Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08775

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
1,911,147	+		LRK54_RS08770	0.53	+1.6
1,911,147	+		LRK54_RS08770	0.53	-0.1
1,911,148	-		LRK54_RS08770	0.53	-0.5
1,911,148	-		LRK54_RS08770	0.53	-1.1
1,911,210	+		LRK54_RS08770	0.57	-0.3
1,911,211	-		LRK54_RS08770	0.57	-0.5
1,911,211	-		LRK54_RS08770	0.57	-0.4
1,911,258	+		LRK54_RS08770	0.61	-0.5
1,911,258	+		LRK54_RS08770	0.61	-0.7
1,911,258	+		LRK54_RS08770	0.61	-0.6
1,911,258	+		LRK54_RS08770	0.61	+1.2
1,911,258	+		LRK54_RS08770	0.61	+2.1
1,911,258	+		LRK54_RS08770	0.61	+0.3
1,911,258	+		LRK54_RS08770	0.61	+0.8
1,911,258	+		LRK54_RS08770	0.61	+0.6
1,911,258	+		LRK54_RS08770	0.61	+1.5
1,911,258	+		LRK54_RS08770	0.61	-1.3
1,911,258	+		LRK54_RS08770	0.61	+0.3
1,911,258	+		LRK54_RS08770	0.61	+0.7
1,911,258	+		LRK54_RS08770	0.61	-0.1
1,911,258	+		LRK54_RS08770	0.61	-0.3
1,911,259	-		LRK54_RS08770	0.61	-0.4
1,911,259	-		LRK54_RS08770	0.61	-0.3
1,911,259	-		LRK54_RS08770	0.61	-0.5
1,911,259	-		LRK54_RS08770	0.61	+1.2
1,911,259	-		LRK54_RS08770	0.61	-0.2
1,911,259	-		LRK54_RS08770	0.61	+0.6
1,911,259	-		LRK54_RS08770	0.61	+0.4
1,911,259	-		LRK54_RS08770	0.61	+0.8
1,911,259	-		LRK54_RS08770	0.61	+0.4
1,911,259	-		LRK54_RS08770	0.61	+0.3
1,911,259	-		LRK54_RS08770	0.61	+0.8
1,911,259	-		LRK54_RS08770	0.61	-0.2
1,911,259	-		LRK54_RS08770	0.61	-1.2
1,911,291	+		LRK54_RS08770	0.63	-1.3
1,911,291	+		LRK54_RS08770	0.63	+0.0
1,911,291	+		LRK54_RS08770	0.63	-1.0
1,911,291	+		LRK54_RS08770	0.63	-1.1
1,911,291	+		LRK54_RS08770	0.63	-1.8
1,911,291	+		LRK54_RS08770	0.63	+1.3
1,911,292	-		LRK54_RS08770	0.63	-0.1
1,911,292	-		LRK54_RS08770	0.63	-0.3
1,911,292	-		LRK54_RS08770	0.63	+0.1
1,911,292	-		LRK54_RS08770	0.63	-1.1
1,911,292	-		LRK54_RS08770	0.63	-0.3
1,911,292	-		LRK54_RS08770	0.63	-0.0
1,911,292	-		LRK54_RS08770	0.63	+0.0
1,911,292	-		LRK54_RS08770	0.63	-0.2
1,911,292	-		LRK54_RS08770	0.63	-0.3
1,911,474	+		LRK54_RS08770	0.76	+0.9
1,911,474	+		LRK54_RS08770	0.76	-0.6
1,911,474	+		LRK54_RS08770	0.76	-1.5
1,911,474	+		LRK54_RS08770	0.76	+0.2
1,911,474	+		LRK54_RS08770	0.76	+0.2
1,911,474	+		LRK54_RS08770	0.76	-0.3
1,911,474	+		LRK54_RS08770	0.76	-0.1
1,911,475	-		LRK54_RS08770	0.76	-1.6
1,911,475	-		LRK54_RS08770	0.76	-1.4
1,911,475	-		LRK54_RS08770	0.76	+0.0
1,911,540	+		LRK54_RS08770	0.81	-0.0
1,911,540	+		LRK54_RS08770	0.81	+0.9
1,911,540	+		LRK54_RS08770	0.81	-0.9
1,911,540	+		LRK54_RS08770	0.81	+0.0
1,911,540	+		LRK54_RS08770	0.81	+0.1
1,911,540	+		LRK54_RS08770	0.81	+0.3
1,911,540	+		LRK54_RS08770	0.81	+1.2
1,911,541	-		LRK54_RS08770	0.81	-0.2
1,911,541	-		LRK54_RS08770	0.81	+1.0
1,911,541	-		LRK54_RS08770	0.81	-1.2
1,911,541	-		LRK54_RS08770	0.81	-0.5
1,911,555	+		LRK54_RS08770	0.82	-0.1
1,911,555	+		LRK54_RS08770	0.82	+0.1
1,911,555	+		LRK54_RS08770	0.82	-1.6
1,911,555	+		LRK54_RS08770	0.82	+0.4
1,911,555	+		LRK54_RS08770	0.82	-0.0
1,911,555	+		LRK54_RS08770	0.82	-2.3
1,911,555	+		LRK54_RS08770	0.82	-1.2
1,911,555	+		LRK54_RS08770	0.82	+0.8
1,911,555	+		LRK54_RS08770	0.82	+0.1
1,911,555	+		LRK54_RS08770	0.82	-0.5
1,911,555	+		LRK54_RS08770	0.82	-0.3
1,911,555	+		LRK54_RS08770	0.82	+0.1
1,911,555	+		LRK54_RS08770	0.82	+1.5
1,911,555	+		LRK54_RS08770	0.82	+0.7
1,911,555	+		LRK54_RS08770	0.82	-0.1
1,911,555	+		LRK54_RS08770	0.82	-0.7
1,911,555	+		LRK54_RS08770	0.82	-0.1
1,911,555	+		LRK54_RS08770	0.82	-0.2
1,911,555	+		LRK54_RS08770	0.82	-0.3
1,911,555	+		LRK54_RS08770	0.82	-0.4
1,911,556	-		LRK54_RS08770	0.82	-1.1
1,911,556	-		LRK54_RS08770	0.82	-1.4
1,911,556	-		LRK54_RS08770	0.82	-0.3
1,911,556	-		LRK54_RS08770	0.82	+0.5
1,911,556	-		LRK54_RS08770	0.82	+0.4
1,911,556	-		LRK54_RS08770	0.82	-0.2
1,911,556	-		LRK54_RS08770	0.82	-0.1
1,911,556	-		LRK54_RS08770	0.82	+0.5
1,911,556	-		LRK54_RS08770	0.82	+0.1
1,911,556	-		LRK54_RS08770	0.82	-0.8
1,911,557	-		LRK54_RS08770	0.82	-0.6
1,911,560	+		LRK54_RS08770	0.82	+0.2
1,911,560	+		LRK54_RS08770	0.82	+0.3
1,911,560	+		LRK54_RS08770	0.82	-0.5
1,911,560	+		LRK54_RS08770	0.82	-0.7
1,911,560	+		LRK54_RS08770	0.82	-0.7
1,911,560	+		LRK54_RS08770	0.82	-0.0
1,911,560	+		LRK54_RS08770	0.82	+1.1
1,911,560	+		LRK54_RS08770	0.82	-0.7
1,911,560	+		LRK54_RS08770	0.82	+0.9
1,911,560	+		LRK54_RS08770	0.82	+3.0
1,911,560	+		LRK54_RS08770	0.82	-1.1
1,911,560	+		LRK54_RS08770	0.82	+2.5
1,911,561	-		LRK54_RS08770	0.82	+0.7
1,911,561	-		LRK54_RS08770	0.82	-0.6
1,911,561	-		LRK54_RS08770	0.82	-0.0
1,911,561	-		LRK54_RS08770	0.82	-1.2
1,911,561	-		LRK54_RS08770	0.82	-0.3
1,911,561	-		LRK54_RS08770	0.82	+0.2
1,911,561	-		LRK54_RS08770	0.82	-1.6
1,911,561	-		LRK54_RS08770	0.82	-1.5
1,911,561	-		LRK54_RS08770	0.82	-2.7
1,911,561	-		LRK54_RS08770	0.82	+0.5
1,911,561	-		LRK54_RS08770	0.82	-0.2
1,911,561	-		LRK54_RS08770	0.82	+0.4
1,911,561	-		LRK54_RS08770	0.82	+0.7
1,911,561	-		LRK54_RS08770	0.82	+0.5
1,911,561	-		LRK54_RS08770	0.82	+0.5
1,911,561	-		LRK54_RS08770	0.82	-1.2
1,911,561	-		LRK54_RS08770	0.82	-0.4
1,911,561	-		LRK54_RS08770	0.82	+1.5
1,911,561	-		LRK54_RS08770	0.82	+1.5
1,911,753	+				+1.5
1,911,753	+				+0.5
1,911,753	+				-0.6
1,911,753	+				+0.8
1,911,753	+				-0.0
1,911,753	+				-1.7
1,911,753	+				-0.3
1,911,753	+				+0.7
1,911,753	+				-0.8
1,911,753	+				+0.5
1,911,753	+				+0.2
1,911,754	-				-0.1
1,911,754	-				+0.4
1,911,754	-				+0.2
1,911,754	-				+0.2
1,911,754	-				-0.6
1,911,754	-				+0.0
1,911,754	-				-1.1
1,911,881	+				+0.2
1,911,882	-				-0.7
1,911,945	+				+0.2
1,911,945	+				-0.0
1,911,945	+				-1.5
1,911,945	+				+0.9
1,911,945	+				-0.0
1,911,945	+				+0.4
1,911,946	-				-0.1
1,911,946	-				+0.5
1,911,946	-				+0.1
1,911,946	-				-2.4
1,911,946	-				-1.7
1,911,946	-				+1.1
1,911,946	-				-1.0
1,911,957	+				+0.6
1,911,957	+				-1.8
1,911,957	+				+0.2
1,911,957	+				+0.1
1,911,957	+				+0.3
1,911,957	+				-2.1
1,911,957	+				+0.3
1,911,957	+				+1.3
1,911,957	+				+0.2
1,911,957	+				-0.3
1,911,957	+				+0.2
1,911,957	+				-0.6
1,911,957	+				+0.4
1,911,957	+				-0.3
1,911,957	+				+0.6
1,911,957	+				-1.1
1,911,957	+				+0.5
1,911,957	+				+0.1
1,911,957	+				-0.1
1,911,958	-				-0.1
1,911,958	-				-0.7
1,911,958	-				+0.7
1,911,958	-				+0.4
1,911,958	-				-0.6
1,911,958	-				-1.5
1,911,958	-				-2.0
1,911,958	-				-1.1
1,911,958	-				-0.5
1,911,958	-				-0.7
1,911,958	-				-0.4
1,911,958	-				-0.7
1,911,958	-				+0.9
1,911,958	-				+0.5
1,911,958	-				-0.8
1,911,958	-				-2.2
1,911,958	-				+0.7
1,911,958	-				+2.0
1,911,986	+				+0.0
1,911,986	+				-0.3
1,911,986	+				+1.1
1,911,986	+				+1.5
1,911,987	-				-1.0
1,911,987	-				-0.1
1,912,037	+				-1.0
1,912,037	+				-1.7
1,912,037	+				+0.5
1,912,037	+				-0.3
1,912,037	+				-0.3
1,912,037	+				-1.6
1,912,037	+				-0.2
1,912,037	+				-0.1
1,912,037	+				+0.2
1,912,037	+				-0.5
1,912,037	+				-0.1
1,912,038	-				+0.0
1,912,038	-				-1.2
1,912,038	-				-0.8
1,912,038	-				+0.6
1,912,038	-				-0.4
1,912,038	-				-0.3
1,912,038	-				+1.1
1,912,038	-				-0.5
1,912,259	+		LRK54_RS08775	0.68	-1.8
1,912,259	+		LRK54_RS08775	0.68	-0.5
1,912,418	+				+0.0
1,912,418	+				-1.3
1,912,418	+				+0.6
1,912,418	+				+0.2
1,912,418	+				+1.5
1,912,419	-				-0.8
1,912,419	-				-1.3
1,912,419	-				-2.0
1,912,419	-				+1.4
1,912,419	-				+0.5
1,912,419	-				-0.6
1,912,419	-				-0.4
1,912,419	-				+0.2
1,912,444	+				+1.1
1,912,444	+				-0.4
1,912,444	+				+0.2
1,912,444	+				-1.8
1,912,444	+				-0.4
1,912,444	+				-0.2
1,912,444	+				+1.5
1,912,444	+				+1.8
1,912,444	+				+1.5
1,912,445	-				+0.4
1,912,445	-				-0.0
1,912,445	-				-0.4
1,912,445	-				+0.5
1,912,445	-				+0.2
1,912,445	-				-0.1
1,912,445	-				+2.0
1,912,445	-				-0.9
1,912,445	-				-0.7
1,912,445	-				-1.8
1,912,481	-				-0.9
1,912,481	-				-1.1
1,912,543	+				+0.4
1,912,543	+				-1.7
1,912,543	+				-0.1
1,912,543	+				+0.2
1,912,543	+				+0.2
1,912,543	+				+1.9
1,912,543	+				-0.0
1,912,543	+				+0.2
1,912,543	+				-1.7
1,912,543	+				+0.5
1,912,543	+				+1.1
1,912,543	+				-1.0
1,912,543	+				-0.2
1,912,543	+				-0.1
1,912,543	+				+1.8
1,912,543	+				-1.4
1,912,543	+				-0.5
1,912,543	+				+0.7
1,912,543	+				+1.3
1,912,543	+				+0.3
1,912,543	+				-0.6
1,912,543	+				-0.0
1,912,543	+				-0.5
1,912,544	-				-0.1
1,912,544	-				-1.3
1,912,544	-				+0.2
1,912,544	-				-0.5
1,912,544	-				+0.2
1,912,544	-				+0.3
1,912,544	-				+2.3
1,912,544	-				-1.1
1,912,544	-				-0.0
1,912,544	-				+0.6
1,912,544	-				-1.6
1,912,544	-				+0.4
1,912,544	-				-0.8
1,912,544	-				+0.4
1,912,544	-				+0.3
1,912,544	-				-1.2
1,912,544	-				+0.8
1,912,544	-				+0.2
1,912,544	-				-1.2
1,912,544	-				+0.2
1,912,544	-				-0.1
1,912,544	-				+0.4
1,912,544	-				+0.5
1,912,544	-				+0.4
1,912,544	-				+0.1
1,912,659	+		LRK54_RS08780	0.17	+0.3
1,912,708	+		LRK54_RS08780	0.30	+0.0
1,912,708	+		LRK54_RS08780	0.30	+0.0
1,912,708	+		LRK54_RS08780	0.30	-0.1
1,912,709	-		LRK54_RS08780	0.30	-0.2
1,912,709	-		LRK54_RS08780	0.30	-0.7
1,912,709	-		LRK54_RS08780	0.30	-0.5
1,912,709	-		LRK54_RS08780	0.30	-0.2
1,912,709	-		LRK54_RS08780	0.30	-0.3
1,912,743	+		LRK54_RS08780	0.39	-0.1
1,912,743	+		LRK54_RS08780	0.39	-2.0
1,912,744	-		LRK54_RS08780	0.39	+2.1
1,912,744	-		LRK54_RS08780	0.39	+0.3
1,912,794	+		LRK54_RS08780	0.52	-2.1
1,912,794	+		LRK54_RS08780	0.52	-0.9
1,912,794	+		LRK54_RS08780	0.52	-0.0
1,912,794	+		LRK54_RS08780	0.52	-0.8
1,912,794	+		LRK54_RS08780	0.52	+0.3
1,912,794	+		LRK54_RS08780	0.52	+0.1
1,912,794	+		LRK54_RS08780	0.52	+1.1
1,912,794	+		LRK54_RS08780	0.52	-0.1
1,912,794	+		LRK54_RS08780	0.52	+0.0
1,912,794	+		LRK54_RS08780	0.52	-0.2
1,912,794	+		LRK54_RS08780	0.52	+0.2
1,912,794	+		LRK54_RS08780	0.52	-1.2
1,912,794	+		LRK54_RS08780	0.52	+0.0
1,912,794	+		LRK54_RS08780	0.52	+1.0
1,912,794	+		LRK54_RS08780	0.52	-0.2
1,912,794	+		LRK54_RS08780	0.52	-0.8
1,912,794	+		LRK54_RS08780	0.52	-1.3
1,912,794	+		LRK54_RS08780	0.52	-0.3
1,912,794	+		LRK54_RS08780	0.52	-0.4
1,912,795	-		LRK54_RS08780	0.52	-0.4
1,912,795	-		LRK54_RS08780	0.52	-0.6
1,912,795	-		LRK54_RS08780	0.52	-1.1
1,912,795	-		LRK54_RS08780	0.52	-0.0
1,912,795	-		LRK54_RS08780	0.52	+0.5
1,912,795	-		LRK54_RS08780	0.52	-0.3
1,912,795	-		LRK54_RS08780	0.52	-0.5
1,912,795	-		LRK54_RS08780	0.52	+1.0
1,912,795	-		LRK54_RS08780	0.52	-0.9
1,912,795	-		LRK54_RS08780	0.52	-0.0
1,912,795	-		LRK54_RS08780	0.52	-0.0
1,912,795	-		LRK54_RS08780	0.52	+0.9
1,912,795	-		LRK54_RS08780	0.52	-0.3
1,912,795	-		LRK54_RS08780	0.52	-1.2
1,912,795	-		LRK54_RS08780	0.52	+1.0
1,912,795	-		LRK54_RS08780	0.52	-0.5
1,912,795	-		LRK54_RS08780	0.52	-0.3
1,912,795	-		LRK54_RS08780	0.52	-0.0
1,913,086	+				-0.9
1,913,086	+				-0.1
1,913,086	+				-0.1
1,913,086	+				-0.2
1,913,086	+				+0.3
1,913,087	-				+0.5
1,913,087	-				+2.5
1,913,087	-				+0.4
1,913,087	-				-0.0
1,913,087	-				-0.0
1,913,087	-				-0.9
1,913,087	-				-0.8
1,913,129	+				+0.9
1,913,130	-				+0.2
1,913,180	+				-0.5
1,913,180	+				-0.5
1,913,180	+				-1.2
1,913,180	+				+0.1
1,913,180	+				+0.1
1,913,180	+				+0.8
1,913,180	+				-0.8
1,913,180	+				-0.3
1,913,180	+				-0.6
1,913,180	+				+0.0
1,913,180	+				-1.3
1,913,180	+				+1.5
1,913,180	+				+0.8
1,913,180	+				+1.5
1,913,180	+				-1.9
1,913,180	+				-0.1
1,913,180	+				+1.5
1,913,180	+				+1.9
1,913,180	+				-0.5
1,913,181	-				-0.3
1,913,181	-				-0.0
1,913,181	-				-2.5
1,913,181	-				+1.5
1,913,181	-				-0.7
1,913,181	-				+0.2
1,913,181	-				-0.5
1,913,181	-				-0.9
1,913,181	-				-1.6
1,913,181	-				-0.6
1,913,181	-				-0.1
1,913,181	-				+0.6
1,913,181	-				+1.5
1,913,181	-				-2.0
1,913,181	-				+1.1
1,913,195	-				+0.2
1,913,326	-				+0.1
1,913,326	-				+0.3
1,913,326	-				-0.2
1,913,326	-				-1.2
1,913,369	+				-0.4
1,913,369	+				+0.2
1,913,369	+				+0.4
1,913,369	+				-0.5
1,913,369	+				-2.0
1,913,369	+				-2.3
1,913,369	+				+0.3
1,913,370	-				+0.2
1,913,370	-				-0.3
1,913,370	-				-0.7
1,913,370	-				-0.3
1,913,370	-				-0.3
1,913,370	-				+0.2
1,913,370	-				+1.0