Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07075

Experiment: R2A with nitrate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 250 mM
1,513,787	+				-0.6
1,513,787	+				+1.1
1,513,788	-				+0.5
1,513,877	+				-0.0
1,513,877	+				+1.1
1,513,877	+				+0.0
1,513,877	+				-0.0
1,513,877	+				+0.2
1,513,877	+				-1.4
1,513,877	+				-0.4
1,513,877	+				-0.3
1,513,877	+				-0.3
1,513,877	+				-0.1
1,513,877	+				-0.9
1,513,877	+				+0.1
1,513,877	+				-1.1
1,513,877	+				+0.3
1,513,878	-				-0.6
1,513,878	-				+1.1
1,513,878	-				+1.6
1,513,878	-				+0.4
1,513,878	-				+1.1
1,513,878	-				+0.7
1,513,878	-				-0.7
1,513,878	-				+0.2
1,513,878	-				+0.9
1,514,003	+		LRK54_RS07070	0.22	+1.9
1,514,003	+		LRK54_RS07070	0.22	-0.3
1,514,003	+		LRK54_RS07070	0.22	+0.9
1,514,003	+		LRK54_RS07070	0.22	-0.2
1,514,003	+		LRK54_RS07070	0.22	-0.3
1,514,003	+		LRK54_RS07070	0.22	+1.6
1,514,003	+		LRK54_RS07070	0.22	+1.0
1,514,003	+		LRK54_RS07070	0.22	+0.5
1,514,003	+		LRK54_RS07070	0.22	-1.4
1,514,003	+		LRK54_RS07070	0.22	+0.1
1,514,003	+		LRK54_RS07070	0.22	-0.2
1,514,003	+		LRK54_RS07070	0.22	-0.4
1,514,003	+		LRK54_RS07070	0.22	-1.1
1,514,003	+		LRK54_RS07070	0.22	-0.2
1,514,003	+		LRK54_RS07070	0.22	+0.9
1,514,003	+		LRK54_RS07070	0.22	+1.0
1,514,004	-		LRK54_RS07070	0.22	+0.9
1,514,004	-		LRK54_RS07070	0.22	+0.1
1,514,004	-		LRK54_RS07070	0.22	-0.1
1,514,004	-		LRK54_RS07070	0.22	+1.8
1,514,004	-		LRK54_RS07070	0.22	+0.8
1,514,004	-		LRK54_RS07070	0.22	-0.3
1,514,004	-		LRK54_RS07070	0.22	+0.0
1,514,004	-		LRK54_RS07070	0.22	+0.5
1,514,004	-		LRK54_RS07070	0.22	-1.5
1,514,004	-		LRK54_RS07070	0.22	+0.5
1,514,004	-		LRK54_RS07070	0.22	+0.4
1,514,004	-		LRK54_RS07070	0.22	-0.4
1,514,004	-		LRK54_RS07070	0.22	+1.5
1,514,004	-		LRK54_RS07070	0.22	+1.0
1,514,004	-		LRK54_RS07070	0.22	-0.1
1,514,042	+		LRK54_RS07070	0.28	+0.2
1,514,042	+		LRK54_RS07070	0.28	-0.2
1,514,042	+		LRK54_RS07070	0.28	-1.2
1,514,042	+		LRK54_RS07070	0.28	-0.7
1,514,042	+		LRK54_RS07070	0.28	-0.3
1,514,042	+		LRK54_RS07070	0.28	+0.5
1,514,042	+		LRK54_RS07070	0.28	+0.1
1,514,042	+		LRK54_RS07070	0.28	+2.1
1,514,042	+		LRK54_RS07070	0.28	-0.3
1,514,042	+		LRK54_RS07070	0.28	+1.3
1,514,042	+		LRK54_RS07070	0.28	+0.9
1,514,043	-		LRK54_RS07070	0.28	-0.1
1,514,043	-		LRK54_RS07070	0.28	+2.7
1,514,043	-		LRK54_RS07070	0.28	+0.3
1,514,318	+		LRK54_RS07070	0.70	+0.1
1,514,318	+		LRK54_RS07070	0.70	-1.6
1,514,318	+		LRK54_RS07070	0.70	+1.9
1,514,318	+		LRK54_RS07070	0.70	-0.3
1,514,318	+		LRK54_RS07070	0.70	-0.3
1,514,318	+		LRK54_RS07070	0.70	-1.8
1,514,318	+		LRK54_RS07070	0.70	-0.3
1,514,318	+		LRK54_RS07070	0.70	+1.1
1,514,318	+		LRK54_RS07070	0.70	+0.7
1,514,318	+		LRK54_RS07070	0.70	-1.5
1,514,318	+		LRK54_RS07070	0.70	-0.8
1,514,318	+		LRK54_RS07070	0.70	-0.9
1,514,318	+		LRK54_RS07070	0.70	-0.1
1,514,318	+		LRK54_RS07070	0.70	-0.9
1,514,318	+		LRK54_RS07070	0.70	-0.3
1,514,319	-		LRK54_RS07070	0.70	+2.7
1,514,319	-		LRK54_RS07070	0.70	+1.2
1,514,319	-		LRK54_RS07070	0.70	+0.5
1,514,319	-		LRK54_RS07070	0.70	+0.8
1,514,319	-		LRK54_RS07070	0.70	+0.9
1,514,319	-		LRK54_RS07070	0.70	-0.5
1,514,431	+		LRK54_RS07070	0.87	-0.2
1,514,431	+		LRK54_RS07070	0.87	-0.3
1,514,431	+		LRK54_RS07070	0.87	+1.1
1,514,431	+		LRK54_RS07070	0.87	+1.0
1,514,431	+		LRK54_RS07070	0.87	+0.3
1,514,431	+		LRK54_RS07070	0.87	-0.7
1,514,431	+		LRK54_RS07070	0.87	-1.1
1,514,431	+		LRK54_RS07070	0.87	+0.3
1,514,431	+		LRK54_RS07070	0.87	-0.6
1,514,431	+		LRK54_RS07070	0.87	+0.5
1,514,431	+		LRK54_RS07070	0.87	+0.9
1,514,431	+		LRK54_RS07070	0.87	-0.1
1,514,431	+		LRK54_RS07070	0.87	+1.1
1,514,431	+		LRK54_RS07070	0.87	-0.1
1,514,431	+		LRK54_RS07070	0.87	+1.1
1,514,432	-		LRK54_RS07070	0.87	+0.9
1,514,432	-		LRK54_RS07070	0.87	+0.6
1,514,432	-		LRK54_RS07070	0.87	+0.2
1,514,432	-		LRK54_RS07070	0.87	-0.4
1,514,432	-		LRK54_RS07070	0.87	+0.3
1,514,432	-		LRK54_RS07070	0.87	+0.9
1,514,432	-		LRK54_RS07070	0.87	-0.3
1,514,432	-		LRK54_RS07070	0.87	-0.9
1,514,432	-		LRK54_RS07070	0.87	+0.0
1,514,432	-		LRK54_RS07070	0.87	-0.5
1,514,432	-		LRK54_RS07070	0.87	-0.9
1,514,432	-		LRK54_RS07070	0.87	-0.1
1,514,432	-		LRK54_RS07070	0.87	-1.6
1,514,432	-		LRK54_RS07070	0.87	+1.2
1,514,432	-		LRK54_RS07070	0.87	+0.3
1,514,432	-		LRK54_RS07070	0.87	-1.2
1,514,432	-		LRK54_RS07070	0.87	+0.2
1,514,432	-		LRK54_RS07070	0.87	-1.9
1,514,432	-		LRK54_RS07070	0.87	+0.7
1,514,432	-		LRK54_RS07070	0.87	+0.6
1,514,564	+				-0.4
1,514,564	+				-0.9
1,514,564	+				-2.5
1,514,564	+				-1.0
1,514,564	+				-1.3
1,514,564	+				-0.5
1,514,564	+				+0.1
1,514,564	+				+1.5
1,514,564	+				+1.1
1,514,564	+				-0.8
1,514,564	+				-1.2
1,514,564	+				-0.1
1,514,564	+				-1.4
1,514,564	+				-1.6
1,514,564	+				+0.9
1,514,564	+				-0.7
1,514,564	+				-0.5
1,514,564	+				-1.9
1,514,564	+				-3.0
1,514,564	+				-0.7
1,514,565	-				-2.0
1,514,565	-				-0.1
1,514,565	-				-1.9
1,514,565	-				-2.3
1,514,565	-				-0.1
1,514,565	-				-1.4
1,514,565	-				+0.1
1,514,565	-				+1.1
1,514,565	-				-1.5
1,514,565	-				-2.1
1,514,565	-				-1.2
1,514,565	-				+0.1
1,514,565	-				+0.9
1,514,565	-				-0.1
1,514,565	-				-1.0
1,514,565	-				-0.6
1,514,565	-				-2.4
1,514,565	-				-1.0
1,514,597	+				+0.9
1,514,597	+				-0.1
1,514,597	+				-0.1
1,514,597	+				+0.1
1,514,597	+				-1.8
1,514,598	-				-1.2
1,514,598	-				-1.6
1,514,598	-				-0.9
1,514,647	+				+0.5
1,514,648	-				+0.1
1,514,978	+		LRK54_RS07075	0.17	-2.5
1,514,978	+		LRK54_RS07075	0.17	-1.7
1,514,978	+		LRK54_RS07075	0.17	-0.1
1,514,978	+		LRK54_RS07075	0.17	+0.5
1,514,978	+		LRK54_RS07075	0.17	-1.0
1,514,978	+		LRK54_RS07075	0.17	-0.3
1,514,979	-		LRK54_RS07075	0.17	+1.1
1,514,979	-		LRK54_RS07075	0.17	-3.4
1,514,979	-		LRK54_RS07075	0.17	-1.6
1,515,026	+		LRK54_RS07075	0.18	+0.5
1,515,026	+		LRK54_RS07075	0.18	-1.4
1,515,026	+		LRK54_RS07075	0.18	+0.5
1,515,026	+		LRK54_RS07075	0.18	-1.7
1,515,026	+		LRK54_RS07075	0.18	-0.8
1,515,026	+		LRK54_RS07075	0.18	-0.1
1,515,026	+		LRK54_RS07075	0.18	+0.7
1,515,026	+		LRK54_RS07075	0.18	+0.4
1,515,027	-		LRK54_RS07075	0.18	-1.0
1,515,027	-		LRK54_RS07075	0.18	+1.5
1,515,027	-		LRK54_RS07075	0.18	-0.5
1,515,027	-		LRK54_RS07075	0.18	+0.5
1,515,027	-		LRK54_RS07075	0.18	-1.3
1,515,027	-		LRK54_RS07075	0.18	-1.0
1,515,027	-		LRK54_RS07075	0.18	-0.5
1,515,027	-		LRK54_RS07075	0.18	+0.5
1,515,027	-		LRK54_RS07075	0.18	+0.7
1,515,143	+		LRK54_RS07075	0.23	-0.5
1,515,143	+		LRK54_RS07075	0.23	-1.9
1,515,143	+		LRK54_RS07075	0.23	+0.7
1,515,143	+		LRK54_RS07075	0.23	+0.1
1,515,143	+		LRK54_RS07075	0.23	-1.4
1,515,143	+		LRK54_RS07075	0.23	+1.3
1,515,143	+		LRK54_RS07075	0.23	+1.0
1,515,143	+		LRK54_RS07075	0.23	+1.6
1,515,143	+		LRK54_RS07075	0.23	-0.4
1,515,143	+		LRK54_RS07075	0.23	-0.7
1,515,143	+		LRK54_RS07075	0.23	-0.1
1,515,143	+		LRK54_RS07075	0.23	-0.3
1,515,143	+		LRK54_RS07075	0.23	-0.5
1,515,143	+		LRK54_RS07075	0.23	+0.1
1,515,143	+		LRK54_RS07075	0.23	+0.7
1,515,143	+		LRK54_RS07075	0.23	-1.6
1,515,143	+		LRK54_RS07075	0.23	+1.5
1,515,143	+		LRK54_RS07075	0.23	-0.4
1,515,143	+		LRK54_RS07075	0.23	+3.5
1,515,143	+		LRK54_RS07075	0.23	+0.1
1,515,143	+		LRK54_RS07075	0.23	-0.7
1,515,143	+		LRK54_RS07075	0.23	-1.2
1,515,143	+		LRK54_RS07075	0.23	-1.6
1,515,143	+		LRK54_RS07075	0.23	+0.0
1,515,143	+		LRK54_RS07075	0.23	-0.7
1,515,143	+		LRK54_RS07075	0.23	+0.7
1,515,144	-		LRK54_RS07075	0.23	-0.2
1,515,144	-		LRK54_RS07075	0.23	-0.6
1,515,144	-		LRK54_RS07075	0.23	-1.2
1,515,144	-		LRK54_RS07075	0.23	-0.2
1,515,144	-		LRK54_RS07075	0.23	-0.2
1,515,144	-		LRK54_RS07075	0.23	-0.1
1,515,144	-		LRK54_RS07075	0.23	-0.4
1,515,144	-		LRK54_RS07075	0.23	-0.9
1,515,144	-		LRK54_RS07075	0.23	-0.1
1,515,144	-		LRK54_RS07075	0.23	+0.5
1,515,144	-		LRK54_RS07075	0.23	-0.8
1,515,144	-		LRK54_RS07075	0.23	-0.7
1,515,144	-		LRK54_RS07075	0.23	-1.3
1,515,144	-		LRK54_RS07075	0.23	+1.5
1,515,144	-		LRK54_RS07075	0.23	+0.9
1,515,144	-		LRK54_RS07075	0.23	-0.5
1,515,144	-		LRK54_RS07075	0.23	-1.6
1,515,144	-		LRK54_RS07075	0.23	+0.9
1,515,144	-		LRK54_RS07075	0.23	+1.1
1,515,657	-		LRK54_RS07075	0.42	+0.9
1,515,927	-		LRK54_RS07075	0.52	+0.1
1,516,016	+		LRK54_RS07075	0.56	+0.9
1,516,016	+		LRK54_RS07075	0.56	+1.7
1,516,017	-		LRK54_RS07075	0.56	+0.4
1,516,017	-		LRK54_RS07075	0.56	+1.5
1,516,017	-		LRK54_RS07075	0.56	+0.5
1,516,022	+		LRK54_RS07075	0.56	-0.5
1,516,022	+		LRK54_RS07075	0.56	-1.0
1,516,022	+		LRK54_RS07075	0.56	+0.3
1,516,022	+		LRK54_RS07075	0.56	-0.8
1,516,023	-		LRK54_RS07075	0.56	-0.5
1,516,023	-		LRK54_RS07075	0.56	+0.9
1,516,023	-		LRK54_RS07075	0.56	-1.9
1,516,023	-		LRK54_RS07075	0.56	+1.5
1,516,023	-		LRK54_RS07075	0.56	-1.0
1,516,436	+		LRK54_RS07075	0.72	-0.9
1,516,436	+		LRK54_RS07075	0.72	-0.4
1,516,436	+		LRK54_RS07075	0.72	+0.1
1,516,436	+		LRK54_RS07075	0.72	+0.1
1,516,436	+		LRK54_RS07075	0.72	+0.9
1,516,437	-		LRK54_RS07075	0.72	-0.2
1,516,437	-		LRK54_RS07075	0.72	-0.2
1,516,437	-		LRK54_RS07075	0.72	+1.5
1,516,437	-		LRK54_RS07075	0.72	+0.9
1,516,437	-		LRK54_RS07075	0.72	+0.7
1,516,437	-		LRK54_RS07075	0.72	-0.2
1,516,437	-		LRK54_RS07075	0.72	-0.3
1,516,437	-		LRK54_RS07075	0.72	+0.5
1,516,437	-		LRK54_RS07075	0.72	-0.9
1,516,437	-		LRK54_RS07075	0.72	+0.3
1,516,437	-		LRK54_RS07075	0.72	+0.5
1,516,437	-		LRK54_RS07075	0.72	+0.3
1,516,437	-		LRK54_RS07075	0.72	-1.2
1,516,437	-		LRK54_RS07075	0.72	-0.6
1,516,437	-		LRK54_RS07075	0.72	-0.3
1,516,502	+		LRK54_RS07075	0.74	+0.3
1,516,502	+		LRK54_RS07075	0.74	+1.2
1,516,502	+		LRK54_RS07075	0.74	-0.3
1,516,502	+		LRK54_RS07075	0.74	+0.9
1,516,502	+		LRK54_RS07075	0.74	-0.5
1,516,502	+		LRK54_RS07075	0.74	+0.5
1,516,502	+		LRK54_RS07075	0.74	+0.3
1,516,502	+		LRK54_RS07075	0.74	+1.5
1,516,502	+		LRK54_RS07075	0.74	-1.3
1,516,502	+		LRK54_RS07075	0.74	-0.3
1,516,502	+		LRK54_RS07075	0.74	+0.1
1,516,502	+		LRK54_RS07075	0.74	-0.1
1,516,502	+		LRK54_RS07075	0.74	-1.1
1,516,502	+		LRK54_RS07075	0.74	+1.2
1,516,502	+		LRK54_RS07075	0.74	-0.3
1,516,502	+		LRK54_RS07075	0.74	-2.1
1,516,502	+		LRK54_RS07075	0.74	-1.2
1,516,502	+		LRK54_RS07075	0.74	+1.7
1,516,502	+		LRK54_RS07075	0.74	+1.0
1,516,502	+		LRK54_RS07075	0.74	-2.2
1,516,502	+		LRK54_RS07075	0.74	-0.3
1,516,503	-		LRK54_RS07075	0.74	-0.1
1,516,503	-		LRK54_RS07075	0.74	+1.7
1,516,503	-		LRK54_RS07075	0.74	-1.4
1,516,503	-		LRK54_RS07075	0.74	+0.1
1,516,503	-		LRK54_RS07075	0.74	-0.9
1,516,503	-		LRK54_RS07075	0.74	+1.9
1,516,503	-		LRK54_RS07075	0.74	-0.1
1,516,503	-		LRK54_RS07075	0.74	+1.5
1,516,503	-		LRK54_RS07075	0.74	-2.2
1,516,503	-		LRK54_RS07075	0.74	-2.0
1,516,503	-		LRK54_RS07075	0.74	+0.9
1,516,503	-		LRK54_RS07075	0.74	+0.6
1,516,503	-		LRK54_RS07075	0.74	-0.3
1,516,503	-		LRK54_RS07075	0.74	-1.1
1,516,503	-		LRK54_RS07075	0.74	-0.3
1,516,503	-		LRK54_RS07075	0.74	-0.6
1,516,503	-		LRK54_RS07075	0.74	-0.3
1,516,503	-		LRK54_RS07075	0.74	-0.2
1,516,503	-		LRK54_RS07075	0.74	-1.2
1,516,503	-		LRK54_RS07075	0.74	+1.1
1,516,814	+		LRK54_RS07075	0.86	+0.5
1,516,814	+		LRK54_RS07075	0.86	-1.6
1,516,814	+		LRK54_RS07075	0.86	-1.3
1,516,815	-		LRK54_RS07075	0.86	-0.3
1,516,815	-		LRK54_RS07075	0.86	+1.5
1,516,815	-		LRK54_RS07075	0.86	-1.0
1,516,991	+				-0.9
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