Experiment: R2A with nitrate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00930 and LRK54_RS00935 are separated by 166 nucleotides LRK54_RS00935 and LRK54_RS00940 are separated by 34 nucleotides
LRK54_RS00930: LRK54_RS00930 - assimilatory sulfite reductase (NADPH) flavoprotein subunit, at 205,783 to 207,588
_RS00930
LRK54_RS00935: LRK54_RS00935 - sulfite exporter TauE/SafE family protein, at 207,755 to 208,507
_RS00935
LRK54_RS00940: LRK54_RS00940 - cupin domain-containing protein, at 208,542 to 209,738
_RS00940
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 206.777 kb on + strand, within LRK54_RS00930 at 206.778 kb on - strand, within LRK54_RS00930 at 206.778 kb on - strand, within LRK54_RS00930 at 206.778 kb on - strand, within LRK54_RS00930 at 206.778 kb on - strand, within LRK54_RS00930 at 206.778 kb on - strand, within LRK54_RS00930 at 206.778 kb on - strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.894 kb on + strand, within LRK54_RS00930 at 206.895 kb on - strand, within LRK54_RS00930 at 206.895 kb on - strand, within LRK54_RS00930 at 206.895 kb on - strand, within LRK54_RS00930 at 206.895 kb on - strand, within LRK54_RS00930 at 206.895 kb on - strand, within LRK54_RS00930 at 207.110 kb on + strand, within LRK54_RS00930 at 207.110 kb on + strand, within LRK54_RS00930 at 207.110 kb on + strand, within LRK54_RS00930 at 207.111 kb on - strand, within LRK54_RS00930 at 207.259 kb on + strand, within LRK54_RS00930 at 207.281 kb on + strand, within LRK54_RS00930 at 207.381 kb on - strand, within LRK54_RS00930 at 207.485 kb on + strand at 207.486 kb on - strand at 207.486 kb on - strand at 207.486 kb on - strand at 207.611 kb on + strand at 207.611 kb on + strand at 207.611 kb on + strand at 207.611 kb on + strand at 207.612 kb on - strand at 207.612 kb on - strand at 207.612 kb on - strand at 207.612 kb on - strand at 207.612 kb on - strand at 207.612 kb on - strand at 207.612 kb on - strand at 207.630 kb on + strand at 207.630 kb on + strand at 207.630 kb on + strand at 207.630 kb on + strand at 207.630 kb on + strand at 207.630 kb on + strand at 207.631 kb on - strand at 207.631 kb on - strand at 207.631 kb on - strand at 207.631 kb on - strand at 207.631 kb on - strand at 207.631 kb on - strand at 207.676 kb on - strand at 207.676 kb on - strand at 207.723 kb on + strand at 207.723 kb on + strand at 207.724 kb on - strand at 207.724 kb on - strand at 207.724 kb on - strand at 207.724 kb on - strand at 207.724 kb on - strand at 207.740 kb on + strand at 207.836 kb on + strand, within LRK54_RS00935 at 207.837 kb on - strand, within LRK54_RS00935 at 207.837 kb on - strand, within LRK54_RS00935 at 207.837 kb on - strand, within LRK54_RS00935 at 207.837 kb on - strand, within LRK54_RS00935 at 207.908 kb on + strand, within LRK54_RS00935 at 207.909 kb on - strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.028 kb on + strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.029 kb on - strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.079 kb on + strand, within LRK54_RS00935 at 208.080 kb on - strand, within LRK54_RS00935 at 208.080 kb on - strand, within LRK54_RS00935 at 208.080 kb on - strand, within LRK54_RS00935 at 208.080 kb on - strand, within LRK54_RS00935 at 208.080 kb on - strand, within LRK54_RS00935 at 208.080 kb on - strand, within LRK54_RS00935 at 208.080 kb on - strand, within LRK54_RS00935 at 208.080 kb on - strand, within LRK54_RS00935 at 208.421 kb on + strand, within LRK54_RS00935 at 208.421 kb on + strand, within LRK54_RS00935 at 208.421 kb on + strand, within LRK54_RS00935 at 208.421 kb on + strand, within LRK54_RS00935 at 208.421 kb on + strand, within LRK54_RS00935 at 208.421 kb on + strand, within LRK54_RS00935 at 208.421 kb on + strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.422 kb on - strand, within LRK54_RS00935 at 208.502 kb on + strand at 208.502 kb on + strand at 208.502 kb on + strand at 208.502 kb on + strand at 208.502 kb on + strand at 208.502 kb on + strand at 208.502 kb on + strand at 208.502 kb on + strand at 208.502 kb on + strand at 208.502 kb on + strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.503 kb on - strand at 208.530 kb on + strand at 208.531 kb on - strand at 208.531 kb on - strand at 208.531 kb on - strand at 208.531 kb on - strand at 208.629 kb on + strand at 208.629 kb on + strand at 208.629 kb on + strand at 208.629 kb on + strand at 208.630 kb on - strand at 208.630 kb on - strand at 208.630 kb on - strand at 208.938 kb on + strand, within LRK54_RS00940 at 208.938 kb on + strand, within LRK54_RS00940 at 208.938 kb on + strand, within LRK54_RS00940 at 208.939 kb on - strand, within LRK54_RS00940 at 208.939 kb on - strand, within LRK54_RS00940 at 208.939 kb on - strand, within LRK54_RS00940 at 208.980 kb on + strand, within LRK54_RS00940 at 208.980 kb on + strand, within LRK54_RS00940 at 208.980 kb on + strand, within LRK54_RS00940 at 208.980 kb on + strand, within LRK54_RS00940 at 208.980 kb on + strand, within LRK54_RS00940 at 208.980 kb on + strand, within LRK54_RS00940 at 208.980 kb on + strand, within LRK54_RS00940 at 208.981 kb on - strand, within LRK54_RS00940 at 208.981 kb on - strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.136 kb on + strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.137 kb on - strand, within LRK54_RS00940 at 209.443 kb on + strand, within LRK54_RS00940 at 209.444 kb on - strand, within LRK54_RS00940
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 250 mM remove 206,777 + LRK54_RS00930 0.55 +0.5 206,778 - LRK54_RS00930 0.55 +1.7 206,778 - LRK54_RS00930 0.55 -1.4 206,778 - LRK54_RS00930 0.55 -0.8 206,778 - LRK54_RS00930 0.55 +0.0 206,778 - LRK54_RS00930 0.55 +0.6 206,778 - LRK54_RS00930 0.55 -0.9 206,894 + LRK54_RS00930 0.62 +0.8 206,894 + LRK54_RS00930 0.62 +0.4 206,894 + LRK54_RS00930 0.62 +2.0 206,894 + LRK54_RS00930 0.62 -1.1 206,894 + LRK54_RS00930 0.62 -0.7 206,894 + LRK54_RS00930 0.62 +1.1 206,894 + LRK54_RS00930 0.62 -1.1 206,894 + LRK54_RS00930 0.62 -0.4 206,894 + LRK54_RS00930 0.62 +0.1 206,894 + LRK54_RS00930 0.62 -0.5 206,894 + LRK54_RS00930 0.62 -0.1 206,895 - LRK54_RS00930 0.62 -0.8 206,895 - LRK54_RS00930 0.62 +0.4 206,895 - LRK54_RS00930 0.62 +2.2 206,895 - LRK54_RS00930 0.62 -0.2 206,895 - LRK54_RS00930 0.62 +1.4 207,110 + LRK54_RS00930 0.73 -0.6 207,110 + LRK54_RS00930 0.73 -1.4 207,110 + LRK54_RS00930 0.73 -1.7 207,111 - LRK54_RS00930 0.74 +0.0 207,259 + LRK54_RS00930 0.82 +0.1 207,281 + LRK54_RS00930 0.83 -0.8 207,381 - LRK54_RS00930 0.88 +0.3 207,485 + -1.5 207,486 - +0.4 207,486 - -0.4 207,486 - -1.3 207,611 + -0.7 207,611 + -1.0 207,611 + -0.7 207,611 + +0.4 207,612 - +0.9 207,612 - -0.7 207,612 - -1.7 207,612 - -0.7 207,612 - +0.1 207,612 - +1.8 207,612 - -0.3 207,630 + -0.7 207,630 + -0.7 207,630 + -0.9 207,630 + -0.3 207,630 + +2.4 207,630 + +0.1 207,631 - +0.8 207,631 - -0.6 207,631 - -0.2 207,631 - -0.2 207,631 - +1.1 207,631 - +0.1 207,676 - +0.0 207,676 - -1.5 207,723 + +0.4 207,723 + -0.0 207,724 - -0.1 207,724 - -0.2 207,724 - -0.0 207,724 - +0.4 207,724 - +0.8 207,740 + -0.5 207,836 + LRK54_RS00935 0.11 +0.1 207,837 - LRK54_RS00935 0.11 -2.5 207,837 - LRK54_RS00935 0.11 -1.4 207,837 - LRK54_RS00935 0.11 -2.6 207,837 - LRK54_RS00935 0.11 -3.2 207,908 + LRK54_RS00935 0.20 -0.7 207,909 - LRK54_RS00935 0.20 -1.2 208,028 + LRK54_RS00935 0.36 -0.7 208,028 + LRK54_RS00935 0.36 -1.4 208,028 + LRK54_RS00935 0.36 +0.1 208,028 + LRK54_RS00935 0.36 -2.0 208,028 + LRK54_RS00935 0.36 -1.7 208,028 + LRK54_RS00935 0.36 -0.6 208,028 + LRK54_RS00935 0.36 -2.5 208,028 + LRK54_RS00935 0.36 -2.9 208,028 + LRK54_RS00935 0.36 -1.7 208,029 - LRK54_RS00935 0.36 -1.9 208,029 - LRK54_RS00935 0.36 -2.2 208,029 - LRK54_RS00935 0.36 +1.4 208,029 - LRK54_RS00935 0.36 +1.4 208,029 - LRK54_RS00935 0.36 -2.1 208,029 - LRK54_RS00935 0.36 -0.9 208,029 - LRK54_RS00935 0.36 -0.9 208,029 - LRK54_RS00935 0.36 +0.8 208,029 - LRK54_RS00935 0.36 +0.1 208,079 + LRK54_RS00935 0.43 -0.8 208,079 + LRK54_RS00935 0.43 -2.0 208,079 + LRK54_RS00935 0.43 -1.2 208,079 + LRK54_RS00935 0.43 -1.8 208,079 + LRK54_RS00935 0.43 -0.7 208,079 + LRK54_RS00935 0.43 -0.9 208,079 + LRK54_RS00935 0.43 -1.3 208,079 + LRK54_RS00935 0.43 -1.5 208,079 + LRK54_RS00935 0.43 -2.6 208,079 + LRK54_RS00935 0.43 -1.8 208,079 + LRK54_RS00935 0.43 -1.3 208,079 + LRK54_RS00935 0.43 +0.4 208,079 + LRK54_RS00935 0.43 +0.1 208,080 - LRK54_RS00935 0.43 -3.2 208,080 - LRK54_RS00935 0.43 -1.7 208,080 - LRK54_RS00935 0.43 -2.6 208,080 - LRK54_RS00935 0.43 -2.2 208,080 - LRK54_RS00935 0.43 -0.8 208,080 - LRK54_RS00935 0.43 -0.9 208,080 - LRK54_RS00935 0.43 -1.7 208,080 - LRK54_RS00935 0.43 -2.1 208,421 + LRK54_RS00935 0.88 -0.0 208,421 + LRK54_RS00935 0.88 +1.2 208,421 + LRK54_RS00935 0.88 -0.4 208,421 + LRK54_RS00935 0.88 -1.6 208,421 + LRK54_RS00935 0.88 -1.7 208,421 + LRK54_RS00935 0.88 -0.1 208,421 + LRK54_RS00935 0.88 -0.2 208,422 - LRK54_RS00935 0.89 -1.2 208,422 - LRK54_RS00935 0.89 -3.0 208,422 - LRK54_RS00935 0.89 -3.6 208,422 - LRK54_RS00935 0.89 -0.5 208,422 - LRK54_RS00935 0.89 -0.4 208,422 - LRK54_RS00935 0.89 +1.4 208,422 - LRK54_RS00935 0.89 -1.6 208,422 - LRK54_RS00935 0.89 -1.4 208,422 - LRK54_RS00935 0.89 -1.2 208,422 - LRK54_RS00935 0.89 +0.7 208,422 - LRK54_RS00935 0.89 -3.1 208,422 - LRK54_RS00935 0.89 -0.8 208,502 + +0.6 208,502 + +0.8 208,502 + -1.6 208,502 + +0.9 208,502 + -0.3 208,502 + +0.4 208,502 + -0.1 208,502 + -0.2 208,502 + +0.6 208,502 + -2.4 208,503 - +0.9 208,503 - -2.3 208,503 - -1.0 208,503 - -0.1 208,503 - +0.4 208,503 - +1.4 208,503 - +0.1 208,503 - +0.7 208,503 - -1.7 208,503 - -2.6 208,503 - -0.5 208,530 + +0.4 208,531 - -1.8 208,531 - -0.4 208,531 - -0.6 208,531 - +1.3 208,629 + -1.0 208,629 + +0.3 208,629 + +0.2 208,629 + -0.7 208,630 - +1.4 208,630 - +0.5 208,630 - +0.4 208,938 + LRK54_RS00940 0.33 -0.7 208,938 + LRK54_RS00940 0.33 +0.7 208,938 + LRK54_RS00940 0.33 +0.1 208,939 - LRK54_RS00940 0.33 -0.9 208,939 - LRK54_RS00940 0.33 -0.1 208,939 - LRK54_RS00940 0.33 -0.2 208,980 + LRK54_RS00940 0.37 +0.8 208,980 + LRK54_RS00940 0.37 +1.1 208,980 + LRK54_RS00940 0.37 -2.3 208,980 + LRK54_RS00940 0.37 +0.5 208,980 + LRK54_RS00940 0.37 -0.9 208,980 + LRK54_RS00940 0.37 +0.1 208,980 + LRK54_RS00940 0.37 +0.4 208,981 - LRK54_RS00940 0.37 -0.4 208,981 - LRK54_RS00940 0.37 +1.1 209,136 + LRK54_RS00940 0.50 -2.2 209,136 + LRK54_RS00940 0.50 -0.0 209,136 + LRK54_RS00940 0.50 -0.2 209,136 + LRK54_RS00940 0.50 -0.4 209,136 + LRK54_RS00940 0.50 +0.1 209,136 + LRK54_RS00940 0.50 +0.1 209,136 + LRK54_RS00940 0.50 -0.7 209,136 + LRK54_RS00940 0.50 +0.7 209,136 + LRK54_RS00940 0.50 -1.3 209,136 + LRK54_RS00940 0.50 -2.0 209,136 + LRK54_RS00940 0.50 -0.3 209,136 + LRK54_RS00940 0.50 +0.6 209,136 + LRK54_RS00940 0.50 +0.4 209,136 + LRK54_RS00940 0.50 -0.7 209,136 + LRK54_RS00940 0.50 -1.9 209,136 + LRK54_RS00940 0.50 -0.9 209,136 + LRK54_RS00940 0.50 +1.2 209,136 + LRK54_RS00940 0.50 -0.1 209,136 + LRK54_RS00940 0.50 +0.1 209,136 + LRK54_RS00940 0.50 -1.6 209,136 + LRK54_RS00940 0.50 -0.3 209,137 - LRK54_RS00940 0.50 +1.4 209,137 - LRK54_RS00940 0.50 +0.7 209,137 - LRK54_RS00940 0.50 -0.7 209,137 - LRK54_RS00940 0.50 +1.4 209,137 - LRK54_RS00940 0.50 -1.6 209,137 - LRK54_RS00940 0.50 -1.2 209,137 - LRK54_RS00940 0.50 -0.6 209,137 - LRK54_RS00940 0.50 +1.1 209,137 - LRK54_RS00940 0.50 +0.2 209,137 - LRK54_RS00940 0.50 -0.9 209,137 - LRK54_RS00940 0.50 -0.4 209,137 - LRK54_RS00940 0.50 -1.0 209,137 - LRK54_RS00940 0.50 -0.8 209,443 + LRK54_RS00940 0.75 -0.4 209,444 - LRK54_RS00940 0.75 -1.6
Or see this region's nucleotide sequence