Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09775

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
2,133,216	+		LRK54_RS09765	0.63	+0.4
2,133,216	+		LRK54_RS09765	0.63	+0.0
2,133,217	-		LRK54_RS09765	0.64	-0.1
2,133,230	+		LRK54_RS09765	0.66	-0.4
2,133,230	+		LRK54_RS09765	0.66	+0.5
2,133,231	-		LRK54_RS09765	0.66	-1.4
2,133,407	+				+0.1
2,133,407	+				-1.1
2,133,506	+				-1.6
2,133,506	+				-1.4
2,133,506	+				-0.2
2,133,506	+				-0.6
2,133,506	+				-0.6
2,133,506	+				-1.4
2,133,506	+				-1.6
2,133,506	+				-0.4
2,133,506	+				-2.7
2,133,506	+				-1.1
2,133,506	+				+0.4
2,133,506	+				-0.2
2,133,506	+				+0.2
2,133,506	+				-0.4
2,133,507	-				-0.3
2,133,507	-				-2.4
2,133,507	-				-1.9
2,133,507	-				-1.0
2,133,507	-				-1.6
2,133,507	-				-2.6
2,133,507	-				-0.6
2,133,507	-				+0.9
2,133,507	-				+0.6
2,133,507	-				+1.9
2,133,507	-				-0.0
2,133,507	-				-2.4
2,133,507	-				-1.3
2,133,507	-				-0.9
2,133,507	-				+1.0
2,133,507	-				-1.3
2,133,507	-				-0.6
2,133,507	-				+0.7
2,133,507	-				-1.8
2,133,527	+				-0.1
2,133,528	-				-0.9
2,133,528	-				-0.1
2,133,528	-				-1.0
2,133,528	-				-1.0
2,133,528	-				-0.6
2,133,528	-				+0.1
2,133,551	+		LRK54_RS09770	0.13	-1.2
2,133,551	+		LRK54_RS09770	0.13	+0.1
2,133,551	+		LRK54_RS09770	0.13	-0.1
2,133,551	+		LRK54_RS09770	0.13	+0.6
2,133,551	+		LRK54_RS09770	0.13	-1.5
2,133,551	+		LRK54_RS09770	0.13	-0.6
2,133,551	+		LRK54_RS09770	0.13	+0.4
2,133,551	+		LRK54_RS09770	0.13	-0.8
2,133,551	+		LRK54_RS09770	0.13	+1.6
2,133,551	+		LRK54_RS09770	0.13	-1.5
2,133,551	+		LRK54_RS09770	0.13	-1.2
2,133,551	+		LRK54_RS09770	0.13	-1.0
2,133,551	+		LRK54_RS09770	0.13	+0.3
2,133,551	+		LRK54_RS09770	0.13	-1.4
2,133,551	+		LRK54_RS09770	0.13	-1.3
2,133,551	+		LRK54_RS09770	0.13	-2.3
2,133,551	+		LRK54_RS09770	0.13	-1.0
2,133,551	+		LRK54_RS09770	0.13	-0.7
2,133,552	-		LRK54_RS09770	0.13	-2.1
2,133,552	-		LRK54_RS09770	0.13	-1.1
2,133,552	-		LRK54_RS09770	0.13	-0.6
2,133,552	-		LRK54_RS09770	0.13	-1.1
2,133,552	-		LRK54_RS09770	0.13	+0.9
2,133,552	-		LRK54_RS09770	0.13	+0.3
2,133,552	-		LRK54_RS09770	0.13	-1.9
2,133,552	-		LRK54_RS09770	0.13	-0.1
2,133,552	-		LRK54_RS09770	0.13	+0.9
2,133,552	-		LRK54_RS09770	0.13	-0.1
2,133,552	-		LRK54_RS09770	0.13	-2.4
2,133,552	-		LRK54_RS09770	0.13	-0.1
2,133,552	-		LRK54_RS09770	0.13	-1.3
2,133,552	-		LRK54_RS09770	0.13	-0.3
2,133,552	-		LRK54_RS09770	0.13	-2.6
2,133,552	-		LRK54_RS09770	0.13	+1.4
2,133,552	-		LRK54_RS09770	0.13	+0.4
2,133,552	-		LRK54_RS09770	0.13	-1.6
2,133,968	+		LRK54_RS09770	0.68	-0.6
2,133,968	+		LRK54_RS09770	0.68	-2.5
2,133,968	+		LRK54_RS09770	0.68	-0.3
2,133,968	+		LRK54_RS09770	0.68	-1.4
2,133,968	+		LRK54_RS09770	0.68	+0.6
2,133,969	-		LRK54_RS09770	0.68	+0.3
2,133,969	-		LRK54_RS09770	0.68	-1.0
2,133,969	-		LRK54_RS09770	0.68	-1.1
2,134,247	+				-0.1
2,134,247	+				+1.1
2,134,248	-				-0.2
2,134,512	+		LRK54_RS09775	0.38	-0.4
2,134,512	+		LRK54_RS09775	0.38	+0.4
2,134,512	+		LRK54_RS09775	0.38	-0.1
2,134,512	+		LRK54_RS09775	0.38	-3.5
2,134,512	+		LRK54_RS09775	0.38	-1.3
2,134,512	+		LRK54_RS09775	0.38	-1.5
2,134,512	+		LRK54_RS09775	0.38	-2.1
2,134,512	+		LRK54_RS09775	0.38	-1.8
2,134,512	+		LRK54_RS09775	0.38	+0.9
2,134,512	+		LRK54_RS09775	0.38	-0.6
2,134,512	+				+1.4
2,134,512	+		LRK54_RS09775	0.38	-1.8
2,134,512	+		LRK54_RS09775	0.38	-0.3
2,134,512	+		LRK54_RS09775	0.38	-0.7
2,134,512	+		LRK54_RS09775	0.38	+0.7
2,134,512	+		LRK54_RS09775	0.38	-0.2
2,134,512	+		LRK54_RS09775	0.38	+0.2
2,134,513	-		LRK54_RS09775	0.38	-0.7
2,134,513	-		LRK54_RS09775	0.38	-1.3
2,134,513	-		LRK54_RS09775	0.38	-1.2
2,134,513	-		LRK54_RS09775	0.38	-2.0
2,134,513	-		LRK54_RS09775	0.38	-1.4
2,134,513	-		LRK54_RS09775	0.38	-2.2
2,134,513	-		LRK54_RS09775	0.38	-0.5
2,134,513	-		LRK54_RS09775	0.38	-1.0
2,134,513	-		LRK54_RS09775	0.38	-1.6
2,134,513	-		LRK54_RS09775	0.38	-1.6
2,134,513	-		LRK54_RS09775	0.38	-1.3
2,134,513	-		LRK54_RS09775	0.38	-0.6
2,134,513	-		LRK54_RS09775	0.38	+0.2
2,134,513	-		LRK54_RS09775	0.38	-0.7
2,134,723	+		LRK54_RS09775	0.65	-1.6
2,134,723	+		LRK54_RS09775	0.65	+0.4
2,134,723	+		LRK54_RS09775	0.65	-1.1
2,134,723	+		LRK54_RS09775	0.65	-1.0
2,134,723	+		LRK54_RS09775	0.65	-0.7
2,134,723	+		LRK54_RS09775	0.65	-1.3
2,134,723	+		LRK54_RS09775	0.65	-2.2
2,134,723	+		LRK54_RS09775	0.65	-0.4
2,134,723	+		LRK54_RS09775	0.65	+2.0
2,134,723	+		LRK54_RS09775	0.65	-0.6
2,134,723	+		LRK54_RS09775	0.65	-1.4
2,134,723	+		LRK54_RS09775	0.65	-1.7
2,134,723	+		LRK54_RS09775	0.65	+0.7
2,134,723	+		LRK54_RS09775	0.65	-2.6
2,134,723	+		LRK54_RS09775	0.65	-0.6
2,134,723	+		LRK54_RS09775	0.65	-1.1
2,134,723	+		LRK54_RS09775	0.65	-3.4
2,134,723	+		LRK54_RS09775	0.65	-0.7
2,134,723	+		LRK54_RS09775	0.65	-0.8
2,134,723	+		LRK54_RS09775	0.65	-1.4
2,134,723	+		LRK54_RS09775	0.65	-2.5
2,134,723	+		LRK54_RS09775	0.65	-0.1
2,134,723	+		LRK54_RS09775	0.65	-1.3
2,134,723	+		LRK54_RS09775	0.65	-1.8
2,134,723	+		LRK54_RS09775	0.65	-1.4
2,134,723	+		LRK54_RS09775	0.65	-0.7
2,134,723	+		LRK54_RS09775	0.65	-0.6
2,134,723	+		LRK54_RS09775	0.65	-1.0
2,134,723	+		LRK54_RS09775	0.65	+0.9
2,134,723	+		LRK54_RS09775	0.65	-1.6
2,134,723	+		LRK54_RS09775	0.65	-0.6
2,134,723	+		LRK54_RS09775	0.65	-0.1
2,134,724	-		LRK54_RS09775	0.65	-2.4
2,134,724	-		LRK54_RS09775	0.65	-0.7
2,134,724	-		LRK54_RS09775	0.65	-0.6
2,134,724	-		LRK54_RS09775	0.65	-1.2
2,134,724	-		LRK54_RS09775	0.65	+0.1
2,134,724	-		LRK54_RS09775	0.65	-2.4
2,134,724	-		LRK54_RS09775	0.65	-1.1
2,134,724	-		LRK54_RS09775	0.65	-2.4
2,134,724	-		LRK54_RS09775	0.65	-2.2
2,134,724	-		LRK54_RS09775	0.65	-1.3
2,134,724	-		LRK54_RS09775	0.65	-2.8
2,134,724	-		LRK54_RS09775	0.65	-0.9
2,134,724	-		LRK54_RS09775	0.65	-0.3
2,134,724	-		LRK54_RS09775	0.65	+1.4
2,134,724	-		LRK54_RS09775	0.65	-1.0
2,134,724	-		LRK54_RS09775	0.65	-0.1
2,134,724	-		LRK54_RS09775	0.65	-0.4
2,134,724	-		LRK54_RS09775	0.65	-1.7
2,134,724	-		LRK54_RS09775	0.65	-1.0
2,134,724	-		LRK54_RS09775	0.65	-0.6
2,134,724	-		LRK54_RS09775	0.65	-1.5
2,134,724	-		LRK54_RS09775	0.65	-1.1
2,134,724	-		LRK54_RS09775	0.65	-0.1
2,134,724	-		LRK54_RS09775	0.65	-1.5
2,134,724	-		LRK54_RS09775	0.65	-2.5
2,134,724	-		LRK54_RS09775	0.65	-0.9
2,134,724	-		LRK54_RS09775	0.65	-0.6
2,134,724	-		LRK54_RS09775	0.65	-0.9
2,134,724	-		LRK54_RS09775	0.65	-1.6
2,134,724	-		LRK54_RS09775	0.65	-1.6
2,135,235	+		LRK54_RS09780	0.20	-0.6
2,135,235	+		LRK54_RS09780	0.20	-0.3
2,135,235	+		LRK54_RS09780	0.20	-2.6
2,135,235	+		LRK54_RS09780	0.20	-1.1
2,135,235	+		LRK54_RS09780	0.20	+0.9
2,135,235	+		LRK54_RS09780	0.20	+1.4
2,135,235	+		LRK54_RS09780	0.20	-0.9
2,135,235	+		LRK54_RS09780	0.20	-1.4
2,135,236	-		LRK54_RS09780	0.20	+0.6
2,135,236	-		LRK54_RS09780	0.20	-0.6
2,135,236	-		LRK54_RS09780	0.20	+2.1
2,135,236	-		LRK54_RS09780	0.20	-1.4
2,135,236	-		LRK54_RS09780	0.20	-1.8
2,135,236	-		LRK54_RS09780	0.20	-2.2
2,135,236	-		LRK54_RS09780	0.20	-2.2
2,135,236	-		LRK54_RS09780	0.20	-0.9
2,135,340	+		LRK54_RS09780	0.28	-0.9
2,135,340	+		LRK54_RS09780	0.28	-0.3
2,135,340	+		LRK54_RS09780	0.28	+0.3
2,135,340	+		LRK54_RS09780	0.28	-0.7
2,135,340	+		LRK54_RS09780	0.28	-1.2
2,135,340	+		LRK54_RS09780	0.28	-3.5
2,135,340	+		LRK54_RS09780	0.28	-1.3
2,135,340	+		LRK54_RS09780	0.28	-1.4
2,135,340	+		LRK54_RS09780	0.28	+0.6
2,135,340	+		LRK54_RS09780	0.28	-0.1
2,135,340	+		LRK54_RS09780	0.28	-2.0
2,135,340	+		LRK54_RS09780	0.28	-1.1
2,135,340	+		LRK54_RS09780	0.28	-3.8
2,135,340	+		LRK54_RS09780	0.28	+0.1
2,135,340	+		LRK54_RS09780	0.28	+0.4
2,135,340	+		LRK54_RS09780	0.28	+0.9
2,135,340	+		LRK54_RS09780	0.28	+3.0
2,135,340	+		LRK54_RS09780	0.28	-1.4
2,135,340	+		LRK54_RS09780	0.28	-1.4
2,135,340	+		LRK54_RS09780	0.28	+0.1
2,135,340	+		LRK54_RS09780	0.28	-1.2
2,135,340	+		LRK54_RS09780	0.28	+0.1
2,135,340	+		LRK54_RS09780	0.28	+0.9
2,135,340	+		LRK54_RS09780	0.28	-0.9
2,135,340	+		LRK54_RS09780	0.28	-0.6
2,135,340	+		LRK54_RS09780	0.28	-1.7
2,135,340	+		LRK54_RS09780	0.28	+0.9
2,135,340	+		LRK54_RS09780	0.28	-2.1
2,135,340	+		LRK54_RS09780	0.28	-1.2
2,135,340	+		LRK54_RS09780	0.28	-0.6
2,135,340	+		LRK54_RS09780	0.28	-0.1
2,135,340	+		LRK54_RS09780	0.28	-1.0
2,135,340	+		LRK54_RS09780	0.28	-1.5
2,135,340	+		LRK54_RS09780	0.28	-0.1
2,135,340	+		LRK54_RS09780	0.28	-1.8
2,135,340	+		LRK54_RS09780	0.28	-0.6
2,135,340	+		LRK54_RS09780	0.28	+0.3
2,135,340	+		LRK54_RS09780	0.28	-0.7
2,135,341	-		LRK54_RS09780	0.29	-0.8
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.0
2,135,341	-		LRK54_RS09780	0.29	-1.3
2,135,341	-		LRK54_RS09780	0.29	-1.4
2,135,341	-		LRK54_RS09780	0.29	+0.9
2,135,341	-		LRK54_RS09780	0.29	-3.6
2,135,341	-		LRK54_RS09780	0.29	-1.0
2,135,341	-		LRK54_RS09780	0.29	+0.4
2,135,341	-		LRK54_RS09780	0.29	-0.7
2,135,341	-		LRK54_RS09780	0.29	-0.9
2,135,341	-		LRK54_RS09780	0.29	-1.1
2,135,341	-		LRK54_RS09780	0.29	-1.6
2,135,341	-		LRK54_RS09780	0.29	-0.9
2,135,341	-		LRK54_RS09780	0.29	-2.7
2,135,341	-		LRK54_RS09780	0.29	-2.6
2,135,341	-		LRK54_RS09780	0.29	-0.8
2,135,341	-		LRK54_RS09780	0.29	-1.2
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.4
2,135,341	-		LRK54_RS09780	0.29	+0.7
2,135,341	-		LRK54_RS09780	0.29	-1.2
2,135,341	-		LRK54_RS09780	0.29	-2.4
2,135,341	-		LRK54_RS09780	0.29	-1.8
2,135,341	-		LRK54_RS09780	0.29	-1.3
2,135,341	-		LRK54_RS09780	0.29	-0.4
2,135,341	-		LRK54_RS09780	0.29	-0.6
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.9
2,135,341	-		LRK54_RS09780	0.29	-1.4
2,135,341	-		LRK54_RS09780	0.29	-0.4
2,135,341	-		LRK54_RS09780	0.29	-0.4
2,135,341	-		LRK54_RS09780	0.29	+0.9
2,135,341	-		LRK54_RS09780	0.29	-2.4
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.0
2,135,341	-		LRK54_RS09780	0.29	-2.0
2,135,341	-		LRK54_RS09780	0.29	-1.1
2,135,341	-		LRK54_RS09780	0.29	+0.2
2,135,458	-		LRK54_RS09780	0.38	-2.6
2,135,847	+		LRK54_RS09780	0.71	-1.6
2,135,848	-		LRK54_RS09780	0.71	-0.7
2,135,848	-		LRK54_RS09780	0.71	-0.3
2,135,848	-		LRK54_RS09780	0.71	-1.5
2,135,848	-		LRK54_RS09780	0.71	-1.1
2,135,917	-		LRK54_RS09780	0.77	-2.7