Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0639

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0638 and Ga0059261_0639 are separated by 13 nucleotidesGa0059261_0639 and Ga0059261_0640 are separated by 180 nucleotidesGa0059261_0640 and Ga0059261_0641 are separated by 11 nucleotidesGa0059261_0641 and Ga0059261_0642 are separated by 17 nucleotides Ga0059261_0638: Ga0059261_0638 - type I secretion outer membrane protein, TolC family, at 679,968 to 681,488 _0638 Ga0059261_0639: Ga0059261_0639 - Protein-L-isoaspartate carboxylmethyltransferase, at 681,502 to 682,161 _0639 Ga0059261_0640: Ga0059261_0640 - tRNA, at 682,342 to 682,415 _0640 Ga0059261_0641: Ga0059261_0641 - hypothetical protein, at 682,427 to 682,687 _0641 Ga0059261_0642: Ga0059261_0642 - Protein of unknown function (DUF3011), at 682,705 to 683,592 _0642 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 680.599 kb on + strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.602 kb on + strand, within Ga0059261_0638at 680.602 kb on + strand, within Ga0059261_0638at 680.602 kb on + strand, within Ga0059261_0638at 680.602 kb on + strand, within Ga0059261_0638at 680.603 kb on - strand, within Ga0059261_0638at 680.665 kb on + strand, within Ga0059261_0638at 680.666 kb on - strand, within Ga0059261_0638at 680.666 kb on - strand, within Ga0059261_0638at 680.666 kb on - strand, within Ga0059261_0638at 680.712 kb on - strand, within Ga0059261_0638at 680.712 kb on - strand, within Ga0059261_0638at 680.815 kb on + strand, within Ga0059261_0638at 680.815 kb on + strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strandat 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 681.022 kb on + strand, within Ga0059261_0638at 681.223 kb on + strand, within Ga0059261_0638at 681.224 kb on - strand, within Ga0059261_0638at 681.224 kb on - strand, within Ga0059261_0638at 681.329 kb on + strand, within Ga0059261_0638at 681.329 kb on + strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strandat 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strandat 681.333 kb on - strandat 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strandat 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strandat 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 682.204 kb on + strandat 682.230 kb on - strandat 682.230 kb on - strandat 682.248 kb on - strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.755 kb on - strandat 682.755 kb on - strandat 682.755 kb on - strandat 682.755 kb on - strandat 682.785 kb on - strandat 682.985 kb on + strand, within Ga0059261_0642at 682.985 kb on + strand, within Ga0059261_0642at 682.986 kb on - strand, within Ga0059261_0642at 682.986 kb on - strand, within Ga0059261_0642at 682.986 kb on - strand, within Ga0059261_0642at 682.986 kb on - strand, within Ga0059261_0642at 683.150 kb on + strand, within Ga0059261_0642at 683.151 kb on - strand, within Ga0059261_0642at 683.151 kb on - strand, within Ga0059261_0642at 683.156 kb on + strand, within Ga0059261_0642

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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680,599 + Ga0059261_0638 0.41 -0.5
680,599 + Ga0059261_0638 0.41 -1.1
680,599 + Ga0059261_0638 0.41 -0.4
680,599 + Ga0059261_0638 0.41 -0.5
680,599 + Ga0059261_0638 0.41 +0.1
680,600 - Ga0059261_0638 0.42 +0.4
680,600 - Ga0059261_0638 0.42 -0.9
680,600 - Ga0059261_0638 0.42 -0.8
680,600 - Ga0059261_0638 0.42 +1.1
680,600 - Ga0059261_0638 0.42 -0.9
680,602 + Ga0059261_0638 0.42 -0.7
680,602 + Ga0059261_0638 0.42 +0.1
680,602 + Ga0059261_0638 0.42 -1.3
680,602 + Ga0059261_0638 0.42 +0.1
680,603 - Ga0059261_0638 0.42 -0.6
680,665 + Ga0059261_0638 0.46 -0.6
680,666 - Ga0059261_0638 0.46 -1.5
680,666 - Ga0059261_0638 0.46 +1.5
680,666 - Ga0059261_0638 0.46 +1.1
680,712 - Ga0059261_0638 0.49 -0.3
680,712 - Ga0059261_0638 0.49 -1.4
680,815 + Ga0059261_0638 0.56 -1.3
680,815 + Ga0059261_0638 0.56 -0.5
680,816 - Ga0059261_0638 0.56 +0.1
680,816 - +2.5
680,816 - Ga0059261_0638 0.56 -1.1
680,816 - Ga0059261_0638 0.56 -0.5
680,816 - Ga0059261_0638 0.56 -1.3
680,816 - Ga0059261_0638 0.56 -0.5
680,816 - Ga0059261_0638 0.56 -0.7
681,022 + Ga0059261_0638 0.69 -1.0
681,223 + Ga0059261_0638 0.83 -1.8
681,224 - Ga0059261_0638 0.83 -0.4
681,224 - Ga0059261_0638 0.83 -0.1
681,329 + Ga0059261_0638 0.89 -0.4
681,329 + Ga0059261_0638 0.89 -0.9
681,330 - Ga0059261_0638 0.90 -0.6
681,330 - Ga0059261_0638 0.90 +0.5
681,330 - Ga0059261_0638 0.90 -0.2
681,330 - Ga0059261_0638 0.90 -0.2
681,330 - Ga0059261_0638 0.90 -1.2
681,330 - Ga0059261_0638 0.90 -0.8
681,332 + Ga0059261_0638 0.90 -0.4
681,332 + Ga0059261_0638 0.90 -1.1
681,332 + Ga0059261_0638 0.90 -0.7
681,332 + Ga0059261_0638 0.90 -1.3
681,332 + Ga0059261_0638 0.90 -2.0
681,332 + Ga0059261_0638 0.90 +0.0
681,332 + Ga0059261_0638 0.90 +0.7
681,332 + Ga0059261_0638 0.90 -2.1
681,333 - Ga0059261_0638 0.90 -1.7
681,333 - Ga0059261_0638 0.90 -1.0
681,333 - Ga0059261_0638 0.90 +0.2
681,333 - +0.9
681,333 - Ga0059261_0638 0.90 +0.5
681,333 - Ga0059261_0638 0.90 -1.8
681,333 - Ga0059261_0638 0.90 -1.4
681,333 - Ga0059261_0638 0.90 -0.7
681,333 - Ga0059261_0638 0.90 -0.1
681,333 - Ga0059261_0638 0.90 -1.4
681,333 - Ga0059261_0638 0.90 +0.2
681,333 - +0.9
681,333 - -0.7
681,333 - Ga0059261_0638 0.90 -0.8
681,333 - Ga0059261_0638 0.90 -0.2
681,333 - Ga0059261_0638 0.90 +0.0
681,334 + Ga0059261_0638 0.90 -1.4
681,334 + Ga0059261_0638 0.90 -0.8
681,334 + Ga0059261_0638 0.90 -1.7
681,334 + Ga0059261_0638 0.90 -1.2
681,334 + Ga0059261_0638 0.90 -0.5
681,335 - Ga0059261_0638 0.90 -2.3
681,335 - Ga0059261_0638 0.90 -0.5
681,335 - Ga0059261_0638 0.90 +0.0
681,335 - Ga0059261_0638 0.90 -0.7
681,335 - +0.9
681,335 - Ga0059261_0638 0.90 -1.0
681,335 - Ga0059261_0638 0.90 -0.7
681,335 - Ga0059261_0638 0.90 -0.7
681,335 - Ga0059261_0638 0.90 -0.3
681,335 - Ga0059261_0638 0.90 -0.6
681,335 - Ga0059261_0638 0.90 -1.6
681,335 - -0.1
681,335 - Ga0059261_0638 0.90 -0.5
681,335 - Ga0059261_0638 0.90 -0.5
682,204 + -0.7
682,230 - -0.7
682,230 - +0.5
682,248 - -0.3
682,754 + -0.3
682,754 + +0.5
682,754 + -1.7
682,754 + +0.2
682,754 + +0.3
682,754 + -0.1
682,754 + +0.5
682,755 - -0.4
682,755 - +0.4
682,755 - +0.2
682,755 - +0.8
682,785 - -2.1
682,985 + Ga0059261_0642 0.32 +0.3
682,985 + Ga0059261_0642 0.32 -0.4
682,986 - Ga0059261_0642 0.32 -0.1
682,986 - Ga0059261_0642 0.32 +0.6
682,986 - Ga0059261_0642 0.32 -0.1
682,986 - Ga0059261_0642 0.32 +0.4
683,150 + Ga0059261_0642 0.50 +1.1
683,151 - Ga0059261_0642 0.50 -0.1
683,151 - Ga0059261_0642 0.50 +0.3
683,156 + Ga0059261_0642 0.51 -0.0

Or see this region's nucleotide sequence