Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1440

Experiment: Tetracycline 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1438 and Ga0059261_1439 overlap by 4 nucleotidesGa0059261_1439 and Ga0059261_1440 are separated by 28 nucleotidesGa0059261_1440 and Ga0059261_1441 are separated by 10 nucleotides Ga0059261_1438: Ga0059261_1438 - Membrane proteins related to metalloendopeptidases, at 1,518,331 to 1,519,212 _1438 Ga0059261_1439: Ga0059261_1439 - Uncharacterized protein conserved in bacteria, at 1,519,209 to 1,519,412 _1439 Ga0059261_1440: Ga0059261_1440 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 1,519,441 to 1,520,820 _1440 Ga0059261_1441: Ga0059261_1441 - phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 1,520,831 to 1,522,087 _1441 Position (kb) 1519 1520 1521Strain fitness (log2 ratio) -1 0 1at 1518.659 kb on + strand, within Ga0059261_1438at 1518.659 kb on + strand, within Ga0059261_1438at 1518.659 kb on + strand, within Ga0059261_1438at 1518.659 kb on + strand, within Ga0059261_1438at 1518.680 kb on + strand, within Ga0059261_1438at 1518.680 kb on + strand, within Ga0059261_1438at 1518.840 kb on + strand, within Ga0059261_1438at 1518.840 kb on + strand, within Ga0059261_1438at 1518.852 kb on + strand, within Ga0059261_1438at 1518.852 kb on + strand, within Ga0059261_1438at 1518.852 kb on + strand, within Ga0059261_1438at 1518.852 kb on + strand, within Ga0059261_1438at 1519.252 kb on + strand, within Ga0059261_1439at 1519.252 kb on + strand, within Ga0059261_1439at 1519.252 kb on + strand, within Ga0059261_1439at 1519.252 kb on + strand, within Ga0059261_1439at 1519.252 kb on + strand, within Ga0059261_1439at 1519.252 kb on + strand, within Ga0059261_1439at 1519.253 kb on - strand, within Ga0059261_1439at 1519.253 kb on - strand, within Ga0059261_1439at 1519.280 kb on - strand, within Ga0059261_1439at 1519.280 kb on - strand, within Ga0059261_1439at 1519.348 kb on - strand, within Ga0059261_1439at 1519.367 kb on + strand, within Ga0059261_1439at 1519.368 kb on - strand, within Ga0059261_1439at 1519.368 kb on - strand, within Ga0059261_1439at 1519.368 kb on - strand, within Ga0059261_1439at 1519.368 kb on - strand, within Ga0059261_1439at 1519.368 kb on - strand, within Ga0059261_1439at 1519.369 kb on + strand, within Ga0059261_1439at 1519.369 kb on + strand, within Ga0059261_1439at 1519.369 kb on + strand, within Ga0059261_1439at 1519.369 kb on + strand, within Ga0059261_1439at 1519.369 kb on + strand, within Ga0059261_1439at 1519.369 kb on + strand, within Ga0059261_1439at 1519.369 kb on + strand, within Ga0059261_1439at 1519.370 kb on - strand, within Ga0059261_1439at 1519.370 kb on - strand, within Ga0059261_1439at 1519.370 kb on - strand, within Ga0059261_1439at 1519.370 kb on - strand, within Ga0059261_1439at 1519.370 kb on - strand, within Ga0059261_1439at 1519.370 kb on - strand, within Ga0059261_1439at 1519.431 kb on + strandat 1519.478 kb on + strandat 1519.478 kb on + strandat 1519.479 kb on - strandat 1519.479 kb on - strandat 1519.482 kb on - strandat 1520.937 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
remove
1,518,659 + Ga0059261_1438 0.37 -0.6
1,518,659 + Ga0059261_1438 0.37 -0.6
1,518,659 + Ga0059261_1438 0.37 -1.3
1,518,659 + Ga0059261_1438 0.37 -0.6
1,518,680 + Ga0059261_1438 0.40 -0.1
1,518,680 + Ga0059261_1438 0.40 -0.5
1,518,840 + Ga0059261_1438 0.58 -0.7
1,518,840 + Ga0059261_1438 0.58 +0.0
1,518,852 + Ga0059261_1438 0.59 -0.0
1,518,852 + Ga0059261_1438 0.59 -0.3
1,518,852 + Ga0059261_1438 0.59 +0.3
1,518,852 + Ga0059261_1438 0.59 +0.1
1,519,252 + Ga0059261_1439 0.21 -1.0
1,519,252 + Ga0059261_1439 0.21 -0.1
1,519,252 + Ga0059261_1439 0.21 -1.6
1,519,252 + Ga0059261_1439 0.21 -0.2
1,519,252 + Ga0059261_1439 0.21 +0.4
1,519,252 + Ga0059261_1439 0.21 +0.8
1,519,253 - Ga0059261_1439 0.22 +0.4
1,519,253 - Ga0059261_1439 0.22 -0.3
1,519,280 - Ga0059261_1439 0.35 +0.7
1,519,280 - Ga0059261_1439 0.35 -0.5
1,519,348 - Ga0059261_1439 0.68 +0.0
1,519,367 + Ga0059261_1439 0.77 -0.1
1,519,368 - Ga0059261_1439 0.78 +0.1
1,519,368 - Ga0059261_1439 0.78 +0.4
1,519,368 - Ga0059261_1439 0.78 -0.2
1,519,368 - Ga0059261_1439 0.78 +0.0
1,519,368 - Ga0059261_1439 0.78 -1.2
1,519,369 + Ga0059261_1439 0.78 -0.2
1,519,369 + Ga0059261_1439 0.78 +0.2
1,519,369 + Ga0059261_1439 0.78 +0.4
1,519,369 + Ga0059261_1439 0.78 +0.5
1,519,369 + Ga0059261_1439 0.78 +1.6
1,519,369 + Ga0059261_1439 0.78 -0.7
1,519,369 + Ga0059261_1439 0.78 -0.5
1,519,370 - Ga0059261_1439 0.79 -0.5
1,519,370 - Ga0059261_1439 0.79 -0.7
1,519,370 - Ga0059261_1439 0.79 +0.3
1,519,370 - Ga0059261_1439 0.79 +0.2
1,519,370 - Ga0059261_1439 0.79 -1.0
1,519,370 - Ga0059261_1439 0.79 +1.1
1,519,431 + +0.4
1,519,478 + -0.0
1,519,478 + +1.0
1,519,479 - +0.1
1,519,479 - -1.4
1,519,482 - +0.2
1,520,937 - +1.0

Or see this region's nucleotide sequence