Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0419 and Ga0059261_0420 are separated by 81 nucleotides Ga0059261_0420 and Ga0059261_0421 overlap by 4 nucleotides
Ga0059261_0419: Ga0059261_0419 - TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain, at 403,016 to 405,937
_0419
Ga0059261_0420: Ga0059261_0420 - FecR family protein, at 406,019 to 407,014
_0420
Ga0059261_0421: Ga0059261_0421 - RNA polymerase sigma factor, sigma-70 family, at 407,011 to 407,628
_0421
Position (kb) 406
407
408 Strain fitness (log2 ratio) -1
0
1
2 at 405.039 kb on + strand, within Ga0059261_0419 at 405.039 kb on + strand at 405.039 kb on + strand, within Ga0059261_0419 at 405.040 kb on - strand, within Ga0059261_0419 at 405.040 kb on - strand, within Ga0059261_0419 at 405.040 kb on - strand, within Ga0059261_0419 at 405.042 kb on + strand, within Ga0059261_0419 at 405.042 kb on + strand, within Ga0059261_0419 at 405.042 kb on + strand, within Ga0059261_0419 at 405.042 kb on + strand, within Ga0059261_0419 at 405.042 kb on + strand, within Ga0059261_0419 at 405.042 kb on + strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.043 kb on - strand, within Ga0059261_0419 at 405.048 kb on + strand, within Ga0059261_0419 at 405.122 kb on - strand, within Ga0059261_0419 at 405.210 kb on + strand, within Ga0059261_0419 at 405.211 kb on - strand, within Ga0059261_0419 at 405.211 kb on - strand, within Ga0059261_0419 at 405.211 kb on - strand, within Ga0059261_0419 at 405.493 kb on - strand, within Ga0059261_0419 at 405.718 kb on + strand at 405.718 kb on + strand at 405.719 kb on - strand at 405.719 kb on - strand at 405.719 kb on - strand at 405.719 kb on - strand at 405.719 kb on - strand at 405.719 kb on - strand at 405.720 kb on + strand at 405.720 kb on + strand at 405.720 kb on + strand at 405.778 kb on + strand at 405.778 kb on + strand at 405.778 kb on + strand at 405.779 kb on - strand at 405.842 kb on + strand at 405.842 kb on + strand at 405.842 kb on + strand at 405.842 kb on + strand at 405.842 kb on + strand at 405.842 kb on + strand at 405.842 kb on + strand at 405.843 kb on - strand at 405.843 kb on - strand at 405.843 kb on - strand at 405.843 kb on - strand at 405.843 kb on - strand at 405.843 kb on - strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.965 kb on + strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 405.966 kb on - strand at 406.005 kb on + strand at 406.005 kb on + strand at 406.006 kb on - strand at 406.020 kb on + strand at 406.020 kb on + strand at 406.021 kb on - strand at 406.021 kb on - strand at 406.282 kb on + strand, within Ga0059261_0420 at 406.283 kb on - strand, within Ga0059261_0420 at 406.283 kb on - strand, within Ga0059261_0420 at 406.283 kb on - strand, within Ga0059261_0420 at 406.283 kb on - strand, within Ga0059261_0420 at 406.286 kb on + strand, within Ga0059261_0420 at 406.286 kb on + strand, within Ga0059261_0420 at 406.287 kb on - strand, within Ga0059261_0420 at 406.287 kb on - strand, within Ga0059261_0420 at 406.557 kb on + strand, within Ga0059261_0420 at 406.558 kb on - strand, within Ga0059261_0420 at 406.558 kb on - strand, within Ga0059261_0420 at 406.576 kb on + strand, within Ga0059261_0420 at 406.576 kb on + strand, within Ga0059261_0420 at 406.576 kb on + strand, within Ga0059261_0420 at 406.577 kb on - strand, within Ga0059261_0420 at 406.577 kb on - strand, within Ga0059261_0420 at 406.577 kb on - strand, within Ga0059261_0420 at 406.577 kb on - strand, within Ga0059261_0420 at 406.589 kb on + strand, within Ga0059261_0420 at 407.039 kb on + strand at 407.040 kb on - strand at 407.040 kb on - strand at 407.058 kb on + strand at 407.058 kb on + strand at 407.058 kb on + strand at 407.058 kb on + strand at 407.058 kb on + strand at 407.058 kb on + strand at 407.059 kb on - strand at 407.059 kb on - strand at 407.111 kb on + strand, within Ga0059261_0421 at 407.111 kb on + strand at 407.111 kb on + strand, within Ga0059261_0421 at 407.111 kb on + strand at 407.111 kb on + strand, within Ga0059261_0421 at 407.111 kb on + strand, within Ga0059261_0421 at 407.111 kb on + strand, within Ga0059261_0421 at 407.111 kb on + strand, within Ga0059261_0421 at 407.112 kb on - strand at 407.112 kb on - strand, within Ga0059261_0421 at 407.112 kb on - strand, within Ga0059261_0421 at 407.112 kb on - strand, within Ga0059261_0421 at 407.112 kb on - strand, within Ga0059261_0421 at 407.112 kb on - strand, within Ga0059261_0421 at 407.112 kb on - strand, within Ga0059261_0421 at 407.112 kb on - strand, within Ga0059261_0421 at 407.112 kb on - strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.115 kb on + strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.116 kb on - strand, within Ga0059261_0421 at 407.118 kb on - strand, within Ga0059261_0421 at 407.118 kb on - strand, within Ga0059261_0421 at 407.144 kb on - strand, within Ga0059261_0421 at 407.144 kb on - strand, within Ga0059261_0421 at 407.144 kb on - strand, within Ga0059261_0421 at 407.313 kb on + strand, within Ga0059261_0421 at 407.313 kb on + strand, within Ga0059261_0421 at 407.313 kb on + strand, within Ga0059261_0421 at 407.313 kb on + strand, within Ga0059261_0421 at 407.313 kb on + strand, within Ga0059261_0421 at 407.314 kb on - strand, within Ga0059261_0421 at 407.314 kb on - strand, within Ga0059261_0421 at 407.314 kb on - strand, within Ga0059261_0421 at 407.314 kb on - strand, within Ga0059261_0421 at 407.314 kb on - strand, within Ga0059261_0421 at 407.314 kb on - strand, within Ga0059261_0421 at 407.336 kb on + strand, within Ga0059261_0421 at 407.336 kb on + strand, within Ga0059261_0421 at 407.336 kb on + strand, within Ga0059261_0421 at 407.336 kb on + strand, within Ga0059261_0421 at 407.337 kb on - strand, within Ga0059261_0421 at 407.337 kb on - strand, within Ga0059261_0421 at 407.337 kb on - strand, within Ga0059261_0421 at 407.337 kb on - strand, within Ga0059261_0421 at 407.475 kb on + strand, within Ga0059261_0421 at 407.475 kb on + strand, within Ga0059261_0421 at 407.475 kb on + strand, within Ga0059261_0421 at 407.476 kb on - strand, within Ga0059261_0421 at 407.476 kb on - strand, within Ga0059261_0421 at 407.476 kb on - strand, within Ga0059261_0421 at 407.476 kb on - strand, within Ga0059261_0421 at 407.481 kb on - strand, within Ga0059261_0421 at 407.481 kb on - strand, within Ga0059261_0421 at 407.481 kb on - strand at 407.664 kb on - strand at 407.746 kb on + strand at 407.814 kb on + strand at 407.866 kb on + strand at 407.866 kb on + strand at 407.866 kb on + strand at 407.867 kb on - strand at 407.867 kb on - strand at 407.867 kb on - strand at 407.895 kb on + strand at 407.896 kb on - strand at 407.951 kb on + strand at 407.951 kb on + strand at 408.001 kb on + strand at 408.001 kb on + strand at 408.001 kb on + strand at 408.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 405,039 + Ga0059261_0419 0.69 +1.3 405,039 + -0.1 405,039 + Ga0059261_0419 0.69 +0.6 405,040 - Ga0059261_0419 0.69 +0.2 405,040 - Ga0059261_0419 0.69 +0.2 405,040 - Ga0059261_0419 0.69 +0.1 405,042 + Ga0059261_0419 0.69 -0.3 405,042 + Ga0059261_0419 0.69 +0.2 405,042 + Ga0059261_0419 0.69 -1.5 405,042 + Ga0059261_0419 0.69 -0.7 405,042 + Ga0059261_0419 0.69 -0.1 405,042 + Ga0059261_0419 0.69 -0.1 405,043 - Ga0059261_0419 0.69 -0.7 405,043 - Ga0059261_0419 0.69 -0.1 405,043 - Ga0059261_0419 0.69 +0.4 405,043 - Ga0059261_0419 0.69 +0.6 405,043 - Ga0059261_0419 0.69 +0.1 405,043 - Ga0059261_0419 0.69 -1.0 405,043 - Ga0059261_0419 0.69 +0.3 405,043 - Ga0059261_0419 0.69 +0.4 405,043 - Ga0059261_0419 0.69 +1.2 405,043 - Ga0059261_0419 0.69 -0.8 405,048 + Ga0059261_0419 0.70 -0.6 405,122 - Ga0059261_0419 0.72 -0.3 405,210 + Ga0059261_0419 0.75 +0.2 405,211 - Ga0059261_0419 0.75 +0.8 405,211 - Ga0059261_0419 0.75 +0.2 405,211 - Ga0059261_0419 0.75 -0.4 405,493 - Ga0059261_0419 0.85 -0.4 405,718 + +0.3 405,718 + -1.0 405,719 - -0.0 405,719 - +0.7 405,719 - -0.6 405,719 - -0.3 405,719 - -0.4 405,719 - +0.8 405,720 + +0.0 405,720 + -0.1 405,720 + -0.2 405,778 + -0.2 405,778 + -0.8 405,778 + -1.6 405,779 - -0.1 405,842 + -0.7 405,842 + +0.2 405,842 + +1.6 405,842 + +0.1 405,842 + -1.1 405,842 + -0.1 405,842 + -0.2 405,843 - -0.3 405,843 - -0.0 405,843 - +0.1 405,843 - +0.4 405,843 - +0.8 405,843 - +1.5 405,965 + +0.3 405,965 + +0.7 405,965 + +1.8 405,965 + -0.3 405,965 + +0.5 405,965 + -0.0 405,965 + -0.0 405,965 + +0.0 405,965 + -1.3 405,965 + -1.1 405,965 + -0.2 405,965 + -0.2 405,965 + -0.4 405,965 + +1.5 405,965 + -1.6 405,965 + -0.4 405,966 - +0.5 405,966 - -0.1 405,966 - -0.2 405,966 - +0.2 405,966 - +0.9 405,966 - -0.7 405,966 - +0.0 405,966 - -0.2 405,966 - +0.1 405,966 - +0.2 405,966 - +0.9 405,966 - +0.4 405,966 - -0.6 406,005 + +0.4 406,005 + +0.5 406,006 - +0.9 406,020 + -0.2 406,020 + -0.1 406,021 - +0.8 406,021 - +0.6 406,282 + Ga0059261_0420 0.26 +1.3 406,283 - Ga0059261_0420 0.27 +0.4 406,283 - Ga0059261_0420 0.27 -1.3 406,283 - Ga0059261_0420 0.27 -1.1 406,283 - Ga0059261_0420 0.27 -0.4 406,286 + Ga0059261_0420 0.27 +0.5 406,286 + Ga0059261_0420 0.27 +0.9 406,287 - Ga0059261_0420 0.27 -0.1 406,287 - Ga0059261_0420 0.27 +0.8 406,557 + Ga0059261_0420 0.54 -0.8 406,558 - Ga0059261_0420 0.54 +0.1 406,558 - Ga0059261_0420 0.54 -0.3 406,576 + Ga0059261_0420 0.56 -1.3 406,576 + Ga0059261_0420 0.56 +0.5 406,576 + Ga0059261_0420 0.56 +1.4 406,577 - Ga0059261_0420 0.56 +0.3 406,577 - Ga0059261_0420 0.56 +0.4 406,577 - Ga0059261_0420 0.56 +0.8 406,577 - Ga0059261_0420 0.56 +0.6 406,589 + Ga0059261_0420 0.57 -0.4 407,039 + +0.4 407,040 - +0.4 407,040 - -0.3 407,058 + +0.6 407,058 + -0.7 407,058 + +0.3 407,058 + -0.1 407,058 + -0.3 407,058 + -0.7 407,059 - -0.4 407,059 - +0.2 407,111 + Ga0059261_0421 0.16 -0.8 407,111 + -0.4 407,111 + Ga0059261_0421 0.16 -0.2 407,111 + +1.2 407,111 + Ga0059261_0421 0.16 +0.0 407,111 + Ga0059261_0421 0.16 +0.3 407,111 + Ga0059261_0421 0.16 +1.1 407,111 + Ga0059261_0421 0.16 +0.3 407,112 - -1.7 407,112 - Ga0059261_0421 0.16 -0.2 407,112 - Ga0059261_0421 0.16 +0.6 407,112 - Ga0059261_0421 0.16 -0.1 407,112 - Ga0059261_0421 0.16 -0.1 407,112 - Ga0059261_0421 0.16 -0.9 407,112 - Ga0059261_0421 0.16 -0.8 407,112 - Ga0059261_0421 0.16 -0.0 407,112 - Ga0059261_0421 0.16 +0.5 407,115 + Ga0059261_0421 0.17 +0.3 407,115 + Ga0059261_0421 0.17 -0.5 407,115 + Ga0059261_0421 0.17 -1.6 407,115 + Ga0059261_0421 0.17 -0.9 407,115 + Ga0059261_0421 0.17 -0.1 407,115 + Ga0059261_0421 0.17 +0.8 407,115 + Ga0059261_0421 0.17 +0.0 407,115 + Ga0059261_0421 0.17 -0.5 407,115 + Ga0059261_0421 0.17 +0.7 407,115 + Ga0059261_0421 0.17 -1.1 407,115 + Ga0059261_0421 0.17 -0.3 407,115 + Ga0059261_0421 0.17 +0.1 407,115 + Ga0059261_0421 0.17 +0.3 407,115 + Ga0059261_0421 0.17 +0.7 407,115 + Ga0059261_0421 0.17 -1.4 407,115 + Ga0059261_0421 0.17 -0.8 407,115 + Ga0059261_0421 0.17 -0.4 407,115 + Ga0059261_0421 0.17 +0.8 407,115 + Ga0059261_0421 0.17 -0.2 407,115 + Ga0059261_0421 0.17 +0.3 407,115 + Ga0059261_0421 0.17 +2.3 407,116 - Ga0059261_0421 0.17 +0.4 407,116 - Ga0059261_0421 0.17 -0.5 407,116 - Ga0059261_0421 0.17 -0.2 407,116 - Ga0059261_0421 0.17 -0.2 407,116 - Ga0059261_0421 0.17 +0.0 407,116 - Ga0059261_0421 0.17 -0.4 407,116 - -1.7 407,116 - Ga0059261_0421 0.17 +0.5 407,116 - Ga0059261_0421 0.17 +0.3 407,116 - Ga0059261_0421 0.17 +0.1 407,116 - Ga0059261_0421 0.17 +0.0 407,116 - Ga0059261_0421 0.17 -0.3 407,116 - Ga0059261_0421 0.17 -0.1 407,116 - Ga0059261_0421 0.17 +0.3 407,116 - Ga0059261_0421 0.17 -0.6 407,116 - Ga0059261_0421 0.17 -0.9 407,116 - Ga0059261_0421 0.17 +0.6 407,116 - Ga0059261_0421 0.17 -0.2 407,116 - Ga0059261_0421 0.17 +0.3 407,116 - Ga0059261_0421 0.17 -1.5 407,116 - Ga0059261_0421 0.17 +0.8 407,118 - Ga0059261_0421 0.17 +0.0 407,118 - Ga0059261_0421 0.17 +0.2 407,144 - Ga0059261_0421 0.22 -1.2 407,144 - Ga0059261_0421 0.22 +0.2 407,144 - Ga0059261_0421 0.22 +0.1 407,313 + Ga0059261_0421 0.49 +0.9 407,313 + Ga0059261_0421 0.49 -0.3 407,313 + Ga0059261_0421 0.49 +0.4 407,313 + Ga0059261_0421 0.49 -0.1 407,313 + Ga0059261_0421 0.49 +0.6 407,314 - Ga0059261_0421 0.49 -0.3 407,314 - Ga0059261_0421 0.49 +0.1 407,314 - Ga0059261_0421 0.49 -0.3 407,314 - Ga0059261_0421 0.49 +0.8 407,314 - Ga0059261_0421 0.49 -0.4 407,314 - Ga0059261_0421 0.49 +0.7 407,336 + Ga0059261_0421 0.53 +0.6 407,336 + Ga0059261_0421 0.53 -0.3 407,336 + Ga0059261_0421 0.53 -0.5 407,336 + Ga0059261_0421 0.53 +0.9 407,337 - Ga0059261_0421 0.53 +0.5 407,337 - Ga0059261_0421 0.53 -0.0 407,337 - Ga0059261_0421 0.53 +0.9 407,337 - Ga0059261_0421 0.53 +0.6 407,475 + Ga0059261_0421 0.75 -0.2 407,475 + Ga0059261_0421 0.75 -0.7 407,475 + Ga0059261_0421 0.75 +0.1 407,476 - Ga0059261_0421 0.75 +0.1 407,476 - Ga0059261_0421 0.75 +0.2 407,476 - Ga0059261_0421 0.75 -0.7 407,476 - Ga0059261_0421 0.75 -0.1 407,481 - Ga0059261_0421 0.76 -0.4 407,481 - Ga0059261_0421 0.76 +0.4 407,481 - +2.5 407,664 - -0.4 407,746 + +0.1 407,814 + -0.0 407,866 + +1.5 407,866 + +0.0 407,866 + -0.6 407,867 - +0.9 407,867 - +0.5 407,867 - +0.1 407,895 + -0.4 407,896 - -0.7 407,951 + +0.7 407,951 + +0.0 408,001 + -0.1 408,001 + -0.7 408,001 + -0.3 408,002 - -1.7
Or see this region's nucleotide sequence