Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1438 and Ga0059261_1439 overlap by 4 nucleotides Ga0059261_1439 and Ga0059261_1440 are separated by 28 nucleotides Ga0059261_1440 and Ga0059261_1441 are separated by 10 nucleotides
Ga0059261_1438: Ga0059261_1438 - Membrane proteins related to metalloendopeptidases, at 1,518,331 to 1,519,212
_1438
Ga0059261_1439: Ga0059261_1439 - Uncharacterized protein conserved in bacteria, at 1,519,209 to 1,519,412
_1439
Ga0059261_1440: Ga0059261_1440 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 1,519,441 to 1,520,820
_1440
Ga0059261_1441: Ga0059261_1441 - phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 1,520,831 to 1,522,087
_1441
Position (kb)
1519
1520
1521 Strain fitness (log2 ratio)
-1
0
1 at 1518.659 kb on + strand, within Ga0059261_1438 at 1518.659 kb on + strand, within Ga0059261_1438 at 1518.659 kb on + strand, within Ga0059261_1438 at 1518.659 kb on + strand, within Ga0059261_1438 at 1518.680 kb on + strand, within Ga0059261_1438 at 1518.680 kb on + strand, within Ga0059261_1438 at 1518.840 kb on + strand, within Ga0059261_1438 at 1518.840 kb on + strand, within Ga0059261_1438 at 1518.852 kb on + strand, within Ga0059261_1438 at 1518.852 kb on + strand, within Ga0059261_1438 at 1518.852 kb on + strand, within Ga0059261_1438 at 1518.852 kb on + strand, within Ga0059261_1438 at 1519.252 kb on + strand, within Ga0059261_1439 at 1519.252 kb on + strand, within Ga0059261_1439 at 1519.252 kb on + strand, within Ga0059261_1439 at 1519.252 kb on + strand, within Ga0059261_1439 at 1519.252 kb on + strand, within Ga0059261_1439 at 1519.252 kb on + strand, within Ga0059261_1439 at 1519.253 kb on - strand, within Ga0059261_1439 at 1519.253 kb on - strand, within Ga0059261_1439 at 1519.280 kb on - strand, within Ga0059261_1439 at 1519.280 kb on - strand, within Ga0059261_1439 at 1519.348 kb on - strand, within Ga0059261_1439 at 1519.367 kb on + strand, within Ga0059261_1439 at 1519.368 kb on - strand, within Ga0059261_1439 at 1519.368 kb on - strand, within Ga0059261_1439 at 1519.368 kb on - strand, within Ga0059261_1439 at 1519.368 kb on - strand, within Ga0059261_1439 at 1519.368 kb on - strand, within Ga0059261_1439 at 1519.369 kb on + strand, within Ga0059261_1439 at 1519.369 kb on + strand, within Ga0059261_1439 at 1519.369 kb on + strand, within Ga0059261_1439 at 1519.369 kb on + strand, within Ga0059261_1439 at 1519.369 kb on + strand, within Ga0059261_1439 at 1519.369 kb on + strand, within Ga0059261_1439 at 1519.369 kb on + strand, within Ga0059261_1439 at 1519.370 kb on - strand, within Ga0059261_1439 at 1519.370 kb on - strand, within Ga0059261_1439 at 1519.370 kb on - strand, within Ga0059261_1439 at 1519.370 kb on - strand, within Ga0059261_1439 at 1519.370 kb on - strand, within Ga0059261_1439 at 1519.370 kb on - strand, within Ga0059261_1439 at 1519.431 kb on + strand at 1519.478 kb on + strand at 1519.478 kb on + strand at 1519.479 kb on - strand at 1519.479 kb on - strand at 1519.482 kb on - strand at 1520.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,518,659 + Ga0059261_1438 0.37 -0.6 1,518,659 + Ga0059261_1438 0.37 -0.6 1,518,659 + Ga0059261_1438 0.37 -1.3 1,518,659 + Ga0059261_1438 0.37 -0.6 1,518,680 + Ga0059261_1438 0.40 -0.1 1,518,680 + Ga0059261_1438 0.40 -0.5 1,518,840 + Ga0059261_1438 0.58 -0.7 1,518,840 + Ga0059261_1438 0.58 +0.0 1,518,852 + Ga0059261_1438 0.59 -0.0 1,518,852 + Ga0059261_1438 0.59 -0.3 1,518,852 + Ga0059261_1438 0.59 +0.3 1,518,852 + Ga0059261_1438 0.59 +0.1 1,519,252 + Ga0059261_1439 0.21 -1.0 1,519,252 + Ga0059261_1439 0.21 -0.1 1,519,252 + Ga0059261_1439 0.21 -1.6 1,519,252 + Ga0059261_1439 0.21 -0.2 1,519,252 + Ga0059261_1439 0.21 +0.4 1,519,252 + Ga0059261_1439 0.21 +0.8 1,519,253 - Ga0059261_1439 0.22 +0.4 1,519,253 - Ga0059261_1439 0.22 -0.3 1,519,280 - Ga0059261_1439 0.35 +0.7 1,519,280 - Ga0059261_1439 0.35 -0.5 1,519,348 - Ga0059261_1439 0.68 +0.0 1,519,367 + Ga0059261_1439 0.77 -0.1 1,519,368 - Ga0059261_1439 0.78 +0.1 1,519,368 - Ga0059261_1439 0.78 +0.4 1,519,368 - Ga0059261_1439 0.78 -0.2 1,519,368 - Ga0059261_1439 0.78 +0.0 1,519,368 - Ga0059261_1439 0.78 -1.2 1,519,369 + Ga0059261_1439 0.78 -0.2 1,519,369 + Ga0059261_1439 0.78 +0.2 1,519,369 + Ga0059261_1439 0.78 +0.4 1,519,369 + Ga0059261_1439 0.78 +0.5 1,519,369 + Ga0059261_1439 0.78 +1.6 1,519,369 + Ga0059261_1439 0.78 -0.7 1,519,369 + Ga0059261_1439 0.78 -0.5 1,519,370 - Ga0059261_1439 0.79 -0.5 1,519,370 - Ga0059261_1439 0.79 -0.7 1,519,370 - Ga0059261_1439 0.79 +0.3 1,519,370 - Ga0059261_1439 0.79 +0.2 1,519,370 - Ga0059261_1439 0.79 -1.0 1,519,370 - Ga0059261_1439 0.79 +1.1 1,519,431 + +0.4 1,519,478 + -0.0 1,519,478 + +1.0 1,519,479 - +0.1 1,519,479 - -1.4 1,519,482 - +0.2 1,520,937 - +1.0
Or see this region's nucleotide sequence