Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3505 and Ga0059261_3506 overlap by 4 nucleotides Ga0059261_3506 and Ga0059261_3507 are separated by 85 nucleotides
Ga0059261_3505: Ga0059261_3505 - Predicted permeases, at 3,627,233 to 3,628,333
_3505
Ga0059261_3506: Ga0059261_3506 - Predicted permeases, at 3,628,330 to 3,629,529
_3506
Ga0059261_3507: Ga0059261_3507 - His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain, at 3,629,615 to 3,631,579
_3507
Position (kb)
3628
3629
3630 Strain fitness (log2 ratio)
-2
-1
0
1 at 3628.441 kb on - strand at 3628.450 kb on - strand, within Ga0059261_3506 at 3628.450 kb on - strand, within Ga0059261_3506 at 3628.450 kb on - strand, within Ga0059261_3506 at 3628.450 kb on - strand, within Ga0059261_3506 at 3629.511 kb on - strand at 3629.593 kb on - strand at 3629.593 kb on - strand at 3629.593 kb on - strand at 3629.593 kb on - strand at 3629.593 kb on - strand at 3629.600 kb on - strand at 3629.617 kb on - strand at 3629.617 kb on - strand at 3629.712 kb on - strand at 3629.757 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.770 kb on - strand at 3629.770 kb on - strand at 3629.770 kb on - strand at 3630.100 kb on + strand, within Ga0059261_3507 at 3630.100 kb on + strand, within Ga0059261_3507 at 3630.100 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.340 kb on + strand, within Ga0059261_3507 at 3630.341 kb on - strand, within Ga0059261_3507 at 3630.341 kb on - strand, within Ga0059261_3507 at 3630.341 kb on - strand, within Ga0059261_3507
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,628,441 - -2.1 3,628,450 - Ga0059261_3506 0.10 -0.3 3,628,450 - Ga0059261_3506 0.10 -1.5 3,628,450 - Ga0059261_3506 0.10 +0.5 3,628,450 - Ga0059261_3506 0.10 -1.4 3,629,511 - -2.1 3,629,593 - +0.5 3,629,593 - -0.2 3,629,593 - -0.1 3,629,593 - -0.0 3,629,593 - +0.1 3,629,600 - -0.5 3,629,617 - -0.6 3,629,617 - +0.8 3,629,712 - -1.1 3,629,757 + -0.2 3,629,769 + -0.1 3,629,769 + -0.5 3,629,769 + -0.2 3,629,769 + +0.0 3,629,769 + +0.2 3,629,769 + +0.3 3,629,769 + +0.1 3,629,769 + -0.5 3,629,769 + -0.1 3,629,769 + +0.8 3,629,770 - -0.7 3,629,770 - -0.5 3,629,770 - +0.1 3,630,100 + Ga0059261_3507 0.25 +0.3 3,630,100 + Ga0059261_3507 0.25 -0.1 3,630,100 + Ga0059261_3507 0.25 -0.7 3,630,285 + Ga0059261_3507 0.34 +1.2 3,630,285 + Ga0059261_3507 0.34 -0.2 3,630,285 + Ga0059261_3507 0.34 -0.8 3,630,285 + Ga0059261_3507 0.34 +0.1 3,630,285 + Ga0059261_3507 0.34 -0.3 3,630,285 + Ga0059261_3507 0.34 -0.8 3,630,285 + Ga0059261_3507 0.34 +0.8 3,630,285 + Ga0059261_3507 0.34 -0.4 3,630,286 - Ga0059261_3507 0.34 +0.0 3,630,286 - Ga0059261_3507 0.34 +0.1 3,630,286 - Ga0059261_3507 0.34 -0.2 3,630,286 - Ga0059261_3507 0.34 +0.8 3,630,286 - Ga0059261_3507 0.34 +0.0 3,630,340 + Ga0059261_3507 0.37 +0.3 3,630,341 - Ga0059261_3507 0.37 -0.0 3,630,341 - Ga0059261_3507 0.37 -1.1 3,630,341 - Ga0059261_3507 0.37 +0.0
Or see this region's nucleotide sequence