Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0606

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0605 and Ga0059261_0606 overlap by 4 nucleotidesGa0059261_0606 and Ga0059261_0607 overlap by 4 nucleotides Ga0059261_0605: Ga0059261_0605 - hypothetical protein, at 639,076 to 640,368 _0605 Ga0059261_0606: Ga0059261_0606 - Glycosyltransferases involved in cell wall biogenesis, at 640,365 to 641,294 _0606 Ga0059261_0607: Ga0059261_0607 - hypothetical protein, at 641,291 to 642,391 _0607 Position (kb) 640 641 642Strain fitness (log2 ratio) -2 -1 0 1at 639.386 kb on + strand, within Ga0059261_0605at 639.387 kb on - strand, within Ga0059261_0605at 639.413 kb on + strand, within Ga0059261_0605at 639.414 kb on - strand, within Ga0059261_0605at 639.414 kb on - strand, within Ga0059261_0605at 639.614 kb on + strand, within Ga0059261_0605at 639.614 kb on + strand, within Ga0059261_0605at 639.615 kb on - strand, within Ga0059261_0605at 639.615 kb on - strand, within Ga0059261_0605at 639.615 kb on - strand, within Ga0059261_0605at 639.615 kb on - strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.626 kb on + strand, within Ga0059261_0605at 639.627 kb on - strand, within Ga0059261_0605at 639.627 kb on - strand, within Ga0059261_0605at 639.627 kb on - strand, within Ga0059261_0605at 639.627 kb on - strand, within Ga0059261_0605at 639.734 kb on + strand, within Ga0059261_0605at 639.734 kb on + strand, within Ga0059261_0605at 639.734 kb on + strand, within Ga0059261_0605at 639.747 kb on + strand, within Ga0059261_0605at 639.818 kb on + strand, within Ga0059261_0605at 639.818 kb on + strand, within Ga0059261_0605at 639.819 kb on - strand, within Ga0059261_0605at 639.819 kb on - strand, within Ga0059261_0605at 639.819 kb on - strand, within Ga0059261_0605at 640.046 kb on + strand, within Ga0059261_0605at 640.046 kb on + strand, within Ga0059261_0605at 640.046 kb on + strandat 640.046 kb on + strand, within Ga0059261_0605at 640.046 kb on + strand, within Ga0059261_0605at 640.046 kb on + strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.047 kb on - strand, within Ga0059261_0605at 640.055 kb on + strand, within Ga0059261_0605at 640.056 kb on - strand, within Ga0059261_0605at 640.056 kb on - strand, within Ga0059261_0605at 640.056 kb on - strand, within Ga0059261_0605at 640.056 kb on - strand, within Ga0059261_0605at 640.112 kb on + strand, within Ga0059261_0605at 640.113 kb on - strand, within Ga0059261_0605at 640.113 kb on - strand, within Ga0059261_0605at 640.163 kb on + strand, within Ga0059261_0605at 640.163 kb on + strand, within Ga0059261_0605at 640.164 kb on - strand, within Ga0059261_0605at 640.208 kb on + strand, within Ga0059261_0605at 640.208 kb on + strand, within Ga0059261_0605at 640.208 kb on + strand, within Ga0059261_0605at 640.208 kb on + strandat 640.209 kb on - strand, within Ga0059261_0605at 640.209 kb on - strand, within Ga0059261_0605at 640.271 kb on + strandat 640.272 kb on - strandat 641.041 kb on + strand, within Ga0059261_0606at 641.041 kb on + strand, within Ga0059261_0606at 641.041 kb on + strand, within Ga0059261_0606at 641.041 kb on + strand, within Ga0059261_0606at 641.041 kb on + strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.042 kb on - strand, within Ga0059261_0606at 641.050 kb on + strand, within Ga0059261_0606at 641.050 kb on + strand, within Ga0059261_0606at 641.050 kb on + strand, within Ga0059261_0606at 641.051 kb on - strand, within Ga0059261_0606at 641.051 kb on - strand, within Ga0059261_0606at 641.073 kb on + strand, within Ga0059261_0606at 641.074 kb on + strand, within Ga0059261_0606at 641.074 kb on + strand, within Ga0059261_0606at 641.075 kb on - strand, within Ga0059261_0606at 641.075 kb on - strand, within Ga0059261_0606at 641.337 kb on + strandat 641.337 kb on + strandat 641.338 kb on - strandat 641.502 kb on + strand, within Ga0059261_0607at 641.502 kb on + strand, within Ga0059261_0607at 641.502 kb on + strand, within Ga0059261_0607at 641.502 kb on + strand, within Ga0059261_0607at 641.503 kb on - strand, within Ga0059261_0607at 641.503 kb on - strand, within Ga0059261_0607at 641.503 kb on - strand, within Ga0059261_0607at 641.511 kb on + strand, within Ga0059261_0607at 641.511 kb on + strand, within Ga0059261_0607at 641.511 kb on + strand, within Ga0059261_0607at 641.512 kb on - strand, within Ga0059261_0607at 641.554 kb on - strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strandat 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.946 kb on + strand, within Ga0059261_0607at 641.947 kb on - strand, within Ga0059261_0607at 641.947 kb on - strand, within Ga0059261_0607at 641.947 kb on - strand, within Ga0059261_0607at 641.947 kb on - strand, within Ga0059261_0607at 641.947 kb on - strand, within Ga0059261_0607at 641.947 kb on - strand, within Ga0059261_0607at 641.947 kb on - strand, within Ga0059261_0607at 641.947 kb on - strand, within Ga0059261_0607at 642.076 kb on - strand, within Ga0059261_0607at 642.150 kb on + strand, within Ga0059261_0607at 642.150 kb on + strand, within Ga0059261_0607at 642.151 kb on - strand, within Ga0059261_0607at 642.151 kb on - strand, within Ga0059261_0607at 642.151 kb on - strand, within Ga0059261_0607at 642.151 kb on - strand, within Ga0059261_0607at 642.282 kb on + strandat 642.282 kb on + strandat 642.283 kb on - strandat 642.283 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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639,386 + Ga0059261_0605 0.24 +0.6
639,387 - Ga0059261_0605 0.24 +1.2
639,413 + Ga0059261_0605 0.26 +0.4
639,414 - Ga0059261_0605 0.26 +0.2
639,414 - Ga0059261_0605 0.26 -2.1
639,614 + Ga0059261_0605 0.42 -0.2
639,614 + Ga0059261_0605 0.42 -0.5
639,615 - Ga0059261_0605 0.42 +0.3
639,615 - Ga0059261_0605 0.42 +0.2
639,615 - Ga0059261_0605 0.42 -0.3
639,615 - Ga0059261_0605 0.42 +0.5
639,626 + Ga0059261_0605 0.43 +0.6
639,626 + Ga0059261_0605 0.43 -0.3
639,626 + Ga0059261_0605 0.43 -0.1
639,626 + Ga0059261_0605 0.43 +0.4
639,626 + Ga0059261_0605 0.43 -0.7
639,627 - Ga0059261_0605 0.43 +0.7
639,627 - Ga0059261_0605 0.43 +0.5
639,627 - Ga0059261_0605 0.43 +1.3
639,627 - Ga0059261_0605 0.43 +0.3
639,734 + Ga0059261_0605 0.51 -0.4
639,734 + Ga0059261_0605 0.51 +0.5
639,734 + Ga0059261_0605 0.51 -0.1
639,747 + Ga0059261_0605 0.52 -0.1
639,818 + Ga0059261_0605 0.57 -0.6
639,818 + Ga0059261_0605 0.57 -0.3
639,819 - Ga0059261_0605 0.57 +0.5
639,819 - Ga0059261_0605 0.57 +0.6
639,819 - Ga0059261_0605 0.57 +1.5
640,046 + Ga0059261_0605 0.75 -1.0
640,046 + Ga0059261_0605 0.75 -0.3
640,046 + -0.7
640,046 + Ga0059261_0605 0.75 +0.0
640,046 + Ga0059261_0605 0.75 -0.1
640,046 + Ga0059261_0605 0.75 -0.0
640,047 - Ga0059261_0605 0.75 +0.1
640,047 - Ga0059261_0605 0.75 +0.4
640,047 - Ga0059261_0605 0.75 -1.2
640,047 - Ga0059261_0605 0.75 -0.6
640,047 - Ga0059261_0605 0.75 -0.4
640,047 - Ga0059261_0605 0.75 -1.2
640,047 - Ga0059261_0605 0.75 -0.1
640,055 + Ga0059261_0605 0.76 +0.4
640,056 - Ga0059261_0605 0.76 -0.1
640,056 - Ga0059261_0605 0.76 -0.5
640,056 - Ga0059261_0605 0.76 -1.2
640,056 - Ga0059261_0605 0.76 -1.7
640,112 + Ga0059261_0605 0.80 +0.5
640,113 - Ga0059261_0605 0.80 -0.1
640,113 - Ga0059261_0605 0.80 -0.5
640,163 + Ga0059261_0605 0.84 -0.7
640,163 + Ga0059261_0605 0.84 -0.3
640,164 - Ga0059261_0605 0.84 -1.5
640,208 + Ga0059261_0605 0.88 -0.8
640,208 + Ga0059261_0605 0.88 -0.9
640,208 + Ga0059261_0605 0.88 -0.2
640,208 + +0.6
640,209 - Ga0059261_0605 0.88 +0.1
640,209 - Ga0059261_0605 0.88 -1.1
640,271 + +0.2
640,272 - -0.1
641,041 + Ga0059261_0606 0.73 -0.7
641,041 + Ga0059261_0606 0.73 -0.4
641,041 + Ga0059261_0606 0.73 -0.5
641,041 + Ga0059261_0606 0.73 -0.6
641,041 + Ga0059261_0606 0.73 -1.7
641,042 - Ga0059261_0606 0.73 -0.8
641,042 - Ga0059261_0606 0.73 -1.3
641,042 - Ga0059261_0606 0.73 -0.1
641,042 - Ga0059261_0606 0.73 -0.7
641,042 - Ga0059261_0606 0.73 +0.2
641,042 - Ga0059261_0606 0.73 +0.1
641,050 + Ga0059261_0606 0.74 +0.1
641,050 + Ga0059261_0606 0.74 +0.4
641,050 + Ga0059261_0606 0.74 -0.1
641,051 - Ga0059261_0606 0.74 -1.0
641,051 - Ga0059261_0606 0.74 +0.7
641,073 + Ga0059261_0606 0.76 -1.2
641,074 + Ga0059261_0606 0.76 +0.1
641,074 + Ga0059261_0606 0.76 +0.2
641,075 - Ga0059261_0606 0.76 -0.7
641,075 - Ga0059261_0606 0.76 -1.7
641,337 + +0.1
641,337 + -0.7
641,338 - -0.5
641,502 + Ga0059261_0607 0.19 -0.2
641,502 + Ga0059261_0607 0.19 +0.3
641,502 + Ga0059261_0607 0.19 -0.5
641,502 + Ga0059261_0607 0.19 -0.1
641,503 - Ga0059261_0607 0.19 +0.4
641,503 - Ga0059261_0607 0.19 -0.5
641,503 - Ga0059261_0607 0.19 +0.2
641,511 + Ga0059261_0607 0.20 -0.1
641,511 + Ga0059261_0607 0.20 +1.2
641,511 + Ga0059261_0607 0.20 +0.0
641,512 - Ga0059261_0607 0.20 -0.3
641,554 - Ga0059261_0607 0.24 +0.9
641,946 + Ga0059261_0607 0.59 -0.3
641,946 + Ga0059261_0607 0.59 -0.0
641,946 + Ga0059261_0607 0.59 -0.4
641,946 + -0.1
641,946 + Ga0059261_0607 0.59 +0.5
641,946 + Ga0059261_0607 0.59 +1.0
641,946 + Ga0059261_0607 0.59 +0.7
641,946 + Ga0059261_0607 0.59 -0.4
641,946 + Ga0059261_0607 0.59 -0.7
641,946 + Ga0059261_0607 0.59 -0.0
641,946 + Ga0059261_0607 0.59 +0.2
641,946 + Ga0059261_0607 0.59 -0.8
641,946 + Ga0059261_0607 0.59 -0.1
641,947 - Ga0059261_0607 0.60 -0.2
641,947 - Ga0059261_0607 0.60 +0.3
641,947 - Ga0059261_0607 0.60 +0.8
641,947 - Ga0059261_0607 0.60 -0.2
641,947 - Ga0059261_0607 0.60 -1.1
641,947 - Ga0059261_0607 0.60 -0.3
641,947 - Ga0059261_0607 0.60 -0.2
641,947 - Ga0059261_0607 0.60 -0.0
642,076 - Ga0059261_0607 0.71 -0.6
642,150 + Ga0059261_0607 0.78 +0.7
642,150 + Ga0059261_0607 0.78 -2.7
642,151 - Ga0059261_0607 0.78 +0.2
642,151 - Ga0059261_0607 0.78 -0.5
642,151 - Ga0059261_0607 0.78 -1.2
642,151 - Ga0059261_0607 0.78 -0.2
642,282 + +0.1
642,282 + +0.2
642,283 - +0.0
642,283 - +0.2

Or see this region's nucleotide sequence