Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1025 and Ga0059261_1026 are separated by 149 nucleotides Ga0059261_1026 and Ga0059261_1027 overlap by 4 nucleotides
Ga0059261_1025: Ga0059261_1025 - outer membrane assembly lipoprotein YfiO, at 1,061,524 to 1,062,384
_1025
Ga0059261_1026: Ga0059261_1026 - DNA repair protein RecN, at 1,062,534 to 1,064,195
_1026
Ga0059261_1027: Ga0059261_1027 - Membrane proteins related to metalloendopeptidases, at 1,064,192 to 1,065,283
_1027
Position (kb)
1062
1063
1064
1065 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1062.238 kb on + strand, within Ga0059261_1025 at 1062.238 kb on + strand, within Ga0059261_1025 at 1062.238 kb on + strand, within Ga0059261_1025 at 1062.239 kb on - strand at 1062.256 kb on + strand at 1062.382 kb on + strand at 1062.382 kb on + strand at 1062.382 kb on + strand at 1062.382 kb on + strand at 1062.382 kb on + strand at 1062.382 kb on + strand at 1062.383 kb on - strand at 1062.383 kb on - strand at 1062.383 kb on - strand at 1062.383 kb on - strand at 1062.383 kb on - strand at 1062.483 kb on - strand at 1062.483 kb on - strand at 1062.523 kb on - strand at 1062.980 kb on + strand, within Ga0059261_1026 at 1063.596 kb on + strand, within Ga0059261_1026 at 1063.596 kb on + strand, within Ga0059261_1026 at 1063.597 kb on - strand, within Ga0059261_1026 at 1063.597 kb on - strand, within Ga0059261_1026 at 1063.597 kb on - strand, within Ga0059261_1026 at 1063.597 kb on - strand, within Ga0059261_1026 at 1063.597 kb on - strand, within Ga0059261_1026 at 1063.597 kb on - strand at 1063.597 kb on - strand, within Ga0059261_1026 at 1063.597 kb on - strand, within Ga0059261_1026 at 1063.599 kb on - strand, within Ga0059261_1026 at 1063.599 kb on - strand, within Ga0059261_1026 at 1064.200 kb on + strand at 1064.200 kb on + strand at 1064.200 kb on + strand at 1064.201 kb on - strand at 1064.298 kb on + strand at 1064.298 kb on + strand at 1064.298 kb on + strand at 1064.298 kb on + strand at 1064.299 kb on - strand at 1064.299 kb on - strand at 1064.333 kb on + strand, within Ga0059261_1027 at 1064.333 kb on + strand, within Ga0059261_1027 at 1064.573 kb on + strand, within Ga0059261_1027 at 1064.574 kb on - strand, within Ga0059261_1027 at 1064.574 kb on - strand, within Ga0059261_1027 at 1064.574 kb on - strand, within Ga0059261_1027 at 1064.574 kb on - strand, within Ga0059261_1027 at 1064.599 kb on + strand, within Ga0059261_1027 at 1064.600 kb on - strand, within Ga0059261_1027 at 1064.684 kb on + strand, within Ga0059261_1027 at 1064.685 kb on - strand, within Ga0059261_1027 at 1064.717 kb on + strand, within Ga0059261_1027 at 1064.717 kb on + strand, within Ga0059261_1027 at 1064.718 kb on - strand, within Ga0059261_1027 at 1064.718 kb on - strand, within Ga0059261_1027 at 1064.724 kb on - strand, within Ga0059261_1027 at 1064.724 kb on - strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.945 kb on + strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.946 kb on - strand, within Ga0059261_1027 at 1064.947 kb on + strand, within Ga0059261_1027 at 1064.947 kb on + strand, within Ga0059261_1027 at 1064.947 kb on + strand, within Ga0059261_1027 at 1064.947 kb on + strand, within Ga0059261_1027 at 1064.985 kb on - strand, within Ga0059261_1027 at 1064.985 kb on - strand, within Ga0059261_1027 at 1064.985 kb on - strand, within Ga0059261_1027 at 1064.985 kb on - strand, within Ga0059261_1027
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,062,238 + Ga0059261_1025 0.83 -0.6 1,062,238 + Ga0059261_1025 0.83 -2.2 1,062,238 + Ga0059261_1025 0.83 -0.6 1,062,239 - -1.8 1,062,256 + -0.0 1,062,382 + +1.8 1,062,382 + +0.2 1,062,382 + +1.1 1,062,382 + -0.2 1,062,382 + +0.2 1,062,382 + -0.2 1,062,383 - -1.9 1,062,383 - +0.2 1,062,383 - +0.5 1,062,383 - +0.3 1,062,383 - +1.0 1,062,483 - -0.1 1,062,483 - -0.6 1,062,523 - +1.7 1,062,980 + Ga0059261_1026 0.27 -0.9 1,063,596 + Ga0059261_1026 0.64 -1.0 1,063,596 + Ga0059261_1026 0.64 -3.1 1,063,597 - Ga0059261_1026 0.64 -0.6 1,063,597 - Ga0059261_1026 0.64 -0.6 1,063,597 - Ga0059261_1026 0.64 +1.2 1,063,597 - Ga0059261_1026 0.64 -0.5 1,063,597 - Ga0059261_1026 0.64 +1.6 1,063,597 - -1.0 1,063,597 - Ga0059261_1026 0.64 +0.2 1,063,597 - Ga0059261_1026 0.64 -1.0 1,063,599 - Ga0059261_1026 0.64 -0.2 1,063,599 - Ga0059261_1026 0.64 -1.0 1,064,200 + -1.8 1,064,200 + +1.9 1,064,200 + -0.4 1,064,201 - +0.4 1,064,298 + -0.6 1,064,298 + -1.8 1,064,298 + +0.0 1,064,298 + +2.0 1,064,299 - -1.9 1,064,299 - +0.1 1,064,333 + Ga0059261_1027 0.13 +0.1 1,064,333 + Ga0059261_1027 0.13 +0.1 1,064,573 + Ga0059261_1027 0.35 +0.7 1,064,574 - Ga0059261_1027 0.35 -0.4 1,064,574 - Ga0059261_1027 0.35 +0.2 1,064,574 - Ga0059261_1027 0.35 -1.4 1,064,574 - Ga0059261_1027 0.35 -0.7 1,064,599 + Ga0059261_1027 0.37 +0.5 1,064,600 - Ga0059261_1027 0.37 -0.2 1,064,684 + Ga0059261_1027 0.45 -0.8 1,064,685 - Ga0059261_1027 0.45 +0.7 1,064,717 + Ga0059261_1027 0.48 +0.2 1,064,717 + Ga0059261_1027 0.48 +1.4 1,064,718 - Ga0059261_1027 0.48 -0.0 1,064,718 - Ga0059261_1027 0.48 -0.3 1,064,724 - Ga0059261_1027 0.49 +0.5 1,064,724 - Ga0059261_1027 0.49 +1.2 1,064,945 + Ga0059261_1027 0.69 +0.1 1,064,945 + Ga0059261_1027 0.69 +0.1 1,064,945 + Ga0059261_1027 0.69 +0.2 1,064,945 + Ga0059261_1027 0.69 -0.2 1,064,945 + Ga0059261_1027 0.69 -1.0 1,064,945 + Ga0059261_1027 0.69 +0.4 1,064,945 + Ga0059261_1027 0.69 +0.1 1,064,945 + Ga0059261_1027 0.69 +0.4 1,064,945 + Ga0059261_1027 0.69 -0.0 1,064,945 + Ga0059261_1027 0.69 -0.4 1,064,946 - Ga0059261_1027 0.69 -0.4 1,064,946 - Ga0059261_1027 0.69 -0.0 1,064,946 - Ga0059261_1027 0.69 -0.1 1,064,946 - Ga0059261_1027 0.69 +1.3 1,064,946 - Ga0059261_1027 0.69 -0.0 1,064,946 - Ga0059261_1027 0.69 +0.1 1,064,946 - Ga0059261_1027 0.69 -0.2 1,064,946 - Ga0059261_1027 0.69 +0.1 1,064,946 - Ga0059261_1027 0.69 +0.2 1,064,946 - Ga0059261_1027 0.69 +0.1 1,064,947 + Ga0059261_1027 0.69 +0.2 1,064,947 + Ga0059261_1027 0.69 -0.3 1,064,947 + Ga0059261_1027 0.69 -0.0 1,064,947 + Ga0059261_1027 0.69 -0.1 1,064,985 - Ga0059261_1027 0.73 -0.4 1,064,985 - Ga0059261_1027 0.73 -0.3 1,064,985 - Ga0059261_1027 0.73 -1.8 1,064,985 - Ga0059261_1027 0.73 +0.2
Or see this region's nucleotide sequence