Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0619 and Ga0059261_0620 are separated by 449 nucleotides Ga0059261_0620 and Ga0059261_0621 are separated by 57 nucleotides Ga0059261_0621 and Ga0059261_0622 overlap by 4 nucleotides
Ga0059261_0619: Ga0059261_0619 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 658,136 to 659,476
_0619
Ga0059261_0620: Ga0059261_0620 - Outer membrane cobalamin receptor protein, at 659,926 to 661,821
_0620
Ga0059261_0621: Ga0059261_0621 - cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17), at 661,879 to 662,487
_0621
Ga0059261_0622: Ga0059261_0622 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 662,484 to 663,323
_0622
Position (kb) 659
660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 659.036 kb on + strand, within Ga0059261_0619 at 659.036 kb on + strand, within Ga0059261_0619 at 659.036 kb on + strand, within Ga0059261_0619 at 659.318 kb on + strand, within Ga0059261_0619 at 659.318 kb on + strand, within Ga0059261_0619 at 659.319 kb on - strand, within Ga0059261_0619 at 659.319 kb on - strand, within Ga0059261_0619 at 659.411 kb on + strand at 659.411 kb on + strand at 659.412 kb on - strand at 659.510 kb on - strand at 659.510 kb on - strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.957 kb on - strand at 659.957 kb on - strand at 659.957 kb on - strand at 659.962 kb on + strand at 659.963 kb on - strand at 659.963 kb on - strand at 660.241 kb on + strand, within Ga0059261_0620 at 660.241 kb on + strand, within Ga0059261_0620 at 660.241 kb on + strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.364 kb on + strand, within Ga0059261_0620 at 660.364 kb on + strand, within Ga0059261_0620 at 660.452 kb on - strand, within Ga0059261_0620 at 660.452 kb on - strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.536 kb on - strand, within Ga0059261_0620 at 660.598 kb on + strand, within Ga0059261_0620 at 660.599 kb on - strand, within Ga0059261_0620 at 660.599 kb on - strand, within Ga0059261_0620 at 660.599 kb on - strand, within Ga0059261_0620 at 660.748 kb on + strand, within Ga0059261_0620 at 660.748 kb on + strand, within Ga0059261_0620 at 660.748 kb on + strand, within Ga0059261_0620 at 660.748 kb on + strand, within Ga0059261_0620 at 660.748 kb on + strand, within Ga0059261_0620 at 660.748 kb on + strand, within Ga0059261_0620 at 660.748 kb on + strand, within Ga0059261_0620 at 660.749 kb on - strand, within Ga0059261_0620 at 660.766 kb on + strand, within Ga0059261_0620 at 660.814 kb on + strand, within Ga0059261_0620 at 660.814 kb on + strand, within Ga0059261_0620 at 660.814 kb on + strand, within Ga0059261_0620 at 660.814 kb on + strand, within Ga0059261_0620 at 660.815 kb on - strand, within Ga0059261_0620 at 660.868 kb on + strand, within Ga0059261_0620 at 660.868 kb on + strand, within Ga0059261_0620 at 660.869 kb on - strand, within Ga0059261_0620 at 660.869 kb on - strand, within Ga0059261_0620 at 660.907 kb on + strand, within Ga0059261_0620 at 660.907 kb on + strand, within Ga0059261_0620 at 660.907 kb on + strand, within Ga0059261_0620 at 660.907 kb on + strand, within Ga0059261_0620 at 660.908 kb on - strand, within Ga0059261_0620 at 660.908 kb on - strand, within Ga0059261_0620 at 660.908 kb on - strand, within Ga0059261_0620 at 660.949 kb on + strand, within Ga0059261_0620 at 660.949 kb on + strand, within Ga0059261_0620 at 660.961 kb on + strand, within Ga0059261_0620 at 660.961 kb on + strand, within Ga0059261_0620 at 660.961 kb on + strand, within Ga0059261_0620 at 660.961 kb on + strand, within Ga0059261_0620 at 660.961 kb on + strand, within Ga0059261_0620 at 660.962 kb on - strand, within Ga0059261_0620 at 660.962 kb on - strand, within Ga0059261_0620 at 660.963 kb on + strand at 660.964 kb on - strand, within Ga0059261_0620 at 660.964 kb on - strand, within Ga0059261_0620 at 661.093 kb on - strand, within Ga0059261_0620 at 661.117 kb on + strand, within Ga0059261_0620 at 661.117 kb on + strand, within Ga0059261_0620 at 661.117 kb on + strand, within Ga0059261_0620 at 661.117 kb on + strand, within Ga0059261_0620 at 661.117 kb on + strand, within Ga0059261_0620 at 661.117 kb on + strand, within Ga0059261_0620 at 661.117 kb on + strand, within Ga0059261_0620 at 661.117 kb on + strand, within Ga0059261_0620 at 661.118 kb on - strand, within Ga0059261_0620 at 661.118 kb on - strand, within Ga0059261_0620 at 661.118 kb on - strand, within Ga0059261_0620 at 661.118 kb on - strand, within Ga0059261_0620 at 661.135 kb on + strand, within Ga0059261_0620 at 661.135 kb on + strand, within Ga0059261_0620 at 661.135 kb on + strand, within Ga0059261_0620 at 661.135 kb on + strand, within Ga0059261_0620 at 661.135 kb on + strand, within Ga0059261_0620 at 661.136 kb on - strand, within Ga0059261_0620 at 661.136 kb on - strand, within Ga0059261_0620 at 661.136 kb on - strand, within Ga0059261_0620 at 661.136 kb on - strand, within Ga0059261_0620 at 661.136 kb on - strand, within Ga0059261_0620 at 661.186 kb on + strand, within Ga0059261_0620 at 661.186 kb on + strand, within Ga0059261_0620 at 661.186 kb on + strand, within Ga0059261_0620 at 661.186 kb on + strand, within Ga0059261_0620 at 661.187 kb on - strand, within Ga0059261_0620 at 661.187 kb on - strand, within Ga0059261_0620 at 661.187 kb on - strand, within Ga0059261_0620 at 661.187 kb on - strand, within Ga0059261_0620 at 661.216 kb on + strand, within Ga0059261_0620 at 661.216 kb on + strand, within Ga0059261_0620 at 661.217 kb on - strand, within Ga0059261_0620 at 661.217 kb on - strand, within Ga0059261_0620 at 661.237 kb on + strand, within Ga0059261_0620 at 661.237 kb on + strand, within Ga0059261_0620 at 661.237 kb on + strand, within Ga0059261_0620 at 661.238 kb on - strand, within Ga0059261_0620 at 661.238 kb on - strand, within Ga0059261_0620 at 661.238 kb on - strand, within Ga0059261_0620 at 661.238 kb on - strand, within Ga0059261_0620 at 661.243 kb on + strand, within Ga0059261_0620 at 661.244 kb on - strand, within Ga0059261_0620 at 661.331 kb on - strand, within Ga0059261_0620 at 661.363 kb on + strand, within Ga0059261_0620 at 661.363 kb on + strand, within Ga0059261_0620 at 661.363 kb on + strand, within Ga0059261_0620 at 661.364 kb on - strand, within Ga0059261_0620 at 661.393 kb on + strand, within Ga0059261_0620 at 661.393 kb on + strand, within Ga0059261_0620 at 661.393 kb on + strand, within Ga0059261_0620 at 661.393 kb on + strand, within Ga0059261_0620 at 661.393 kb on + strand, within Ga0059261_0620 at 661.394 kb on - strand, within Ga0059261_0620 at 661.394 kb on - strand, within Ga0059261_0620 at 661.394 kb on - strand, within Ga0059261_0620 at 661.394 kb on - strand, within Ga0059261_0620 at 661.394 kb on - strand, within Ga0059261_0620 at 661.395 kb on + strand, within Ga0059261_0620 at 661.486 kb on + strand, within Ga0059261_0620 at 661.486 kb on + strand, within Ga0059261_0620 at 661.486 kb on + strand, within Ga0059261_0620 at 661.486 kb on + strand, within Ga0059261_0620 at 661.486 kb on + strand, within Ga0059261_0620 at 661.486 kb on + strand, within Ga0059261_0620 at 661.487 kb on - strand, within Ga0059261_0620 at 661.487 kb on - strand, within Ga0059261_0620 at 661.487 kb on - strand, within Ga0059261_0620 at 661.526 kb on + strand, within Ga0059261_0620 at 661.526 kb on + strand, within Ga0059261_0620 at 661.526 kb on + strand, within Ga0059261_0620 at 661.526 kb on + strand, within Ga0059261_0620 at 661.526 kb on + strand, within Ga0059261_0620 at 661.526 kb on + strand, within Ga0059261_0620 at 661.527 kb on - strand, within Ga0059261_0620 at 661.527 kb on - strand, within Ga0059261_0620 at 661.532 kb on + strand, within Ga0059261_0620 at 661.532 kb on + strand, within Ga0059261_0620 at 661.532 kb on + strand, within Ga0059261_0620 at 661.532 kb on + strand, within Ga0059261_0620 at 661.533 kb on - strand, within Ga0059261_0620 at 661.666 kb on + strand at 661.666 kb on + strand at 661.667 kb on - strand at 661.667 kb on - strand at 661.667 kb on - strand at 661.667 kb on - strand at 661.701 kb on + strand at 661.710 kb on + strand at 661.710 kb on + strand at 661.710 kb on + strand at 661.711 kb on - strand at 661.720 kb on + strand at 661.720 kb on + strand at 661.720 kb on + strand at 661.720 kb on + strand at 661.721 kb on - strand at 661.754 kb on - strand at 661.755 kb on + strand at 661.795 kb on + strand at 661.795 kb on + strand at 662.255 kb on - strand, within Ga0059261_0621 at 662.255 kb on - strand, within Ga0059261_0621 at 662.255 kb on - strand, within Ga0059261_0621 at 662.296 kb on + strand, within Ga0059261_0621 at 662.296 kb on + strand, within Ga0059261_0621 at 662.297 kb on - strand, within Ga0059261_0621 at 662.302 kb on + strand at 662.302 kb on + strand, within Ga0059261_0621 at 662.302 kb on + strand, within Ga0059261_0621 at 662.303 kb on - strand, within Ga0059261_0621 at 662.303 kb on - strand, within Ga0059261_0621 at 662.303 kb on - strand, within Ga0059261_0621 at 662.303 kb on - strand, within Ga0059261_0621 at 662.533 kb on + strand at 662.533 kb on + strand at 662.533 kb on + strand at 662.533 kb on + strand at 662.534 kb on - strand at 662.585 kb on + strand, within Ga0059261_0622 at 662.585 kb on + strand, within Ga0059261_0622 at 662.679 kb on + strand, within Ga0059261_0622 at 662.680 kb on - strand, within Ga0059261_0622 at 662.809 kb on + strand, within Ga0059261_0622 at 662.810 kb on - strand, within Ga0059261_0622 at 662.810 kb on - strand, within Ga0059261_0622 at 662.810 kb on - strand, within Ga0059261_0622 at 662.812 kb on + strand, within Ga0059261_0622 at 662.812 kb on + strand, within Ga0059261_0622 at 662.812 kb on + strand, within Ga0059261_0622 at 662.812 kb on + strand, within Ga0059261_0622 at 662.812 kb on + strand, within Ga0059261_0622 at 662.813 kb on - strand, within Ga0059261_0622
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 659,036 + Ga0059261_0619 0.67 +0.4 659,036 + Ga0059261_0619 0.67 +0.7 659,036 + Ga0059261_0619 0.67 +0.3 659,318 + Ga0059261_0619 0.88 -0.9 659,318 + Ga0059261_0619 0.88 -0.7 659,319 - Ga0059261_0619 0.88 -0.1 659,319 - Ga0059261_0619 0.88 +0.5 659,411 + +0.3 659,411 + -0.3 659,412 - +0.2 659,510 - +0.4 659,510 - -0.7 659,639 + -0.6 659,639 + -0.1 659,639 + -0.2 659,639 + -0.4 659,640 - +0.5 659,640 - +0.2 659,640 - -0.7 659,640 - -0.4 659,956 + +0.6 659,956 + -0.5 659,956 + -0.5 659,956 + +2.9 659,957 - -0.1 659,957 - -0.7 659,957 - -1.9 659,962 + -0.9 659,963 - +0.9 659,963 - -0.8 660,241 + Ga0059261_0620 0.17 -0.6 660,241 + Ga0059261_0620 0.17 -0.3 660,241 + Ga0059261_0620 0.17 -2.8 660,242 - Ga0059261_0620 0.17 -1.5 660,242 - Ga0059261_0620 0.17 -1.1 660,242 - Ga0059261_0620 0.17 +0.3 660,242 - Ga0059261_0620 0.17 -0.2 660,242 - Ga0059261_0620 0.17 -2.3 660,242 - Ga0059261_0620 0.17 -0.4 660,292 + Ga0059261_0620 0.19 +0.2 660,292 + Ga0059261_0620 0.19 +0.6 660,292 + Ga0059261_0620 0.19 -2.1 660,364 + Ga0059261_0620 0.23 +0.5 660,364 + Ga0059261_0620 0.23 +0.4 660,452 - Ga0059261_0620 0.28 -0.4 660,452 - Ga0059261_0620 0.28 -0.1 660,460 + Ga0059261_0620 0.28 +0.7 660,460 + Ga0059261_0620 0.28 -1.2 660,460 + Ga0059261_0620 0.28 -0.1 660,460 + Ga0059261_0620 0.28 +0.6 660,536 - Ga0059261_0620 0.32 -2.4 660,598 + Ga0059261_0620 0.35 -1.1 660,599 - Ga0059261_0620 0.35 -0.1 660,599 - Ga0059261_0620 0.35 -2.0 660,599 - Ga0059261_0620 0.35 -1.5 660,748 + Ga0059261_0620 0.43 -0.1 660,748 + Ga0059261_0620 0.43 -0.6 660,748 + Ga0059261_0620 0.43 -0.4 660,748 + Ga0059261_0620 0.43 -0.5 660,748 + Ga0059261_0620 0.43 -0.4 660,748 + Ga0059261_0620 0.43 -0.9 660,748 + Ga0059261_0620 0.43 +0.5 660,749 - Ga0059261_0620 0.43 -0.4 660,766 + Ga0059261_0620 0.44 -0.4 660,814 + Ga0059261_0620 0.47 -0.8 660,814 + Ga0059261_0620 0.47 -0.4 660,814 + Ga0059261_0620 0.47 +0.1 660,814 + Ga0059261_0620 0.47 -0.5 660,815 - Ga0059261_0620 0.47 -0.5 660,868 + Ga0059261_0620 0.50 -0.7 660,868 + Ga0059261_0620 0.50 -1.3 660,869 - Ga0059261_0620 0.50 -0.0 660,869 - Ga0059261_0620 0.50 +0.1 660,907 + Ga0059261_0620 0.52 -0.7 660,907 + Ga0059261_0620 0.52 -1.0 660,907 + Ga0059261_0620 0.52 -0.6 660,907 + Ga0059261_0620 0.52 -2.0 660,908 - Ga0059261_0620 0.52 -0.7 660,908 - Ga0059261_0620 0.52 -0.1 660,908 - Ga0059261_0620 0.52 +0.7 660,949 + Ga0059261_0620 0.54 -0.1 660,949 + Ga0059261_0620 0.54 +2.0 660,961 + Ga0059261_0620 0.55 +1.1 660,961 + Ga0059261_0620 0.55 -0.7 660,961 + Ga0059261_0620 0.55 -1.0 660,961 + Ga0059261_0620 0.55 -1.0 660,961 + Ga0059261_0620 0.55 -0.0 660,962 - Ga0059261_0620 0.55 -0.5 660,962 - Ga0059261_0620 0.55 -0.4 660,963 + +2.5 660,964 - Ga0059261_0620 0.55 -1.0 660,964 - Ga0059261_0620 0.55 +0.3 661,093 - Ga0059261_0620 0.62 -1.9 661,117 + Ga0059261_0620 0.63 +0.3 661,117 + Ga0059261_0620 0.63 +0.2 661,117 + Ga0059261_0620 0.63 -0.3 661,117 + Ga0059261_0620 0.63 +0.6 661,117 + Ga0059261_0620 0.63 +0.1 661,117 + Ga0059261_0620 0.63 -0.7 661,117 + Ga0059261_0620 0.63 -0.3 661,117 + Ga0059261_0620 0.63 +0.0 661,118 - Ga0059261_0620 0.63 -2.1 661,118 - Ga0059261_0620 0.63 -0.2 661,118 - Ga0059261_0620 0.63 +0.3 661,118 - Ga0059261_0620 0.63 -0.7 661,135 + Ga0059261_0620 0.64 -0.1 661,135 + Ga0059261_0620 0.64 +0.7 661,135 + Ga0059261_0620 0.64 -0.6 661,135 + Ga0059261_0620 0.64 +0.9 661,135 + Ga0059261_0620 0.64 +0.4 661,136 - Ga0059261_0620 0.64 -0.7 661,136 - Ga0059261_0620 0.64 -0.8 661,136 - Ga0059261_0620 0.64 +2.5 661,136 - Ga0059261_0620 0.64 -0.9 661,136 - Ga0059261_0620 0.64 +0.1 661,186 + Ga0059261_0620 0.66 -1.0 661,186 + Ga0059261_0620 0.66 -1.6 661,186 + Ga0059261_0620 0.66 -0.5 661,186 + Ga0059261_0620 0.66 -0.5 661,187 - Ga0059261_0620 0.67 -0.4 661,187 - Ga0059261_0620 0.67 -0.7 661,187 - Ga0059261_0620 0.67 -0.6 661,187 - Ga0059261_0620 0.67 +0.2 661,216 + Ga0059261_0620 0.68 -1.2 661,216 + Ga0059261_0620 0.68 -1.4 661,217 - Ga0059261_0620 0.68 -0.9 661,217 - Ga0059261_0620 0.68 -0.4 661,237 + Ga0059261_0620 0.69 -1.7 661,237 + Ga0059261_0620 0.69 -0.9 661,237 + Ga0059261_0620 0.69 +0.3 661,238 - Ga0059261_0620 0.69 -1.9 661,238 - Ga0059261_0620 0.69 +0.4 661,238 - Ga0059261_0620 0.69 -1.0 661,238 - Ga0059261_0620 0.69 -1.0 661,243 + Ga0059261_0620 0.69 -0.6 661,244 - Ga0059261_0620 0.70 -0.1 661,331 - Ga0059261_0620 0.74 -0.5 661,363 + Ga0059261_0620 0.76 +1.3 661,363 + Ga0059261_0620 0.76 -2.3 661,363 + Ga0059261_0620 0.76 -1.4 661,364 - Ga0059261_0620 0.76 -2.3 661,393 + Ga0059261_0620 0.77 -0.3 661,393 + Ga0059261_0620 0.77 -1.0 661,393 + Ga0059261_0620 0.77 +0.7 661,393 + Ga0059261_0620 0.77 -0.5 661,393 + Ga0059261_0620 0.77 -0.1 661,394 - Ga0059261_0620 0.77 -0.4 661,394 - Ga0059261_0620 0.77 -0.7 661,394 - Ga0059261_0620 0.77 -0.3 661,394 - Ga0059261_0620 0.77 +0.0 661,394 - Ga0059261_0620 0.77 -0.2 661,395 + Ga0059261_0620 0.77 -1.1 661,486 + Ga0059261_0620 0.82 +0.2 661,486 + Ga0059261_0620 0.82 -0.5 661,486 + Ga0059261_0620 0.82 -0.9 661,486 + Ga0059261_0620 0.82 -1.8 661,486 + Ga0059261_0620 0.82 -1.1 661,486 + Ga0059261_0620 0.82 +0.4 661,487 - Ga0059261_0620 0.82 +0.9 661,487 - Ga0059261_0620 0.82 -1.3 661,487 - Ga0059261_0620 0.82 +1.6 661,526 + Ga0059261_0620 0.84 +0.1 661,526 + Ga0059261_0620 0.84 -0.7 661,526 + Ga0059261_0620 0.84 +0.1 661,526 + Ga0059261_0620 0.84 -0.7 661,526 + Ga0059261_0620 0.84 +0.1 661,526 + Ga0059261_0620 0.84 +0.4 661,527 - Ga0059261_0620 0.84 -0.5 661,527 - Ga0059261_0620 0.84 +0.9 661,532 + Ga0059261_0620 0.85 -0.1 661,532 + Ga0059261_0620 0.85 -1.0 661,532 + Ga0059261_0620 0.85 +0.3 661,532 + Ga0059261_0620 0.85 -0.0 661,533 - Ga0059261_0620 0.85 +0.7 661,666 + -0.4 661,666 + -0.2 661,667 - -0.2 661,667 - +0.4 661,667 - -0.1 661,667 - -0.5 661,701 + -0.1 661,710 + -0.2 661,710 + -1.7 661,710 + -0.1 661,711 - -1.5 661,720 + +0.7 661,720 + -1.0 661,720 + +0.1 661,720 + -1.2 661,721 - -0.4 661,754 - -0.2 661,755 + -0.2 661,795 + +0.7 661,795 + -0.2 662,255 - Ga0059261_0621 0.62 -0.3 662,255 - Ga0059261_0621 0.62 +0.4 662,255 - Ga0059261_0621 0.62 -0.3 662,296 + Ga0059261_0621 0.68 -0.2 662,296 + Ga0059261_0621 0.68 +1.3 662,297 - Ga0059261_0621 0.69 -0.5 662,302 + +0.9 662,302 + Ga0059261_0621 0.69 -1.5 662,302 + Ga0059261_0621 0.69 +0.4 662,303 - Ga0059261_0621 0.70 +0.2 662,303 - Ga0059261_0621 0.70 -0.7 662,303 - Ga0059261_0621 0.70 +0.3 662,303 - Ga0059261_0621 0.70 -0.4 662,533 + -0.7 662,533 + -0.3 662,533 + -0.8 662,533 + -1.7 662,534 - -1.0 662,585 + Ga0059261_0622 0.12 -0.6 662,585 + Ga0059261_0622 0.12 -0.4 662,679 + Ga0059261_0622 0.23 -1.4 662,680 - Ga0059261_0622 0.23 +0.2 662,809 + Ga0059261_0622 0.39 -0.8 662,810 - Ga0059261_0622 0.39 -0.2 662,810 - Ga0059261_0622 0.39 -0.2 662,810 - Ga0059261_0622 0.39 -1.6 662,812 + Ga0059261_0622 0.39 -0.1 662,812 + Ga0059261_0622 0.39 +0.4 662,812 + Ga0059261_0622 0.39 +0.5 662,812 + Ga0059261_0622 0.39 -0.3 662,812 + Ga0059261_0622 0.39 -0.1 662,813 - Ga0059261_0622 0.39 -1.3
Or see this region's nucleotide sequence