Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0428

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0427 and Ga0059261_0428 are separated by 296 nucleotidesGa0059261_0428 and Ga0059261_0429 are separated by 13 nucleotidesGa0059261_0429 and Ga0059261_0430 are separated by 38 nucleotides Ga0059261_0427: Ga0059261_0427 - Arabinose efflux permease, at 412,830 to 414,044 _0427 Ga0059261_0428: Ga0059261_0428 - Copper chaperone, at 414,341 to 414,556 _0428 Ga0059261_0429: Ga0059261_0429 - hypothetical protein, at 414,570 to 415,430 _0429 Ga0059261_0430: Ga0059261_0430 - cation diffusion facilitator family transporter, at 415,469 to 416,464 _0430 Position (kb) 414 415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 413.464 kb on + strand, within Ga0059261_0427at 413.464 kb on + strand, within Ga0059261_0427at 413.464 kb on + strand, within Ga0059261_0427at 413.465 kb on - strand, within Ga0059261_0427at 413.499 kb on + strand, within Ga0059261_0427at 413.499 kb on + strand, within Ga0059261_0427at 413.499 kb on + strand, within Ga0059261_0427at 413.499 kb on + strand, within Ga0059261_0427at 413.499 kb on + strand, within Ga0059261_0427at 413.500 kb on - strand, within Ga0059261_0427at 413.500 kb on - strand, within Ga0059261_0427at 413.500 kb on - strand, within Ga0059261_0427at 413.500 kb on - strand, within Ga0059261_0427at 413.500 kb on - strand, within Ga0059261_0427at 413.501 kb on + strand, within Ga0059261_0427at 413.502 kb on - strand, within Ga0059261_0427at 413.660 kb on + strand, within Ga0059261_0427at 413.660 kb on + strand, within Ga0059261_0427at 413.661 kb on - strand, within Ga0059261_0427at 413.661 kb on - strand, within Ga0059261_0427at 413.781 kb on - strand, within Ga0059261_0427at 413.811 kb on + strand, within Ga0059261_0427at 413.811 kb on + strand, within Ga0059261_0427at 413.811 kb on + strand, within Ga0059261_0427at 413.811 kb on + strand, within Ga0059261_0427at 413.811 kb on + strand, within Ga0059261_0427at 413.812 kb on - strand, within Ga0059261_0427at 413.812 kb on - strand, within Ga0059261_0427at 413.812 kb on - strand, within Ga0059261_0427at 413.902 kb on + strand, within Ga0059261_0427at 413.902 kb on + strand, within Ga0059261_0427at 413.902 kb on + strand, within Ga0059261_0427at 413.902 kb on + strand, within Ga0059261_0427at 413.902 kb on + strand, within Ga0059261_0427at 413.902 kb on + strand, within Ga0059261_0427at 413.903 kb on - strand, within Ga0059261_0427at 413.903 kb on - strand, within Ga0059261_0427at 413.903 kb on - strand, within Ga0059261_0427at 413.903 kb on - strand, within Ga0059261_0427at 414.068 kb on + strandat 414.263 kb on + strandat 414.263 kb on + strandat 414.264 kb on - strandat 414.264 kb on - strandat 414.324 kb on + strandat 414.325 kb on - strandat 414.325 kb on - strandat 414.325 kb on - strandat 414.325 kb on - strandat 414.394 kb on + strand, within Ga0059261_0428at 414.395 kb on - strandat 414.414 kb on + strand, within Ga0059261_0428at 414.414 kb on + strand, within Ga0059261_0428at 414.414 kb on + strand, within Ga0059261_0428at 414.414 kb on + strand, within Ga0059261_0428at 414.414 kb on + strand, within Ga0059261_0428at 414.414 kb on + strand, within Ga0059261_0428at 414.415 kb on - strand, within Ga0059261_0428at 414.415 kb on - strand, within Ga0059261_0428at 414.415 kb on - strand, within Ga0059261_0428at 414.415 kb on - strand, within Ga0059261_0428at 414.415 kb on - strand, within Ga0059261_0428at 414.415 kb on - strand, within Ga0059261_0428at 414.415 kb on - strand, within Ga0059261_0428at 414.415 kb on - strand, within Ga0059261_0428at 414.494 kb on + strand, within Ga0059261_0428at 414.494 kb on + strand, within Ga0059261_0428at 414.494 kb on + strand, within Ga0059261_0428at 414.494 kb on + strand, within Ga0059261_0428at 414.495 kb on - strand, within Ga0059261_0428at 414.495 kb on - strand, within Ga0059261_0428at 414.505 kb on + strand, within Ga0059261_0428at 414.505 kb on + strand, within Ga0059261_0428at 414.506 kb on - strand, within Ga0059261_0428at 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.573 kb on + strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.574 kb on - strandat 414.649 kb on + strandat 414.650 kb on - strandat 414.650 kb on - strandat 414.650 kb on - strandat 414.731 kb on + strand, within Ga0059261_0429at 414.732 kb on - strand, within Ga0059261_0429at 414.927 kb on + strand, within Ga0059261_0429at 414.927 kb on + strand, within Ga0059261_0429at 414.928 kb on - strand, within Ga0059261_0429at 414.936 kb on + strand, within Ga0059261_0429at 414.937 kb on - strandat 414.937 kb on - strand, within Ga0059261_0429at 415.065 kb on + strand, within Ga0059261_0429at 415.065 kb on + strand, within Ga0059261_0429at 415.065 kb on + strand, within Ga0059261_0429at 415.065 kb on + strand, within Ga0059261_0429at 415.066 kb on - strand, within Ga0059261_0429at 415.066 kb on - strand, within Ga0059261_0429at 415.066 kb on - strand, within Ga0059261_0429at 415.066 kb on - strand, within Ga0059261_0429at 415.067 kb on + strand, within Ga0059261_0429at 415.067 kb on + strand, within Ga0059261_0429at 415.067 kb on + strand, within Ga0059261_0429at 415.067 kb on + strand, within Ga0059261_0429at 415.067 kb on + strand, within Ga0059261_0429at 415.067 kb on + strand, within Ga0059261_0429at 415.067 kb on + strand, within Ga0059261_0429at 415.067 kb on + strand, within Ga0059261_0429at 415.130 kb on - strand, within Ga0059261_0429at 415.130 kb on - strand, within Ga0059261_0429at 415.130 kb on - strand, within Ga0059261_0429at 415.130 kb on - strand, within Ga0059261_0429at 415.130 kb on - strand, within Ga0059261_0429at 415.130 kb on - strand, within Ga0059261_0429at 415.167 kb on + strand, within Ga0059261_0429at 415.167 kb on + strand, within Ga0059261_0429at 415.167 kb on + strand, within Ga0059261_0429at 415.167 kb on + strand, within Ga0059261_0429at 415.167 kb on + strand, within Ga0059261_0429at 415.167 kb on + strand, within Ga0059261_0429at 415.168 kb on - strand, within Ga0059261_0429at 415.168 kb on - strand, within Ga0059261_0429at 415.168 kb on - strand, within Ga0059261_0429at 415.171 kb on + strandat 415.171 kb on + strand, within Ga0059261_0429at 415.171 kb on + strand, within Ga0059261_0429at 415.172 kb on - strand, within Ga0059261_0429at 415.172 kb on - strand, within Ga0059261_0429at 415.172 kb on - strand, within Ga0059261_0429at 415.218 kb on + strand, within Ga0059261_0429at 415.219 kb on - strand, within Ga0059261_0429at 415.295 kb on + strand, within Ga0059261_0429at 415.295 kb on + strand, within Ga0059261_0429at 415.295 kb on + strand, within Ga0059261_0429at 415.295 kb on + strand, within Ga0059261_0429at 415.295 kb on + strand, within Ga0059261_0429at 415.296 kb on - strand, within Ga0059261_0429at 415.296 kb on - strand, within Ga0059261_0429at 415.296 kb on - strand, within Ga0059261_0429at 415.301 kb on + strand, within Ga0059261_0429at 415.301 kb on + strand, within Ga0059261_0429at 415.301 kb on + strand, within Ga0059261_0429at 415.301 kb on + strand, within Ga0059261_0429at 415.301 kb on + strand, within Ga0059261_0429at 415.302 kb on + strand, within Ga0059261_0429at 415.302 kb on - strand, within Ga0059261_0429at 415.302 kb on - strand, within Ga0059261_0429at 415.302 kb on - strand, within Ga0059261_0429at 415.302 kb on - strand, within Ga0059261_0429at 415.302 kb on - strand, within Ga0059261_0429at 415.302 kb on - strand, within Ga0059261_0429at 415.350 kb on + strandat 415.350 kb on + strandat 415.468 kb on + strandat 415.468 kb on + strandat 415.468 kb on + strandat 415.469 kb on - strandat 415.469 kb on - strandat 415.479 kb on + strandat 415.479 kb on + strandat 415.479 kb on + strandat 415.479 kb on + strandat 415.479 kb on + strandat 415.479 kb on + strandat 415.479 kb on + strandat 415.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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413,464 + Ga0059261_0427 0.52 +0.8
413,464 + Ga0059261_0427 0.52 +0.2
413,464 + Ga0059261_0427 0.52 +0.3
413,465 - Ga0059261_0427 0.52 +0.3
413,499 + Ga0059261_0427 0.55 -0.3
413,499 + Ga0059261_0427 0.55 -2.2
413,499 + Ga0059261_0427 0.55 -1.3
413,499 + Ga0059261_0427 0.55 +0.4
413,499 + Ga0059261_0427 0.55 +0.3
413,500 - Ga0059261_0427 0.55 +0.2
413,500 - Ga0059261_0427 0.55 -0.3
413,500 - Ga0059261_0427 0.55 +0.1
413,500 - Ga0059261_0427 0.55 -0.1
413,500 - Ga0059261_0427 0.55 -0.6
413,501 + Ga0059261_0427 0.55 -0.1
413,502 - Ga0059261_0427 0.55 +0.5
413,660 + Ga0059261_0427 0.68 -0.5
413,660 + Ga0059261_0427 0.68 +0.5
413,661 - Ga0059261_0427 0.68 +0.3
413,661 - Ga0059261_0427 0.68 -0.2
413,781 - Ga0059261_0427 0.78 -1.8
413,811 + Ga0059261_0427 0.81 -0.7
413,811 + Ga0059261_0427 0.81 -0.2
413,811 + Ga0059261_0427 0.81 -0.4
413,811 + Ga0059261_0427 0.81 +1.9
413,811 + Ga0059261_0427 0.81 +0.4
413,812 - Ga0059261_0427 0.81 -0.4
413,812 - Ga0059261_0427 0.81 -0.1
413,812 - Ga0059261_0427 0.81 +0.1
413,902 + Ga0059261_0427 0.88 +1.9
413,902 + Ga0059261_0427 0.88 +0.9
413,902 + Ga0059261_0427 0.88 -0.1
413,902 + Ga0059261_0427 0.88 +0.2
413,902 + Ga0059261_0427 0.88 -0.6
413,902 + Ga0059261_0427 0.88 -0.4
413,903 - Ga0059261_0427 0.88 -0.7
413,903 - Ga0059261_0427 0.88 +0.0
413,903 - Ga0059261_0427 0.88 +1.2
413,903 - Ga0059261_0427 0.88 +0.8
414,068 + -0.1
414,263 + -1.1
414,263 + -0.1
414,264 - -0.2
414,264 - +0.3
414,324 + +0.1
414,325 - -0.5
414,325 - +0.1
414,325 - +0.4
414,325 - -0.2
414,394 + Ga0059261_0428 0.25 -0.0
414,395 - +0.9
414,414 + Ga0059261_0428 0.34 +0.4
414,414 + Ga0059261_0428 0.34 +0.7
414,414 + Ga0059261_0428 0.34 +1.2
414,414 + Ga0059261_0428 0.34 -0.2
414,414 + Ga0059261_0428 0.34 +0.3
414,414 + Ga0059261_0428 0.34 -0.1
414,415 - Ga0059261_0428 0.34 -0.3
414,415 - Ga0059261_0428 0.34 +0.5
414,415 - Ga0059261_0428 0.34 +0.6
414,415 - Ga0059261_0428 0.34 +0.6
414,415 - Ga0059261_0428 0.34 +0.2
414,415 - Ga0059261_0428 0.34 -0.1
414,415 - Ga0059261_0428 0.34 +0.1
414,415 - Ga0059261_0428 0.34 +0.1
414,494 + Ga0059261_0428 0.71 -0.9
414,494 + Ga0059261_0428 0.71 +0.7
414,494 + Ga0059261_0428 0.71 +0.9
414,494 + Ga0059261_0428 0.71 +0.2
414,495 - Ga0059261_0428 0.71 -0.8
414,495 - Ga0059261_0428 0.71 -0.1
414,505 + Ga0059261_0428 0.76 -0.4
414,505 + Ga0059261_0428 0.76 +0.7
414,506 - Ga0059261_0428 0.76 +0.7
414,573 + +0.3
414,573 + -0.6
414,573 + +0.3
414,573 + +0.1
414,573 + -1.4
414,573 + +0.0
414,573 + -0.3
414,573 + -0.7
414,573 + -0.8
414,573 + -0.7
414,573 + +0.9
414,574 - -0.5
414,574 - -1.1
414,574 - +0.1
414,574 - -0.5
414,574 - -0.7
414,574 - -0.0
414,574 - -0.5
414,574 - -0.3
414,574 - +0.3
414,574 - -0.6
414,649 + +0.0
414,650 - -0.2
414,650 - -0.1
414,650 - -0.1
414,731 + Ga0059261_0429 0.19 +0.2
414,732 - Ga0059261_0429 0.19 -0.8
414,927 + Ga0059261_0429 0.41 -0.1
414,927 + Ga0059261_0429 0.41 +0.3
414,928 - Ga0059261_0429 0.42 +0.8
414,936 + Ga0059261_0429 0.43 -0.2
414,937 - -0.1
414,937 - Ga0059261_0429 0.43 +0.8
415,065 + Ga0059261_0429 0.57 +0.5
415,065 + Ga0059261_0429 0.57 +0.7
415,065 + Ga0059261_0429 0.57 -0.1
415,065 + Ga0059261_0429 0.57 +0.6
415,066 - Ga0059261_0429 0.58 +0.2
415,066 - Ga0059261_0429 0.58 +0.3
415,066 - Ga0059261_0429 0.58 +0.3
415,066 - Ga0059261_0429 0.58 -1.1
415,067 + Ga0059261_0429 0.58 +1.9
415,067 + Ga0059261_0429 0.58 -0.6
415,067 + Ga0059261_0429 0.58 -0.3
415,067 + Ga0059261_0429 0.58 +2.5
415,067 + Ga0059261_0429 0.58 +1.2
415,067 + Ga0059261_0429 0.58 -0.2
415,067 + Ga0059261_0429 0.58 -0.4
415,067 + Ga0059261_0429 0.58 +0.8
415,130 - Ga0059261_0429 0.65 +1.3
415,130 - Ga0059261_0429 0.65 +0.0
415,130 - Ga0059261_0429 0.65 -0.4
415,130 - Ga0059261_0429 0.65 +0.7
415,130 - Ga0059261_0429 0.65 -0.9
415,130 - Ga0059261_0429 0.65 +0.5
415,167 + Ga0059261_0429 0.69 -0.3
415,167 + Ga0059261_0429 0.69 +0.9
415,167 + Ga0059261_0429 0.69 -0.2
415,167 + Ga0059261_0429 0.69 -0.4
415,167 + Ga0059261_0429 0.69 -0.6
415,167 + Ga0059261_0429 0.69 +0.2
415,168 - Ga0059261_0429 0.69 -1.0
415,168 - Ga0059261_0429 0.69 +0.9
415,168 - Ga0059261_0429 0.69 +0.7
415,171 + -1.4
415,171 + Ga0059261_0429 0.70 +0.1
415,171 + Ga0059261_0429 0.70 +0.1
415,172 - Ga0059261_0429 0.70 +0.3
415,172 - Ga0059261_0429 0.70 -0.0
415,172 - Ga0059261_0429 0.70 -0.5
415,218 + Ga0059261_0429 0.75 -0.4
415,219 - Ga0059261_0429 0.75 +0.6
415,295 + Ga0059261_0429 0.84 -0.5
415,295 + Ga0059261_0429 0.84 -0.4
415,295 + Ga0059261_0429 0.84 -0.9
415,295 + Ga0059261_0429 0.84 -0.5
415,295 + Ga0059261_0429 0.84 -1.1
415,296 - Ga0059261_0429 0.84 +0.9
415,296 - Ga0059261_0429 0.84 +0.5
415,296 - Ga0059261_0429 0.84 +0.1
415,301 + Ga0059261_0429 0.85 +0.3
415,301 + Ga0059261_0429 0.85 -1.4
415,301 + Ga0059261_0429 0.85 +0.8
415,301 + Ga0059261_0429 0.85 +0.4
415,301 + Ga0059261_0429 0.85 +0.3
415,302 + Ga0059261_0429 0.85 -0.5
415,302 - Ga0059261_0429 0.85 +0.1
415,302 - Ga0059261_0429 0.85 -0.1
415,302 - Ga0059261_0429 0.85 +0.2
415,302 - Ga0059261_0429 0.85 +0.9
415,302 - Ga0059261_0429 0.85 +0.4
415,302 - Ga0059261_0429 0.85 -2.8
415,350 + -0.1
415,350 + -0.0
415,468 + +0.6
415,468 + +0.0
415,468 + -0.8
415,469 - -1.5
415,469 - -1.0
415,479 + -0.9
415,479 + -0.8
415,479 + +0.0
415,479 + -0.4
415,479 + +0.3
415,479 + +0.0
415,479 + +0.1
415,480 - -1.6

Or see this region's nucleotide sequence