7
3,689,165	+		LRK54_RS16855	0.70	-1.5
3,689,165	+		LRK54_RS16855	0.70	+0.9
3,689,165	+		LRK54_RS16855	0.70	-0.6
3,689,165	+		LRK54_RS16855	0.70	+1.5
3,689,165	+		LRK54_RS16855	0.70	-1.1
3,689,166	-		LRK54_RS16855	0.70	-0.6
3,689,166	-		LRK54_RS16855	0.70	-0.3
3,689,166	-		LRK54_RS16855	0.70	+0.1
3,689,166	-		LRK54_RS16855	0.70	+0.5
3,689,166	-		LRK54_RS16855	0.70	-0.2
3,689,166	-		LRK54_RS16855	0.70	+0.1
3,689,166	-		LRK54_RS16855	0.70	-0.0
3,689,166	-		LRK54_RS16855	0.70	-1.5
3,689,166	-		LRK54_RS16855	0.70	-0.6
3,689,166	-		LRK54_RS16855	0.70	+0.1
3,689,166	-		LRK54_RS16855	0.70	-0.4
3,689,174	+		LRK54_RS16855	0.72	-2.1
3,689,174	+		LRK54_RS16855	0.72	-0.1
3,689,174	+		LRK54_RS16855	0.72	-1.1
3,689,174	+		LRK54_RS16855	0.72	-1.3
3,689,174	+		LRK54_RS16855	0.72	-0.3
3,689,174	+		LRK54_RS16855	0.72	+1.1
3,689,174	+		LRK54_RS16855	0.72	-0.4
3,689,174	+		LRK54_RS16855	0.72	-0.1
3,689,174	+		LRK54_RS16855	0.72	-2.4
3,689,174	+		LRK54_RS16855	0.72	-0.4
3,689,174	+		LRK54_RS16855	0.72	-0.8
3,689,174	+		LRK54_RS16855	0.72	-1.2
3,689,174	+		LRK54_RS16855	0.72	+1.4
3,689,174	+		LRK54_RS16855	0.72	-1.1
3,689,175	-		LRK54_RS16855	0.72	-0.1
3,689,175	-		LRK54_RS16855	0.72	-1.0
3,689,175	-		LRK54_RS16855	0.72	-0.8
3,689,175	-		LRK54_RS16855	0.72	-1.7
3,689,175	-		LRK54_RS16855	0.72	-0.3
3,689,175	-		LRK54_RS16855	0.72	+2.0
3,689,175	-		LRK54_RS16855	0.72	-0.1
3,689,175	-		LRK54_RS16855	0.72	-0.1
3,689,175	-		LRK54_RS16855	0.72	-0.0
3,689,175	-		LRK54_RS16855	0.72	-0.2
3,689,175	-		LRK54_RS16855	0.72	+2.0
3,689,175	-		LRK54_RS16855	0.72	+0.1
3,689,175	-		LRK54_RS16855	0.72	+2.0
3,689,175	-		LRK54_RS16855	0.72	-1.8
3,689,175	-		LRK54_RS16855	0.72	-3.1
3,689,175	-		LRK54_RS16855	0.72	+0.2
3,689,175	-		LRK54_RS16855	0.72	-1.5
3,689,175	-		LRK54_RS16855	0.72	+0.2
3,689,175	-		LRK54_RS16855	0.72	-0.4
3,689,238	+		LRK54_RS16855	0.88	+1.2
3,689,238	+		LRK54_RS16855	0.88	-0.3
3,689,238	+		LRK54_RS16855	0.88	-0.0
3,689,238	+		LRK54_RS16855	0.88	-0.4
3,689,238	+		LRK54_RS16855	0.88	-1.4
3,689,238	+		LRK54_RS16855	0.88	-1.2
3,689,238	+		LRK54_RS16855	0.88	-0.6
3,689,238	+		LRK54_RS16855	0.88	-1.3
3,689,238	+		LRK54_RS16855	0.88	-0.2
3,689,238	+		LRK54_RS16855	0.88	-0.7
3,689,238	+		LRK54_RS16855	0.88	-0.8
3,689,238	+		LRK54_RS16855	0.88	+0.2
3,689,238	+		LRK54_RS16855	0.88	+0.1
3,689,238	+		LRK54_RS16855	0.88	-0.0
3,689,238	+		LRK54_RS16855	0.88	+0.2
3,689,238	+		LRK54_RS16855	0.88	-0.5
3,689,238	+		LRK54_RS16855	0.88	+1.2
3,689,238	+		LRK54_RS16855	0.88	-0.6
3,689,239	-		LRK54_RS16855	0.88	+0.9
3,689,239	-		LRK54_RS16855	0.88	-0.8
3,689,239	-		LRK54_RS16855	0.88	-0.2
3,689,239	-		LRK54_RS16855	0.88	-0.5
3,689,239	-		LRK54_RS16855	0.88	+1.2
3,689,239	-		LRK54_RS16855	0.88	-0.5
3,689,239	-		LRK54_RS16855	0.88	-0.4
3,689,239	-		LRK54_RS16855	0.88	+0.2
3,689,239	-		LRK54_RS16855	0.88	-0.2
3,689,239	-		LRK54_RS16855	0.88	-1.6
3,689,239	-		LRK54_RS16855	0.88	+1.0
3,689,239	-		LRK54_RS16855	0.88	-1.2
3,689,239	-		LRK54_RS16855	0.88	+0.8
3,689,239	-		LRK54_RS16855	0.88	+1.6
3,689,239	-		LRK54_RS16855	0.88	+0.2
3,689,239	-		LRK54_RS16855	0.88	-0.9
3,689,239	-		LRK54_RS16855	0.88	-0.1
3,689,239	-		LRK54_RS16855	0.88	-0.5
3,689,239	-		LRK54_RS16855	0.88	+1.0
3,689,239	-		LRK54_RS16855	0.88	-0.4
3,689,239	-		LRK54_RS16855	0.88	-0.8
3,689,257	+				+0.4
3,689,257	+				-1.8
3,689,258	-				+0.1
3,689,258	-				-0.4
3,689,258	-				-2.0
3,689,258	-				-0.3
3,689,258	-				+0.9
3,689,258	-				+0.2
3,689,360	+				+0.2
3,689,360	+				-0.9
3,689,360	+				+1.1
3,689,360	+				-0.7
3,689,360	+				+0.3
3,689,360	+				+0.4
3,689,360	+				-0.3
3,689,360	+				-0.6
3,689,360	+				+0.5
3,689,360	+				-1.8
3,689,360	+				-0.9
3,689,360	+				+1.6
3,689,360	+				+0.8
3,689,361	-				-0.2
3,689,361	-				-0.4
3,689,361	-				-1.1
3,689,361	-				+0.4
3,689,361	-				+0.0
3,689,361	-				+2.1
3,689,361	-				-0.0
3,689,361	-				+0.5
3,689,361	-				-0.8
3,689,361	-				+0.3
3,689,361	-				-1.1
3,689,460	+				-1.6
3,689,461	-				+0.9
3,689,461	-				+0.8
3,689,473	-				+0.3
3,689,473	-				-0.1