Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09780

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
2,134,247	+				-0.1
2,134,247	+				+1.1
2,134,248	-				-0.2
2,134,512	+		LRK54_RS09775	0.38	-0.4
2,134,512	+		LRK54_RS09775	0.38	+0.4
2,134,512	+		LRK54_RS09775	0.38	-0.1
2,134,512	+		LRK54_RS09775	0.38	-3.5
2,134,512	+		LRK54_RS09775	0.38	-1.3
2,134,512	+		LRK54_RS09775	0.38	-1.5
2,134,512	+		LRK54_RS09775	0.38	-2.1
2,134,512	+		LRK54_RS09775	0.38	-1.8
2,134,512	+		LRK54_RS09775	0.38	+0.9
2,134,512	+		LRK54_RS09775	0.38	-0.6
2,134,512	+				+1.4
2,134,512	+		LRK54_RS09775	0.38	-1.8
2,134,512	+		LRK54_RS09775	0.38	-0.3
2,134,512	+		LRK54_RS09775	0.38	-0.7
2,134,512	+		LRK54_RS09775	0.38	+0.7
2,134,512	+		LRK54_RS09775	0.38	-0.2
2,134,512	+		LRK54_RS09775	0.38	+0.2
2,134,513	-		LRK54_RS09775	0.38	-0.7
2,134,513	-		LRK54_RS09775	0.38	-1.3
2,134,513	-		LRK54_RS09775	0.38	-1.2
2,134,513	-		LRK54_RS09775	0.38	-2.0
2,134,513	-		LRK54_RS09775	0.38	-1.4
2,134,513	-		LRK54_RS09775	0.38	-2.2
2,134,513	-		LRK54_RS09775	0.38	-0.5
2,134,513	-		LRK54_RS09775	0.38	-1.0
2,134,513	-		LRK54_RS09775	0.38	-1.6
2,134,513	-		LRK54_RS09775	0.38	-1.6
2,134,513	-		LRK54_RS09775	0.38	-1.3
2,134,513	-		LRK54_RS09775	0.38	-0.6
2,134,513	-		LRK54_RS09775	0.38	+0.2
2,134,513	-		LRK54_RS09775	0.38	-0.7
2,134,723	+		LRK54_RS09775	0.65	-1.6
2,134,723	+		LRK54_RS09775	0.65	+0.4
2,134,723	+		LRK54_RS09775	0.65	-1.1
2,134,723	+		LRK54_RS09775	0.65	-1.0
2,134,723	+		LRK54_RS09775	0.65	-0.7
2,134,723	+		LRK54_RS09775	0.65	-1.3
2,134,723	+		LRK54_RS09775	0.65	-2.2
2,134,723	+		LRK54_RS09775	0.65	-0.4
2,134,723	+		LRK54_RS09775	0.65	+2.0
2,134,723	+		LRK54_RS09775	0.65	-0.6
2,134,723	+		LRK54_RS09775	0.65	-1.4
2,134,723	+		LRK54_RS09775	0.65	-1.7
2,134,723	+		LRK54_RS09775	0.65	+0.7
2,134,723	+		LRK54_RS09775	0.65	-2.6
2,134,723	+		LRK54_RS09775	0.65	-0.6
2,134,723	+		LRK54_RS09775	0.65	-1.1
2,134,723	+		LRK54_RS09775	0.65	-3.4
2,134,723	+		LRK54_RS09775	0.65	-0.7
2,134,723	+		LRK54_RS09775	0.65	-0.8
2,134,723	+		LRK54_RS09775	0.65	-1.4
2,134,723	+		LRK54_RS09775	0.65	-2.5
2,134,723	+		LRK54_RS09775	0.65	-0.1
2,134,723	+		LRK54_RS09775	0.65	-1.3
2,134,723	+		LRK54_RS09775	0.65	-1.8
2,134,723	+		LRK54_RS09775	0.65	-1.4
2,134,723	+		LRK54_RS09775	0.65	-0.7
2,134,723	+		LRK54_RS09775	0.65	-0.6
2,134,723	+		LRK54_RS09775	0.65	-1.0
2,134,723	+		LRK54_RS09775	0.65	+0.9
2,134,723	+		LRK54_RS09775	0.65	-1.6
2,134,723	+		LRK54_RS09775	0.65	-0.6
2,134,723	+		LRK54_RS09775	0.65	-0.1
2,134,724	-		LRK54_RS09775	0.65	-2.4
2,134,724	-		LRK54_RS09775	0.65	-0.7
2,134,724	-		LRK54_RS09775	0.65	-0.6
2,134,724	-		LRK54_RS09775	0.65	-1.2
2,134,724	-		LRK54_RS09775	0.65	+0.1
2,134,724	-		LRK54_RS09775	0.65	-2.4
2,134,724	-		LRK54_RS09775	0.65	-1.1
2,134,724	-		LRK54_RS09775	0.65	-2.4
2,134,724	-		LRK54_RS09775	0.65	-2.2
2,134,724	-		LRK54_RS09775	0.65	-1.3
2,134,724	-		LRK54_RS09775	0.65	-2.8
2,134,724	-		LRK54_RS09775	0.65	-0.9
2,134,724	-		LRK54_RS09775	0.65	-0.3
2,134,724	-		LRK54_RS09775	0.65	+1.4
2,134,724	-		LRK54_RS09775	0.65	-1.0
2,134,724	-		LRK54_RS09775	0.65	-0.1
2,134,724	-		LRK54_RS09775	0.65	-0.4
2,134,724	-		LRK54_RS09775	0.65	-1.7
2,134,724	-		LRK54_RS09775	0.65	-1.0
2,134,724	-		LRK54_RS09775	0.65	-0.6
2,134,724	-		LRK54_RS09775	0.65	-1.5
2,134,724	-		LRK54_RS09775	0.65	-1.1
2,134,724	-		LRK54_RS09775	0.65	-0.1
2,134,724	-		LRK54_RS09775	0.65	-1.5
2,134,724	-		LRK54_RS09775	0.65	-2.5
2,134,724	-		LRK54_RS09775	0.65	-0.9
2,134,724	-		LRK54_RS09775	0.65	-0.6
2,134,724	-		LRK54_RS09775	0.65	-0.9
2,134,724	-		LRK54_RS09775	0.65	-1.6
2,134,724	-		LRK54_RS09775	0.65	-1.6
2,135,235	+		LRK54_RS09780	0.20	-0.6
2,135,235	+		LRK54_RS09780	0.20	-0.3
2,135,235	+		LRK54_RS09780	0.20	-2.6
2,135,235	+		LRK54_RS09780	0.20	-1.1
2,135,235	+		LRK54_RS09780	0.20	+0.9
2,135,235	+		LRK54_RS09780	0.20	+1.4
2,135,235	+		LRK54_RS09780	0.20	-0.9
2,135,235	+		LRK54_RS09780	0.20	-1.4
2,135,236	-		LRK54_RS09780	0.20	+0.6
2,135,236	-		LRK54_RS09780	0.20	-0.6
2,135,236	-		LRK54_RS09780	0.20	+2.1
2,135,236	-		LRK54_RS09780	0.20	-1.4
2,135,236	-		LRK54_RS09780	0.20	-1.8
2,135,236	-		LRK54_RS09780	0.20	-2.2
2,135,236	-		LRK54_RS09780	0.20	-2.2
2,135,236	-		LRK54_RS09780	0.20	-0.9
2,135,340	+		LRK54_RS09780	0.28	-0.9
2,135,340	+		LRK54_RS09780	0.28	-0.3
2,135,340	+		LRK54_RS09780	0.28	+0.3
2,135,340	+		LRK54_RS09780	0.28	-0.7
2,135,340	+		LRK54_RS09780	0.28	-1.2
2,135,340	+		LRK54_RS09780	0.28	-3.5
2,135,340	+		LRK54_RS09780	0.28	-1.3
2,135,340	+		LRK54_RS09780	0.28	-1.4
2,135,340	+		LRK54_RS09780	0.28	+0.6
2,135,340	+		LRK54_RS09780	0.28	-0.1
2,135,340	+		LRK54_RS09780	0.28	-2.0
2,135,340	+		LRK54_RS09780	0.28	-1.1
2,135,340	+		LRK54_RS09780	0.28	-3.8
2,135,340	+		LRK54_RS09780	0.28	+0.1
2,135,340	+		LRK54_RS09780	0.28	+0.4
2,135,340	+		LRK54_RS09780	0.28	+0.9
2,135,340	+		LRK54_RS09780	0.28	+3.0
2,135,340	+		LRK54_RS09780	0.28	-1.4
2,135,340	+		LRK54_RS09780	0.28	-1.4
2,135,340	+		LRK54_RS09780	0.28	+0.1
2,135,340	+		LRK54_RS09780	0.28	-1.2
2,135,340	+		LRK54_RS09780	0.28	+0.1
2,135,340	+		LRK54_RS09780	0.28	+0.9
2,135,340	+		LRK54_RS09780	0.28	-0.9
2,135,340	+		LRK54_RS09780	0.28	-0.6
2,135,340	+		LRK54_RS09780	0.28	-1.7
2,135,340	+		LRK54_RS09780	0.28	+0.9
2,135,340	+		LRK54_RS09780	0.28	-2.1
2,135,340	+		LRK54_RS09780	0.28	-1.2
2,135,340	+		LRK54_RS09780	0.28	-0.6
2,135,340	+		LRK54_RS09780	0.28	-0.1
2,135,340	+		LRK54_RS09780	0.28	-1.0
2,135,340	+		LRK54_RS09780	0.28	-1.5
2,135,340	+		LRK54_RS09780	0.28	-0.1
2,135,340	+		LRK54_RS09780	0.28	-1.8
2,135,340	+		LRK54_RS09780	0.28	-0.6
2,135,340	+		LRK54_RS09780	0.28	+0.3
2,135,340	+		LRK54_RS09780	0.28	-0.7
2,135,341	-		LRK54_RS09780	0.29	-0.8
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.0
2,135,341	-		LRK54_RS09780	0.29	-1.3
2,135,341	-		LRK54_RS09780	0.29	-1.4
2,135,341	-		LRK54_RS09780	0.29	+0.9
2,135,341	-		LRK54_RS09780	0.29	-3.6
2,135,341	-		LRK54_RS09780	0.29	-1.0
2,135,341	-		LRK54_RS09780	0.29	+0.4
2,135,341	-		LRK54_RS09780	0.29	-0.7
2,135,341	-		LRK54_RS09780	0.29	-0.9
2,135,341	-		LRK54_RS09780	0.29	-1.1
2,135,341	-		LRK54_RS09780	0.29	-1.6
2,135,341	-		LRK54_RS09780	0.29	-0.9
2,135,341	-		LRK54_RS09780	0.29	-2.7
2,135,341	-		LRK54_RS09780	0.29	-2.6
2,135,341	-		LRK54_RS09780	0.29	-0.8
2,135,341	-		LRK54_RS09780	0.29	-1.2
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.4
2,135,341	-		LRK54_RS09780	0.29	+0.7
2,135,341	-		LRK54_RS09780	0.29	-1.2
2,135,341	-		LRK54_RS09780	0.29	-2.4
2,135,341	-		LRK54_RS09780	0.29	-1.8
2,135,341	-		LRK54_RS09780	0.29	-1.3
2,135,341	-		LRK54_RS09780	0.29	-0.4
2,135,341	-		LRK54_RS09780	0.29	-0.6
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.9
2,135,341	-		LRK54_RS09780	0.29	-1.4
2,135,341	-		LRK54_RS09780	0.29	-0.4
2,135,341	-		LRK54_RS09780	0.29	-0.4
2,135,341	-		LRK54_RS09780	0.29	+0.9
2,135,341	-		LRK54_RS09780	0.29	-2.4
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.0
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.1
2,135,341	-		LRK54_RS09780	0.29	+0.2
2,135,458	-		LRK54_RS09780	0.38	-2.6
2,135,847	+		LRK54_RS09780	0.71	-1.6
2,135,848	-		LRK54_RS09780	0.71	-0.7
2,135,848	-		LRK54_RS09780	0.71	-0.3
2,135,848	-		LRK54_RS09780	0.71	-1.5
2,135,848	-		LRK54_RS09780	0.71	-1.1
2,135,917	-		LRK54_RS09780	0.77	-2.7
2,136,168	+				-0.5
2,136,168	+				-0.7
2,136,168	+				-1.3
2,136,168	+				-1.3
2,136,168	+				-1.5
2,136,168	+				-1.0
2,136,168	+				-2.1
2,136,168	+				-0.6
2,136,168	+				-0.4
2,136,168	+				-0.8
2,136,169	-				-1.8
2,136,169	-				-1.4
2,136,169	-				-0.4
2,136,169	-				+0.4
2,136,169	-				-1.6
2,136,169	-				-0.7
2,136,169	-				+2.2
2,136,169	-				-0.5
2,136,217	-				-0.6
2,136,239	+				-0.5
2,136,239	+				+1.8
2,136,239	+				-1.0
2,136,239	+				-0.6
2,136,239	+				+0.1
2,136,239	+				+0.6
2,136,239	+				-0.4
2,136,239	+				+0.2
2,136,239	+				+1.0
2,136,239	+				-0.7
2,136,239	+				-1.4
2,136,239	+				+0.1
2,136,239	+				+0.1
2,136,240	-				+0.1
2,136,240	-				+0.3
2,136,240	-				-0.6
2,136,240	-				+0.6
2,136,240	-				-0.4
2,136,240	-				+0.0
2,136,240	-				-1.3
2,136,240	-				-1.7
2,136,240	-				-0.6
2,136,240	-				-0.2
2,136,240	-				+0.2
2,136,240	-				-0.4
2,136,240	-				-1.3
2,136,296	+				+0.4
2,136,296	+				+2.1
2,136,296	+				-0.1
2,136,297	-				-1.9
2,136,297	-				+0.3
2,136,297	-				+2.4
2,136,367	+				+0.1
2,136,367	+				-0.4
2,136,367	+				+0.1
2,136,367	+				+0.4
2,136,368	-				-1.0
2,136,368	-				-0.4
2,136,368	-				+0.3
2,136,368	-				+0.9
2,136,368	-				+0.4
2,136,451	+		LRK54_RS09785	0.17	+0.1
2,136,452	-		LRK54_RS09785	0.18	-0.5
2,136,452	-		LRK54_RS09785	0.18	-0.1
2,136,452	-		LRK54_RS09785	0.18	+0.2
2,136,452	-		LRK54_RS09785	0.18	+0.9
2,136,452	-		LRK54_RS09785	0.18	+0.7
2,136,452	-		LRK54_RS09785	0.18	-1.0
2,136,832	+		LRK54_RS09785	0.71	-0.6
2,136,833	-		LRK54_RS09785	0.72	-0.7
2,136,925	+		LRK54_RS09785	0.85	+0.0
2,136,925	+		LRK54_RS09785	0.85	+1.4
2,136,925	+		LRK54_RS09785	0.85	-0.3
2,136,925	+		LRK54_RS09785	0.85	+2.4
2,136,925	+		LRK54_RS09785	0.85	-0.3
2,136,926	-		LRK54_RS09785	0.85	-0.7
2,136,926	-		LRK54_RS09785	0.85	+0.4
2,136,926	-		LRK54_RS09785	0.85	-0.9
2,136,955	+		LRK54_RS09785	0.89	+0.3
2,136,955	+		LRK54_RS09785	0.89	-0.3
2,136,955	+		LRK54_RS09785	0.89	-1.1
2,136,955	+		LRK54_RS09785	0.89	-0.6
2,136,955	+		LRK54_RS09785	0.89	+1.4
2,136,955	+		LRK54_RS09785	0.89	+0.3
2,136,955	+		LRK54_RS09785	0.89	+0.1
2,136,955	+		LRK54_RS09785	0.89	-1.8
2,136,955	+		LRK54_RS09785	0.89	-1.1
2,136,955	+		LRK54_RS09785	0.89	-0.9
2,136,956	-		LRK54_RS09785	0.89	+0.1
2,136,956	-		LRK54_RS09785	0.89	+0.1
2,136,956	-		LRK54_RS09785	0.89	-0.5
2,136,956	-		LRK54_RS09785	0.89	+0.1
2,136,956	-		LRK54_RS09785	0.89	+0.7
2,136,956	-		LRK54_RS09785	0.89	+0.6
2,136,956	-		LRK54_RS09785	0.89	+0.4
2,136,956	-		LRK54_RS09785	0.89	-0.2
2,136,956	-		LRK54_RS09785	0.89	-0.5
2,136,956	-		LRK54_RS09785	0.89	-0.3
2,136,956	-		LRK54_RS09785	0.89	+0.9
2,136,956	-		LRK54_RS09785	0.89	-0.6
2,136,956	-		LRK54_RS09785	0.89	-1.4
2,136,956	-		LRK54_RS09785	0.89	+0.4
2,136,956	-		LRK54_RS09785	0.89	-0.2
2,136,956	-		LRK54_RS09785	0.89	-1.1
2,137,095	+				+1.1
2,137,095	+				+0.6
2,137,095	+				+1.1
2,137,095	+				-0.7
2,137,095	+				-1.4
2,137,096	-				+1.4
2,137,096	-				+1.0
2,137,096	-				-0.9
2,137,096	-				-0.6
2,137,096	-				-1.5