Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1185

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1184 and Ga0059261_1185 are separated by 452 nucleotidesGa0059261_1185 and Ga0059261_1186 are separated by 83 nucleotides Ga0059261_1184: Ga0059261_1184 - Antirestriction protein, at 1,224,722 to 1,225,675 _1184 Ga0059261_1185: Ga0059261_1185 - Thiolase, C-terminal domain, at 1,226,128 to 1,226,333 _1185 Ga0059261_1186: Ga0059261_1186 - AraC-type DNA-binding domain-containing proteins, at 1,226,417 to 1,227,451 _1186 Position (kb) 1226 1227Strain fitness (log2 ratio) -2 -1 0 1 2at 1225.449 kb on + strandat 1225.449 kb on + strand, within Ga0059261_1184at 1225.487 kb on - strand, within Ga0059261_1184at 1225.500 kb on + strand, within Ga0059261_1184at 1225.501 kb on - strand, within Ga0059261_1184at 1225.501 kb on - strand, within Ga0059261_1184at 1225.552 kb on + strand, within Ga0059261_1184at 1225.553 kb on - strand, within Ga0059261_1184at 1225.590 kb on - strandat 1225.623 kb on + strandat 1225.623 kb on + strandat 1225.624 kb on - strandat 1225.924 kb on + strandat 1225.924 kb on + strandat 1225.925 kb on - strandat 1225.925 kb on - strandat 1225.925 kb on - strandat 1225.995 kb on - strandat 1226.040 kb on + strandat 1226.040 kb on + strandat 1226.040 kb on + strandat 1226.040 kb on + strandat 1226.041 kb on - strandat 1226.041 kb on - strandat 1226.041 kb on - strandat 1226.041 kb on - strandat 1226.041 kb on - strandat 1226.041 kb on - strandat 1226.041 kb on - strandat 1226.174 kb on + strand, within Ga0059261_1185at 1226.175 kb on - strand, within Ga0059261_1185at 1226.175 kb on - strand, within Ga0059261_1185at 1226.221 kb on + strand, within Ga0059261_1185at 1226.221 kb on + strand, within Ga0059261_1185at 1226.348 kb on + strandat 1226.348 kb on + strandat 1226.348 kb on + strandat 1226.348 kb on + strandat 1226.349 kb on - strandat 1226.349 kb on - strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.369 kb on + strandat 1226.370 kb on - strandat 1226.370 kb on - strandat 1226.370 kb on - strandat 1226.370 kb on - strandat 1226.370 kb on - strandat 1226.372 kb on - strandat 1226.432 kb on + strandat 1226.432 kb on + strandat 1226.432 kb on + strandat 1226.432 kb on + strandat 1226.433 kb on - strandat 1226.433 kb on - strandat 1226.485 kb on - strandat 1226.485 kb on - strandat 1226.485 kb on - strandat 1226.485 kb on - strandat 1226.672 kb on - strand, within Ga0059261_1186at 1226.697 kb on + strand, within Ga0059261_1186at 1226.697 kb on + strand, within Ga0059261_1186at 1226.697 kb on + strand, within Ga0059261_1186at 1226.697 kb on + strand, within Ga0059261_1186at 1226.697 kb on + strand, within Ga0059261_1186at 1226.697 kb on + strand, within Ga0059261_1186at 1226.698 kb on - strand, within Ga0059261_1186at 1226.698 kb on - strand, within Ga0059261_1186at 1226.700 kb on + strand, within Ga0059261_1186at 1226.700 kb on + strand, within Ga0059261_1186at 1226.700 kb on + strand, within Ga0059261_1186at 1226.700 kb on + strand, within Ga0059261_1186at 1226.700 kb on + strand, within Ga0059261_1186at 1226.700 kb on + strandat 1226.701 kb on - strand, within Ga0059261_1186at 1226.701 kb on - strand, within Ga0059261_1186at 1226.701 kb on - strand, within Ga0059261_1186at 1226.701 kb on - strand, within Ga0059261_1186at 1226.701 kb on - strand, within Ga0059261_1186at 1226.701 kb on - strand, within Ga0059261_1186at 1226.701 kb on - strand, within Ga0059261_1186at 1226.717 kb on + strand, within Ga0059261_1186at 1226.717 kb on + strand, within Ga0059261_1186at 1226.750 kb on + strand, within Ga0059261_1186at 1226.751 kb on - strand, within Ga0059261_1186at 1226.751 kb on - strand, within Ga0059261_1186at 1226.751 kb on - strand, within Ga0059261_1186at 1226.751 kb on - strand, within Ga0059261_1186at 1226.777 kb on + strand, within Ga0059261_1186at 1226.777 kb on + strand, within Ga0059261_1186at 1226.778 kb on - strand, within Ga0059261_1186at 1226.778 kb on - strand, within Ga0059261_1186at 1226.778 kb on - strandat 1226.778 kb on - strand, within Ga0059261_1186at 1226.813 kb on + strand, within Ga0059261_1186at 1226.813 kb on + strandat 1226.813 kb on + strand, within Ga0059261_1186at 1226.813 kb on + strand, within Ga0059261_1186at 1226.814 kb on - strand, within Ga0059261_1186at 1226.814 kb on - strand, within Ga0059261_1186at 1226.814 kb on - strand, within Ga0059261_1186at 1226.845 kb on + strand, within Ga0059261_1186at 1226.989 kb on + strand, within Ga0059261_1186at 1226.989 kb on + strand, within Ga0059261_1186at 1226.990 kb on - strand, within Ga0059261_1186at 1226.990 kb on - strand, within Ga0059261_1186at 1227.189 kb on + strand, within Ga0059261_1186at 1227.189 kb on + strand, within Ga0059261_1186at 1227.189 kb on + strand, within Ga0059261_1186at 1227.189 kb on + strand, within Ga0059261_1186at 1227.190 kb on - strand, within Ga0059261_1186at 1227.190 kb on - strand, within Ga0059261_1186at 1227.190 kb on - strand, within Ga0059261_1186at 1227.190 kb on - strand, within Ga0059261_1186at 1227.190 kb on - strand, within Ga0059261_1186at 1227.190 kb on - strand, within Ga0059261_1186at 1227.190 kb on - strand, within Ga0059261_1186at 1227.238 kb on + strand, within Ga0059261_1186at 1227.255 kb on + strand, within Ga0059261_1186at 1227.256 kb on - strand, within Ga0059261_1186at 1227.285 kb on + strand, within Ga0059261_1186at 1227.285 kb on + strand, within Ga0059261_1186at 1227.285 kb on + strand, within Ga0059261_1186at 1227.285 kb on + strand, within Ga0059261_1186at 1227.286 kb on - strand, within Ga0059261_1186

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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1,225,449 + -0.0
1,225,449 + Ga0059261_1184 0.76 -0.0
1,225,487 - Ga0059261_1184 0.80 +0.0
1,225,500 + Ga0059261_1184 0.82 -0.5
1,225,501 - Ga0059261_1184 0.82 -0.0
1,225,501 - Ga0059261_1184 0.82 -0.2
1,225,552 + Ga0059261_1184 0.87 -0.2
1,225,553 - Ga0059261_1184 0.87 +2.3
1,225,590 - -0.3
1,225,623 + -0.1
1,225,623 + -0.6
1,225,624 - -1.4
1,225,924 + +0.8
1,225,924 + +0.1
1,225,925 - -0.2
1,225,925 - +0.1
1,225,925 - -0.1
1,225,995 - +0.5
1,226,040 + +0.2
1,226,040 + +0.9
1,226,040 + -1.1
1,226,040 + +0.0
1,226,041 - -0.2
1,226,041 - -0.0
1,226,041 - -0.2
1,226,041 - -0.3
1,226,041 - +0.2
1,226,041 - +0.4
1,226,041 - +0.8
1,226,174 + Ga0059261_1185 0.22 -1.0
1,226,175 - Ga0059261_1185 0.23 -0.7
1,226,175 - Ga0059261_1185 0.23 -0.4
1,226,221 + Ga0059261_1185 0.45 +0.5
1,226,221 + Ga0059261_1185 0.45 -0.7
1,226,348 + -0.0
1,226,348 + +0.1
1,226,348 + +0.5
1,226,348 + +0.2
1,226,349 - -1.0
1,226,349 - +0.1
1,226,369 + -0.7
1,226,369 + +1.0
1,226,369 + -0.6
1,226,369 + +1.0
1,226,369 + -0.4
1,226,369 + -0.6
1,226,369 + -0.4
1,226,369 + -1.1
1,226,369 + -0.6
1,226,369 + -0.2
1,226,370 - -1.2
1,226,370 - -0.0
1,226,370 - +0.0
1,226,370 - -0.9
1,226,370 - +0.6
1,226,372 - +0.7
1,226,432 + +0.5
1,226,432 + +0.3
1,226,432 + +0.5
1,226,432 + -0.0
1,226,433 - +0.4
1,226,433 - -1.0
1,226,485 - -0.6
1,226,485 - -0.6
1,226,485 - +0.4
1,226,485 - +0.5
1,226,672 - Ga0059261_1186 0.25 -0.6
1,226,697 + Ga0059261_1186 0.27 +0.3
1,226,697 + Ga0059261_1186 0.27 +0.5
1,226,697 + Ga0059261_1186 0.27 +0.2
1,226,697 + Ga0059261_1186 0.27 -0.7
1,226,697 + Ga0059261_1186 0.27 +0.3
1,226,697 + Ga0059261_1186 0.27 +0.4
1,226,698 - Ga0059261_1186 0.27 +0.2
1,226,698 - Ga0059261_1186 0.27 -0.0
1,226,700 + Ga0059261_1186 0.27 -0.3
1,226,700 + Ga0059261_1186 0.27 +0.2
1,226,700 + Ga0059261_1186 0.27 +0.0
1,226,700 + Ga0059261_1186 0.27 +0.1
1,226,700 + Ga0059261_1186 0.27 +0.2
1,226,700 + -1.8
1,226,701 - Ga0059261_1186 0.27 -0.3
1,226,701 - Ga0059261_1186 0.27 -0.3
1,226,701 - Ga0059261_1186 0.27 +0.4
1,226,701 - Ga0059261_1186 0.27 -0.2
1,226,701 - Ga0059261_1186 0.27 +0.1
1,226,701 - Ga0059261_1186 0.27 +0.6
1,226,701 - Ga0059261_1186 0.27 -1.0
1,226,717 + Ga0059261_1186 0.29 +1.5
1,226,717 + Ga0059261_1186 0.29 -0.6
1,226,750 + Ga0059261_1186 0.32 -0.7
1,226,751 - Ga0059261_1186 0.32 +0.5
1,226,751 - Ga0059261_1186 0.32 -0.0
1,226,751 - Ga0059261_1186 0.32 +0.8
1,226,751 - Ga0059261_1186 0.32 +0.5
1,226,777 + Ga0059261_1186 0.35 +0.4
1,226,777 + Ga0059261_1186 0.35 -2.4
1,226,778 - Ga0059261_1186 0.35 +0.8
1,226,778 - Ga0059261_1186 0.35 +1.0
1,226,778 - +0.4
1,226,778 - Ga0059261_1186 0.35 +1.1
1,226,813 + Ga0059261_1186 0.38 -0.2
1,226,813 + +0.5
1,226,813 + Ga0059261_1186 0.38 -1.5
1,226,813 + Ga0059261_1186 0.38 -0.0
1,226,814 - Ga0059261_1186 0.38 -0.9
1,226,814 - Ga0059261_1186 0.38 +0.5
1,226,814 - Ga0059261_1186 0.38 +0.4
1,226,845 + Ga0059261_1186 0.41 -0.3
1,226,989 + Ga0059261_1186 0.55 +0.0
1,226,989 + Ga0059261_1186 0.55 -0.2
1,226,990 - Ga0059261_1186 0.55 +0.1
1,226,990 - Ga0059261_1186 0.55 +0.4
1,227,189 + Ga0059261_1186 0.75 -0.2
1,227,189 + Ga0059261_1186 0.75 +0.9
1,227,189 + Ga0059261_1186 0.75 -0.1
1,227,189 + Ga0059261_1186 0.75 +0.5
1,227,190 - Ga0059261_1186 0.75 +0.6
1,227,190 - Ga0059261_1186 0.75 -0.0
1,227,190 - Ga0059261_1186 0.75 -0.6
1,227,190 - Ga0059261_1186 0.75 +0.2
1,227,190 - Ga0059261_1186 0.75 -2.2
1,227,190 - Ga0059261_1186 0.75 +0.7
1,227,190 - Ga0059261_1186 0.75 +0.5
1,227,238 + Ga0059261_1186 0.79 +2.0
1,227,255 + Ga0059261_1186 0.81 -0.0
1,227,256 - Ga0059261_1186 0.81 +0.2
1,227,285 + Ga0059261_1186 0.84 +1.2
1,227,285 + Ga0059261_1186 0.84 +1.6
1,227,285 + Ga0059261_1186 0.84 +0.5
1,227,285 + Ga0059261_1186 0.84 +0.3
1,227,286 - Ga0059261_1186 0.84 -0.2

Or see this region's nucleotide sequence