Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1573

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1572 and Ga0059261_1573 are separated by 77 nucleotidesGa0059261_1573 and Ga0059261_1574 are separated by 99 nucleotides Ga0059261_1572: Ga0059261_1572 - FAD/FMN-containing dehydrogenases, at 1,643,068 to 1,644,510 _1572 Ga0059261_1573: Ga0059261_1573 - hypothetical protein, at 1,644,588 to 1,645,064 _1573 Ga0059261_1574: Ga0059261_1574 - Superfamily II DNA and RNA helicases, at 1,645,164 to 1,646,561 _1574 Position (kb) 1644 1645 1646Strain fitness (log2 ratio) -2 -1 0 1at 1644.572 kb on + strandat 1644.573 kb on - strandat 1644.573 kb on - strandat 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.939 kb on + strand, within Ga0059261_1573at 1644.940 kb on - strand, within Ga0059261_1573at 1644.940 kb on - strand, within Ga0059261_1573at 1644.940 kb on - strandat 1644.940 kb on - strand, within Ga0059261_1573at 1644.940 kb on - strand, within Ga0059261_1573at 1644.951 kb on + strand, within Ga0059261_1573at 1644.952 kb on - strand, within Ga0059261_1573at 1644.952 kb on - strand, within Ga0059261_1573at 1645.028 kb on + strandat 1645.029 kb on - strandat 1645.062 kb on + strandat 1645.063 kb on - strandat 1645.084 kb on + strandat 1645.084 kb on + strandat 1645.084 kb on + strandat 1645.085 kb on - strandat 1645.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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1,644,572 + -0.1
1,644,573 - -0.8
1,644,573 - +0.9
1,644,939 + Ga0059261_1573 0.74 +0.8
1,644,939 + Ga0059261_1573 0.74 +1.5
1,644,939 + Ga0059261_1573 0.74 +0.4
1,644,939 + Ga0059261_1573 0.74 +0.8
1,644,939 + Ga0059261_1573 0.74 -0.5
1,644,939 + Ga0059261_1573 0.74 +0.0
1,644,939 + Ga0059261_1573 0.74 +0.4
1,644,939 + Ga0059261_1573 0.74 +0.0
1,644,939 + Ga0059261_1573 0.74 -2.2
1,644,940 - Ga0059261_1573 0.74 +1.6
1,644,940 - Ga0059261_1573 0.74 -0.1
1,644,940 - -1.2
1,644,940 - Ga0059261_1573 0.74 +0.1
1,644,940 - Ga0059261_1573 0.74 -0.8
1,644,951 + Ga0059261_1573 0.76 -0.1
1,644,952 - Ga0059261_1573 0.76 +0.5
1,644,952 - Ga0059261_1573 0.76 +0.3
1,645,028 + -0.2
1,645,029 - -0.7
1,645,062 + +1.2
1,645,063 - -0.1
1,645,084 + +0.2
1,645,084 + +0.0
1,645,084 + +0.6
1,645,085 - -0.2
1,645,085 - +0.1

Or see this region's nucleotide sequence