Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1026

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1025 and Ga0059261_1026 are separated by 149 nucleotidesGa0059261_1026 and Ga0059261_1027 overlap by 4 nucleotides Ga0059261_1025: Ga0059261_1025 - outer membrane assembly lipoprotein YfiO, at 1,061,524 to 1,062,384 _1025 Ga0059261_1026: Ga0059261_1026 - DNA repair protein RecN, at 1,062,534 to 1,064,195 _1026 Ga0059261_1027: Ga0059261_1027 - Membrane proteins related to metalloendopeptidases, at 1,064,192 to 1,065,283 _1027 Position (kb) 1062 1063 1064 1065Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1062.238 kb on + strand, within Ga0059261_1025at 1062.238 kb on + strand, within Ga0059261_1025at 1062.238 kb on + strand, within Ga0059261_1025at 1062.239 kb on - strandat 1062.256 kb on + strandat 1062.382 kb on + strandat 1062.382 kb on + strandat 1062.382 kb on + strandat 1062.382 kb on + strandat 1062.382 kb on + strandat 1062.382 kb on + strandat 1062.383 kb on - strandat 1062.383 kb on - strandat 1062.383 kb on - strandat 1062.383 kb on - strandat 1062.383 kb on - strandat 1062.483 kb on - strandat 1062.483 kb on - strandat 1062.523 kb on - strandat 1062.980 kb on + strand, within Ga0059261_1026at 1063.596 kb on + strand, within Ga0059261_1026at 1063.596 kb on + strand, within Ga0059261_1026at 1063.597 kb on - strand, within Ga0059261_1026at 1063.597 kb on - strand, within Ga0059261_1026at 1063.597 kb on - strand, within Ga0059261_1026at 1063.597 kb on - strand, within Ga0059261_1026at 1063.597 kb on - strand, within Ga0059261_1026at 1063.597 kb on - strandat 1063.597 kb on - strand, within Ga0059261_1026at 1063.597 kb on - strand, within Ga0059261_1026at 1063.599 kb on - strand, within Ga0059261_1026at 1063.599 kb on - strand, within Ga0059261_1026at 1064.200 kb on + strandat 1064.200 kb on + strandat 1064.200 kb on + strandat 1064.201 kb on - strandat 1064.298 kb on + strandat 1064.298 kb on + strandat 1064.298 kb on + strandat 1064.298 kb on + strandat 1064.299 kb on - strandat 1064.299 kb on - strandat 1064.333 kb on + strand, within Ga0059261_1027at 1064.333 kb on + strand, within Ga0059261_1027at 1064.573 kb on + strand, within Ga0059261_1027at 1064.574 kb on - strand, within Ga0059261_1027at 1064.574 kb on - strand, within Ga0059261_1027at 1064.574 kb on - strand, within Ga0059261_1027at 1064.574 kb on - strand, within Ga0059261_1027at 1064.599 kb on + strand, within Ga0059261_1027at 1064.600 kb on - strand, within Ga0059261_1027at 1064.684 kb on + strand, within Ga0059261_1027at 1064.685 kb on - strand, within Ga0059261_1027at 1064.717 kb on + strand, within Ga0059261_1027at 1064.717 kb on + strand, within Ga0059261_1027at 1064.718 kb on - strand, within Ga0059261_1027at 1064.718 kb on - strand, within Ga0059261_1027at 1064.724 kb on - strand, within Ga0059261_1027at 1064.724 kb on - strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.945 kb on + strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.946 kb on - strand, within Ga0059261_1027at 1064.947 kb on + strand, within Ga0059261_1027at 1064.947 kb on + strand, within Ga0059261_1027at 1064.947 kb on + strand, within Ga0059261_1027at 1064.947 kb on + strand, within Ga0059261_1027at 1064.985 kb on - strand, within Ga0059261_1027at 1064.985 kb on - strand, within Ga0059261_1027at 1064.985 kb on - strand, within Ga0059261_1027at 1064.985 kb on - strand, within Ga0059261_1027

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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1,062,238 + Ga0059261_1025 0.83 -0.6
1,062,238 + Ga0059261_1025 0.83 -2.2
1,062,238 + Ga0059261_1025 0.83 -0.6
1,062,239 - -1.8
1,062,256 + -0.0
1,062,382 + +1.8
1,062,382 + +0.2
1,062,382 + +1.1
1,062,382 + -0.2
1,062,382 + +0.2
1,062,382 + -0.2
1,062,383 - -1.9
1,062,383 - +0.2
1,062,383 - +0.5
1,062,383 - +0.3
1,062,383 - +1.0
1,062,483 - -0.1
1,062,483 - -0.6
1,062,523 - +1.7
1,062,980 + Ga0059261_1026 0.27 -0.9
1,063,596 + Ga0059261_1026 0.64 -1.0
1,063,596 + Ga0059261_1026 0.64 -3.1
1,063,597 - Ga0059261_1026 0.64 -0.6
1,063,597 - Ga0059261_1026 0.64 -0.6
1,063,597 - Ga0059261_1026 0.64 +1.2
1,063,597 - Ga0059261_1026 0.64 -0.5
1,063,597 - Ga0059261_1026 0.64 +1.6
1,063,597 - -1.0
1,063,597 - Ga0059261_1026 0.64 +0.2
1,063,597 - Ga0059261_1026 0.64 -1.0
1,063,599 - Ga0059261_1026 0.64 -0.2
1,063,599 - Ga0059261_1026 0.64 -1.0
1,064,200 + -1.8
1,064,200 + +1.9
1,064,200 + -0.4
1,064,201 - +0.4
1,064,298 + -0.6
1,064,298 + -1.8
1,064,298 + +0.0
1,064,298 + +2.0
1,064,299 - -1.9
1,064,299 - +0.1
1,064,333 + Ga0059261_1027 0.13 +0.1
1,064,333 + Ga0059261_1027 0.13 +0.1
1,064,573 + Ga0059261_1027 0.35 +0.7
1,064,574 - Ga0059261_1027 0.35 -0.4
1,064,574 - Ga0059261_1027 0.35 +0.2
1,064,574 - Ga0059261_1027 0.35 -1.4
1,064,574 - Ga0059261_1027 0.35 -0.7
1,064,599 + Ga0059261_1027 0.37 +0.5
1,064,600 - Ga0059261_1027 0.37 -0.2
1,064,684 + Ga0059261_1027 0.45 -0.8
1,064,685 - Ga0059261_1027 0.45 +0.7
1,064,717 + Ga0059261_1027 0.48 +0.2
1,064,717 + Ga0059261_1027 0.48 +1.4
1,064,718 - Ga0059261_1027 0.48 -0.0
1,064,718 - Ga0059261_1027 0.48 -0.3
1,064,724 - Ga0059261_1027 0.49 +0.5
1,064,724 - Ga0059261_1027 0.49 +1.2
1,064,945 + Ga0059261_1027 0.69 +0.1
1,064,945 + Ga0059261_1027 0.69 +0.1
1,064,945 + Ga0059261_1027 0.69 +0.2
1,064,945 + Ga0059261_1027 0.69 -0.2
1,064,945 + Ga0059261_1027 0.69 -1.0
1,064,945 + Ga0059261_1027 0.69 +0.4
1,064,945 + Ga0059261_1027 0.69 +0.1
1,064,945 + Ga0059261_1027 0.69 +0.4
1,064,945 + Ga0059261_1027 0.69 -0.0
1,064,945 + Ga0059261_1027 0.69 -0.4
1,064,946 - Ga0059261_1027 0.69 -0.4
1,064,946 - Ga0059261_1027 0.69 -0.0
1,064,946 - Ga0059261_1027 0.69 -0.1
1,064,946 - Ga0059261_1027 0.69 +1.3
1,064,946 - Ga0059261_1027 0.69 -0.0
1,064,946 - Ga0059261_1027 0.69 +0.1
1,064,946 - Ga0059261_1027 0.69 -0.2
1,064,946 - Ga0059261_1027 0.69 +0.1
1,064,946 - Ga0059261_1027 0.69 +0.2
1,064,946 - Ga0059261_1027 0.69 +0.1
1,064,947 + Ga0059261_1027 0.69 +0.2
1,064,947 + Ga0059261_1027 0.69 -0.3
1,064,947 + Ga0059261_1027 0.69 -0.0
1,064,947 + Ga0059261_1027 0.69 -0.1
1,064,985 - Ga0059261_1027 0.73 -0.4
1,064,985 - Ga0059261_1027 0.73 -0.3
1,064,985 - Ga0059261_1027 0.73 -1.8
1,064,985 - Ga0059261_1027 0.73 +0.2

Or see this region's nucleotide sequence