Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15155

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
3,345,864	+		LRK54_RS15150	0.47	+1.2
3,345,864	+		LRK54_RS15150	0.47	+0.8
3,345,865	-		LRK54_RS15150	0.48	+1.0
3,345,865	-		LRK54_RS15150	0.48	-0.2
3,346,167	+		LRK54_RS15150	0.64	-0.7
3,346,167	+		LRK54_RS15150	0.64	-1.0
3,346,167	+		LRK54_RS15150	0.64	-0.3
3,346,254	+		LRK54_RS15150	0.69	+0.2
3,346,281	+		LRK54_RS15150	0.70	-1.9
3,346,281	+		LRK54_RS15150	0.70	-0.5
3,346,281	+		LRK54_RS15150	0.70	+1.4
3,346,281	+		LRK54_RS15150	0.70	+0.6
3,346,281	+		LRK54_RS15150	0.70	+2.7
3,346,281	+		LRK54_RS15150	0.70	-2.0
3,346,281	+		LRK54_RS15150	0.70	-0.1
3,346,281	+		LRK54_RS15150	0.70	+0.3
3,346,281	+		LRK54_RS15150	0.70	+2.4
3,346,281	+		LRK54_RS15150	0.70	+0.0
3,346,281	+		LRK54_RS15150	0.70	+0.8
3,346,281	+		LRK54_RS15150	0.70	+0.9
3,346,281	+		LRK54_RS15150	0.70	-0.4
3,346,281	+		LRK54_RS15150	0.70	-0.0
3,346,281	+		LRK54_RS15150	0.70	+0.7
3,346,281	+		LRK54_RS15150	0.70	+1.9
3,346,281	+		LRK54_RS15150	0.70	-0.5
3,346,281	+		LRK54_RS15150	0.70	-0.9
3,346,281	+		LRK54_RS15150	0.70	-1.5
3,346,281	+		LRK54_RS15150	0.70	-0.1
3,346,281	+		LRK54_RS15150	0.70	-1.3
3,346,281	+		LRK54_RS15150	0.70	+1.2
3,346,281	+		LRK54_RS15150	0.70	+0.3
3,346,281	+		LRK54_RS15150	0.70	+0.3
3,346,281	+		LRK54_RS15150	0.70	-0.1
3,346,281	+		LRK54_RS15150	0.70	-0.2
3,346,281	+		LRK54_RS15150	0.70	-0.4
3,346,281	+		LRK54_RS15150	0.70	-0.7
3,346,281	+		LRK54_RS15150	0.70	-1.2
3,346,281	+		LRK54_RS15150	0.70	+0.3
3,346,281	+		LRK54_RS15150	0.70	-0.7
3,346,281	+		LRK54_RS15150	0.70	-0.3
3,346,282	-		LRK54_RS15150	0.70	-0.2
3,346,282	-		LRK54_RS15150	0.70	-2.3
3,346,282	-		LRK54_RS15150	0.70	-0.7
3,346,282	-		LRK54_RS15150	0.70	+0.7
3,346,282	-		LRK54_RS15150	0.70	-1.2
3,346,282	-		LRK54_RS15150	0.70	-0.4
3,346,282	-		LRK54_RS15150	0.70	+0.4
3,346,282	-		LRK54_RS15150	0.70	-0.1
3,346,282	-		LRK54_RS15150	0.70	+0.4
3,346,282	-		LRK54_RS15150	0.70	+0.9
3,346,282	-		LRK54_RS15150	0.70	+0.1
3,346,282	-		LRK54_RS15150	0.70	+1.4
3,346,282	-		LRK54_RS15150	0.70	-1.5
3,346,282	-		LRK54_RS15150	0.70	+0.4
3,346,282	-		LRK54_RS15150	0.70	+0.2
3,346,282	-		LRK54_RS15150	0.70	+0.1
3,346,282	-		LRK54_RS15150	0.70	-0.2
3,346,282	-		LRK54_RS15150	0.70	+0.5
3,346,282	-		LRK54_RS15150	0.70	+0.8
3,346,282	-		LRK54_RS15150	0.70	-0.4
3,346,282	-		LRK54_RS15150	0.70	-0.3
3,346,282	-		LRK54_RS15150	0.70	+1.2
3,346,282	-		LRK54_RS15150	0.70	-0.4
3,346,282	-		LRK54_RS15150	0.70	-0.1
3,346,282	-		LRK54_RS15150	0.70	-1.2
3,346,282	-		LRK54_RS15150	0.70	-1.2
3,346,282	-		LRK54_RS15150	0.70	+2.4
3,346,282	-		LRK54_RS15150	0.70	-0.7
3,346,282	-		LRK54_RS15150	0.70	+0.4
3,346,282	-		LRK54_RS15150	0.70	-1.8
3,346,282	-		LRK54_RS15150	0.70	-1.4
3,346,350	+		LRK54_RS15150	0.74	-0.8
3,346,350	+		LRK54_RS15150	0.74	-0.8
3,346,350	+		LRK54_RS15150	0.74	+0.3
3,346,350	+		LRK54_RS15150	0.74	-0.7
3,346,350	+		LRK54_RS15150	0.74	+1.3
3,346,350	+		LRK54_RS15150	0.74	+1.4
3,346,350	+		LRK54_RS15150	0.74	-0.4
3,346,350	+		LRK54_RS15150	0.74	+0.5
3,346,350	+		LRK54_RS15150	0.74	-0.1
3,346,350	+		LRK54_RS15150	0.74	+1.1
3,346,350	+		LRK54_RS15150	0.74	-1.1
3,346,350	+		LRK54_RS15150	0.74	+0.2
3,346,350	+		LRK54_RS15150	0.74	-0.2
3,346,350	+		LRK54_RS15150	0.74	+0.8
3,346,351	-		LRK54_RS15150	0.74	+2.8
3,346,351	-		LRK54_RS15150	0.74	-0.5
3,346,351	-		LRK54_RS15150	0.74	-3.0
3,346,351	-		LRK54_RS15150	0.74	+0.4
3,346,351	-		LRK54_RS15150	0.74	+0.6
3,346,351	-		LRK54_RS15150	0.74	+0.3
3,346,351	-		LRK54_RS15150	0.74	+0.9
3,346,351	-		LRK54_RS15150	0.74	-0.2
3,346,351	-		LRK54_RS15150	0.74	-0.0
3,346,861	+				-0.3
3,346,861	+				+0.5
3,346,861	+				+0.9
3,346,861	+				+0.3
3,346,861	+				+0.8
3,346,861	+				+0.3
3,346,861	+				+1.7
3,346,861	+				-1.0
3,346,861	+				-0.0
3,346,861	+				-0.5
3,346,861	+				+0.1
3,346,861	+				+1.4
3,346,861	+				+0.6
3,346,861	+				-0.6
3,346,861	+				-0.3
3,346,861	+				+0.2
3,346,861	+				-2.0
3,346,861	+				-0.3
3,346,861	+				-0.9
3,346,862	-				-0.6
3,346,862	-				+1.1
3,346,862	-				-0.0
3,346,862	-				-1.3
3,346,862	-				+1.3
3,346,862	-				-0.2
3,346,862	-				+0.3
3,346,862	-				+0.0
3,346,862	-				+0.4
3,346,862	-				-0.7
3,346,862	-				-0.5
3,346,862	-				+0.2
3,346,862	-				-0.3
3,346,862	-				-0.3
3,346,862	-				+0.4
3,346,862	-				-0.4
3,346,862	-				-2.1
3,346,862	-				-0.2
3,346,862	-				-0.6
3,346,862	-				-0.4
3,346,862	-				-0.5
3,346,862	-				-0.9
3,346,862	-				+1.6
3,346,862	-				-0.4
3,346,862	-				+0.1
3,346,862	-				-0.3
3,346,862	-				+1.0
3,346,862	-				-0.6
3,346,862	-				-0.3
3,346,865	+				-0.5
3,346,865	+				-0.3
3,346,865	+				+0.1
3,346,865	+				-0.6
3,346,865	+				-0.1
3,346,865	+				-0.9
3,346,865	+				-1.1
3,346,865	+				-0.2
3,346,865	+				-1.0
3,346,865	+				+0.8
3,346,865	+				-1.4
3,346,865	+				+1.7
3,346,865	+				+0.4
3,346,865	+				+0.7
3,346,865	+				-0.9
3,346,865	+				+0.1
3,346,865	+				+0.4
3,346,865	+				-1.3
3,346,866	-				+0.0
3,346,866	-				+1.7
3,346,866	-				+0.1
3,346,866	-				-0.3
3,346,866	-				+0.1
3,346,866	-				-0.2
3,346,866	-				-0.2
3,346,866	-				-0.6
3,346,866	-				+1.3
3,346,866	-				-0.5
3,346,866	-				+0.4
3,346,866	-				+1.6
3,346,866	-				+0.7
3,346,866	-				-3.1
3,346,932	+				+2.0
3,346,932	+				+0.1
3,346,932	+				+1.8
3,346,932	+				+1.3
3,346,932	+				+1.4
3,346,932	+				-0.6
3,346,932	+				+0.2
3,346,932	+				-0.1
3,346,932	+				-1.1
3,346,932	+				+2.3
3,346,932	+				-0.9
3,346,932	+				-2.6
3,346,932	+				-1.1
3,346,932	+				-0.3
3,346,932	+				+3.2
3,346,932	+				-1.1
3,346,932	+				+0.1
3,346,932	+				+0.0
3,346,932	+				-2.0
3,346,932	+				-0.2
3,346,932	+				-2.0
3,346,932	+				+0.2
3,346,932	+				+0.7
3,346,932	+				+1.6
3,346,932	+				-0.0
3,346,932	+				+0.5
3,346,933	-				-1.7
3,346,933	-				+0.4
3,346,933	-				-0.0
3,346,933	-				-0.7
3,346,933	-				-0.6
3,346,933	-				-0.3
3,346,933	-				+1.4
3,346,933	-				-1.0
3,346,933	-				-0.9
3,346,933	-				+1.4
3,346,933	-				+1.6
3,346,933	-				-0.1
3,346,933	-				+0.6
3,346,933	-				+1.6
3,346,933	-				-0.9
3,346,933	-				-0.6
3,346,933	-				-1.1
3,346,933	-				-0.4
3,346,933	-				+0.7
3,346,933	-				+0.3
3,346,933	-				+2.3
3,346,933	-				+0.8
3,346,933	-				+0.6
3,346,933	-				-0.4
3,346,933	-				-0.9
3,346,933	-				+1.8
3,346,933	-				+0.4
3,346,933	-				-1.2
3,346,933	-				+0.6
3,347,262	+		LRK54_RS15155	0.45	-1.4
3,347,262	+		LRK54_RS15155	0.45	-0.2
3,347,262	+		LRK54_RS15155	0.45	-0.1
3,347,262	+		LRK54_RS15155	0.45	+0.4
3,347,262	+		LRK54_RS15155	0.45	+0.5
3,347,262	+		LRK54_RS15155	0.45	-0.8
3,347,262	+		LRK54_RS15155	0.45	-1.8
3,347,262	+		LRK54_RS15155	0.45	-0.0
3,347,263	-		LRK54_RS15155	0.45	-1.2
3,347,263	-		LRK54_RS15155	0.45	-0.3
3,347,263	-		LRK54_RS15155	0.45	-1.0
3,347,263	-		LRK54_RS15155	0.45	+0.8
3,347,263	-		LRK54_RS15155	0.45	+0.3
3,347,263	-		LRK54_RS15155	0.45	-0.2
3,347,263	-		LRK54_RS15155	0.45	+0.7
3,347,263	-		LRK54_RS15155	0.45	-0.7
3,347,263	-		LRK54_RS15155	0.45	-0.7
3,347,263	-		LRK54_RS15155	0.45	-0.4
3,347,263	-		LRK54_RS15155	0.45	+0.3
3,347,448	+		LRK54_RS15155	0.65	-1.7
3,347,448	+		LRK54_RS15155	0.65	-2.3
3,347,448	+		LRK54_RS15155	0.65	-0.0
3,347,448	+		LRK54_RS15155	0.65	-0.6
3,347,448	+		LRK54_RS15155	0.65	-0.6
3,347,449	-		LRK54_RS15155	0.65	-0.9
3,347,449	-		LRK54_RS15155	0.65	+0.7
3,347,449	-		LRK54_RS15155	0.65	+0.1
3,347,449	-		LRK54_RS15155	0.65	+0.5
3,347,535	+		LRK54_RS15155	0.75	+0.6
3,347,535	+		LRK54_RS15155	0.75	+0.1
3,347,535	+		LRK54_RS15155	0.75	+0.3
3,347,535	+		LRK54_RS15155	0.75	+1.0
3,347,535	+		LRK54_RS15155	0.75	-0.5
3,347,535	+		LRK54_RS15155	0.75	-1.3
3,347,535	+		LRK54_RS15155	0.75	+0.8
3,347,535	+		LRK54_RS15155	0.75	+0.6
3,347,535	+		LRK54_RS15155	0.75	-0.6
3,347,536	-		LRK54_RS15155	0.75	-0.3
3,347,536	-		LRK54_RS15155	0.75	-0.3
3,347,536	-		LRK54_RS15155	0.75	-2.4
3,347,536	-		LRK54_RS15155	0.75	+0.8
3,347,536	-		LRK54_RS15155	0.75	+0.4
3,347,536	-		LRK54_RS15155	0.75	+0.1
3,347,536	-		LRK54_RS15155	0.75	-0.9
3,347,536	-		LRK54_RS15155	0.75	+1.4
3,347,536	-		LRK54_RS15155	0.75	+1.0
3,347,536	-		LRK54_RS15155	0.75	+1.9
3,347,536	-		LRK54_RS15155	0.75	+0.1
3,347,536	-		LRK54_RS15155	0.75	-0.4
3,347,536	-		LRK54_RS15155	0.75	-0.6
3,347,536	-		LRK54_RS15155	0.75	-2.2
3,347,577	+		LRK54_RS15155	0.79	-0.9
3,347,577	+		LRK54_RS15155	0.79	-0.1
3,347,577	+		LRK54_RS15155	0.79	-2.3
3,347,577	+		LRK54_RS15155	0.79	+0.1
3,347,577	+		LRK54_RS15155	0.79	-0.1
3,347,577	+		LRK54_RS15155	0.79	+0.3
3,347,577	+		LRK54_RS15155	0.79	-2.0
3,347,577	+		LRK54_RS15155	0.79	-1.0
3,347,577	+		LRK54_RS15155	0.79	+0.3
3,347,577	+		LRK54_RS15155	0.79	+0.8
3,347,577	+		LRK54_RS15155	0.79	+0.4
3,347,577	+		LRK54_RS15155	0.79	+0.9
3,347,577	+		LRK54_RS15155	0.79	-1.4
3,347,577	+		LRK54_RS15155	0.79	+0.1
3,347,577	+		LRK54_RS15155	0.79	+0.2
3,347,577	+		LRK54_RS15155	0.79	-1.6
3,347,578	-		LRK54_RS15155	0.80	-0.7
3,347,578	-		LRK54_RS15155	0.80	-2.8
3,347,578	-		LRK54_RS15155	0.80	-1.2
3,347,578	-		LRK54_RS15155	0.80	-0.1
3,347,578	-		LRK54_RS15155	0.80	-1.8
3,347,578	-		LRK54_RS15155	0.80	+0.6
3,347,578	-		LRK54_RS15155	0.80	-0.1
3,347,578	-		LRK54_RS15155	0.80	-1.7
3,347,578	-		LRK54_RS15155	0.80	-2.4
3,347,598	+		LRK54_RS15155	0.82	+0.3
3,347,598	+		LRK54_RS15155	0.82	-0.7
3,347,598	+		LRK54_RS15155	0.82	+0.4
3,347,598	+		LRK54_RS15155	0.82	+1.6
3,347,598	+		LRK54_RS15155	0.82	+1.0
3,347,598	+		LRK54_RS15155	0.82	+0.6
3,347,598	+		LRK54_RS15155	0.82	-0.4
3,347,598	+		LRK54_RS15155	0.82	+1.3
3,347,598	+		LRK54_RS15155	0.82	+0.7
3,347,598	+		LRK54_RS15155	0.82	-0.7
3,347,598	+		LRK54_RS15155	0.82	+1.6
3,347,598	+		LRK54_RS15155	0.82	-1.7
3,347,598	+		LRK54_RS15155	0.82	-1.3
3,347,598	+		LRK54_RS15155	0.82	-0.2
3,347,598	+		LRK54_RS15155	0.82	-0.4
3,347,598	+		LRK54_RS15155	0.82	-0.7
3,347,599	-		LRK54_RS15155	0.82	+0.1
3,347,599	-		LRK54_RS15155	0.82	-0.7
3,347,599	-		LRK54_RS15155	0.82	-0.4
3,347,599	-		LRK54_RS15155	0.82	+0.2
3,347,599	-		LRK54_RS15155	0.82	-0.6
3,347,599	-		LRK54_RS15155	0.82	+0.7
3,347,599	-		LRK54_RS15155	0.82	+0.6
3,347,599	-		LRK54_RS15155	0.82	+1.3
3,347,599	-		LRK54_RS15155	0.82	-0.9
3,347,599	-		LRK54_RS15155	0.82	+0.2
3,347,599	-		LRK54_RS15155	0.82	-1.6
3,347,599	-		LRK54_RS15155	0.82	-1.9
3,347,599	-		LRK54_RS15155	0.82	-1.4
3,347,599	-		LRK54_RS15155	0.82	-1.0
3,347,599	-		LRK54_RS15155	0.82	-1.0
3,347,599	-		LRK54_RS15155	0.82	+2.4
3,347,599	-		LRK54_RS15155	0.82	-0.5
3,347,599	-		LRK54_RS15155	0.82	-0.8
3,347,649	+		LRK54_RS15155	0.87	-0.0
3,347,649	+		LRK54_RS15155	0.87	-0.5
3,347,649	+		LRK54_RS15155	0.87	+0.2
3,347,649	+		LRK54_RS15155	0.87	-1.1
3,347,649	+		LRK54_RS15155	0.87	-1.8
3,347,649	+		LRK54_RS15155	0.87	-2.1
3,347,649	+		LRK54_RS15155	0.87	+1.9
3,347,649	+		LRK54_RS15155	0.87	+0.4
3,347,649	+		LRK54_RS15155	0.87	+0.1
3,347,649	+		LRK54_RS15155	0.87	-0.6
3,347,649	+		LRK54_RS15155	0.87	+0.5
3,347,649	+		LRK54_RS15155	0.87	-2.8
3,347,650	-		LRK54_RS15155	0.88	+1.4
3,347,650	-		LRK54_RS15155	0.88	-2.6
3,347,650	-		LRK54_RS15155	0.88	-0.3
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3,348,298	-		LRK54_RS15160	0.83	-0.7
3,348,306	+		LRK54_RS15160	0.84	-1.9
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