Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0357

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0355 and Ga0059261_0356 overlap by 4 nucleotidesGa0059261_0356 and Ga0059261_0357 are separated by 20 nucleotidesGa0059261_0357 and Ga0059261_0358 are separated by 37 nucleotides Ga0059261_0355: Ga0059261_0355 - glucokinase, proteobacterial type, at 343,544 to 344,515 _0355 Ga0059261_0356: Ga0059261_0356 - Entner-Doudoroff aldolase, at 344,512 to 345,120 _0356 Ga0059261_0357: Ga0059261_0357 - hypothetical protein, at 345,141 to 345,665 _0357 Ga0059261_0358: Ga0059261_0358 - Alpha/beta hydrolase family, at 345,703 to 346,770 _0358 Position (kb) 345 346Strain fitness (log2 ratio) -1 0 1 2at 344.506 kb on + strandat 345.420 kb on + strand, within Ga0059261_0357at 345.420 kb on + strand, within Ga0059261_0357at 345.420 kb on + strand, within Ga0059261_0357at 345.421 kb on - strand, within Ga0059261_0357at 345.631 kb on + strandat 345.632 kb on - strandat 345.691 kb on + strandat 345.691 kb on + strandat 345.704 kb on + strandat 345.704 kb on + strandat 345.704 kb on + strandat 345.704 kb on + strandat 345.704 kb on + strandat 345.704 kb on + strandat 345.705 kb on - strandat 345.705 kb on - strandat 345.705 kb on - strandat 345.705 kb on - strandat 345.705 kb on - strandat 345.705 kb on - strandat 345.705 kb on - strandat 345.753 kb on + strandat 345.753 kb on + strandat 345.754 kb on - strandat 345.754 kb on - strandat 345.754 kb on - strandat 345.755 kb on + strandat 345.755 kb on + strandat 345.755 kb on + strandat 345.755 kb on + strandat 345.756 kb on - strandat 345.756 kb on - strandat 345.756 kb on - strandat 345.756 kb on - strandat 345.756 kb on - strandat 345.756 kb on - strandat 345.756 kb on - strandat 346.051 kb on - strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.052 kb on + strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.053 kb on - strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.056 kb on + strand, within Ga0059261_0358at 346.057 kb on - strand, within Ga0059261_0358at 346.057 kb on - strand, within Ga0059261_0358at 346.057 kb on - strand, within Ga0059261_0358at 346.057 kb on - strand, within Ga0059261_0358at 346.058 kb on + strand, within Ga0059261_0358at 346.058 kb on + strand, within Ga0059261_0358at 346.058 kb on + strand, within Ga0059261_0358at 346.058 kb on + strand, within Ga0059261_0358at 346.058 kb on + strand, within Ga0059261_0358at 346.058 kb on + strand, within Ga0059261_0358at 346.059 kb on - strand, within Ga0059261_0358at 346.059 kb on - strand, within Ga0059261_0358at 346.059 kb on - strand, within Ga0059261_0358at 346.059 kb on - strand, within Ga0059261_0358at 346.131 kb on + strand, within Ga0059261_0358at 346.131 kb on + strand, within Ga0059261_0358at 346.132 kb on - strand, within Ga0059261_0358at 346.132 kb on - strand, within Ga0059261_0358at 346.133 kb on + strand, within Ga0059261_0358at 346.133 kb on + strand, within Ga0059261_0358at 346.133 kb on + strand, within Ga0059261_0358at 346.133 kb on + strand, within Ga0059261_0358at 346.133 kb on + strand, within Ga0059261_0358at 346.133 kb on + strand, within Ga0059261_0358at 346.133 kb on + strand, within Ga0059261_0358at 346.134 kb on - strand, within Ga0059261_0358at 346.134 kb on - strand, within Ga0059261_0358at 346.134 kb on - strand, within Ga0059261_0358at 346.134 kb on - strand, within Ga0059261_0358at 346.134 kb on - strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strandat 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strandat 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.419 kb on - strand, within Ga0059261_0358at 346.419 kb on - strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.470 kb on - strand, within Ga0059261_0358at 346.470 kb on - strand, within Ga0059261_0358at 346.470 kb on - strand, within Ga0059261_0358at 346.521 kb on - strand, within Ga0059261_0358at 346.521 kb on - strand, within Ga0059261_0358at 346.521 kb on - strand, within Ga0059261_0358at 346.601 kb on + strand, within Ga0059261_0358at 346.601 kb on + strand, within Ga0059261_0358at 346.601 kb on + strand, within Ga0059261_0358at 346.602 kb on - strandat 346.602 kb on - strand, within Ga0059261_0358at 346.602 kb on - strand, within Ga0059261_0358at 346.602 kb on - strand, within Ga0059261_0358at 346.602 kb on - strand, within Ga0059261_0358

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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344,506 + +0.7
345,420 + Ga0059261_0357 0.53 -1.0
345,420 + Ga0059261_0357 0.53 +0.6
345,420 + Ga0059261_0357 0.53 -0.7
345,421 - Ga0059261_0357 0.53 +0.0
345,631 + +0.1
345,632 - +0.9
345,691 + +0.1
345,691 + -0.4
345,704 + -0.4
345,704 + +0.1
345,704 + -0.4
345,704 + +0.4
345,704 + +0.8
345,704 + +0.1
345,705 - +1.1
345,705 - +0.4
345,705 - -0.5
345,705 - -0.3
345,705 - -0.1
345,705 - +1.5
345,705 - -0.4
345,753 + -1.0
345,753 + -0.1
345,754 - +0.3
345,754 - +0.9
345,754 - +0.3
345,755 + -0.3
345,755 + +0.4
345,755 + +0.2
345,755 + -1.1
345,756 - -0.2
345,756 - -0.3
345,756 - +0.6
345,756 - -0.0
345,756 - -0.2
345,756 - -0.9
345,756 - +0.3
346,051 - Ga0059261_0358 0.33 -0.6
346,052 + Ga0059261_0358 0.33 +1.1
346,052 + Ga0059261_0358 0.33 +0.1
346,052 + Ga0059261_0358 0.33 -0.9
346,052 + Ga0059261_0358 0.33 -0.7
346,052 + Ga0059261_0358 0.33 +0.3
346,052 + Ga0059261_0358 0.33 -0.3
346,052 + Ga0059261_0358 0.33 +0.0
346,052 + Ga0059261_0358 0.33 +0.8
346,052 + Ga0059261_0358 0.33 -0.4
346,052 + Ga0059261_0358 0.33 -0.5
346,052 + Ga0059261_0358 0.33 -0.2
346,052 + Ga0059261_0358 0.33 -1.0
346,052 + Ga0059261_0358 0.33 +0.2
346,052 + Ga0059261_0358 0.33 -0.2
346,052 + Ga0059261_0358 0.33 +0.1
346,052 + Ga0059261_0358 0.33 +0.3
346,052 + Ga0059261_0358 0.33 -0.0
346,052 + Ga0059261_0358 0.33 +0.6
346,053 - Ga0059261_0358 0.33 +0.5
346,053 - Ga0059261_0358 0.33 -0.7
346,053 - Ga0059261_0358 0.33 +0.2
346,053 - Ga0059261_0358 0.33 -0.4
346,053 - Ga0059261_0358 0.33 +0.0
346,053 - Ga0059261_0358 0.33 +0.5
346,053 - Ga0059261_0358 0.33 +0.6
346,053 - Ga0059261_0358 0.33 +0.4
346,053 - Ga0059261_0358 0.33 -0.1
346,053 - Ga0059261_0358 0.33 -0.2
346,053 - Ga0059261_0358 0.33 -0.0
346,053 - Ga0059261_0358 0.33 +0.2
346,053 - Ga0059261_0358 0.33 +0.1
346,053 - Ga0059261_0358 0.33 -0.1
346,053 - Ga0059261_0358 0.33 +0.2
346,053 - Ga0059261_0358 0.33 +0.2
346,056 + Ga0059261_0358 0.33 +0.5
346,056 + Ga0059261_0358 0.33 -0.3
346,056 + Ga0059261_0358 0.33 +0.6
346,056 + Ga0059261_0358 0.33 -0.2
346,056 + Ga0059261_0358 0.33 -0.1
346,056 + Ga0059261_0358 0.33 +0.3
346,056 + Ga0059261_0358 0.33 -0.6
346,056 + Ga0059261_0358 0.33 +0.3
346,056 + Ga0059261_0358 0.33 -0.1
346,057 - Ga0059261_0358 0.33 +1.2
346,057 - Ga0059261_0358 0.33 +1.0
346,057 - Ga0059261_0358 0.33 -0.9
346,057 - Ga0059261_0358 0.33 +1.2
346,058 + Ga0059261_0358 0.33 -0.9
346,058 + Ga0059261_0358 0.33 +0.2
346,058 + Ga0059261_0358 0.33 +0.9
346,058 + Ga0059261_0358 0.33 -0.4
346,058 + Ga0059261_0358 0.33 +0.4
346,058 + Ga0059261_0358 0.33 +0.2
346,059 - Ga0059261_0358 0.33 -0.2
346,059 - Ga0059261_0358 0.33 -1.6
346,059 - Ga0059261_0358 0.33 -0.7
346,059 - Ga0059261_0358 0.33 +0.4
346,131 + Ga0059261_0358 0.40 -1.7
346,131 + Ga0059261_0358 0.40 +1.1
346,132 - Ga0059261_0358 0.40 +0.6
346,132 - Ga0059261_0358 0.40 +0.1
346,133 + Ga0059261_0358 0.40 -0.3
346,133 + Ga0059261_0358 0.40 -0.4
346,133 + Ga0059261_0358 0.40 -0.5
346,133 + Ga0059261_0358 0.40 +0.5
346,133 + Ga0059261_0358 0.40 +0.2
346,133 + Ga0059261_0358 0.40 -0.7
346,133 + Ga0059261_0358 0.40 -0.6
346,134 - Ga0059261_0358 0.40 -0.2
346,134 - Ga0059261_0358 0.40 -1.4
346,134 - Ga0059261_0358 0.40 -0.8
346,134 - Ga0059261_0358 0.40 -0.2
346,134 - Ga0059261_0358 0.40 -0.7
346,416 + Ga0059261_0358 0.67 -0.4
346,416 + Ga0059261_0358 0.67 -0.2
346,416 + Ga0059261_0358 0.67 -0.9
346,416 + Ga0059261_0358 0.67 +2.4
346,416 + -0.7
346,416 + Ga0059261_0358 0.67 -0.1
346,416 + Ga0059261_0358 0.67 +0.1
346,416 + +1.9
346,417 - Ga0059261_0358 0.67 -0.3
346,417 - Ga0059261_0358 0.67 +0.1
346,417 - Ga0059261_0358 0.67 -0.2
346,417 - Ga0059261_0358 0.67 -0.9
346,417 - Ga0059261_0358 0.67 +0.4
346,417 - Ga0059261_0358 0.67 -0.3
346,418 + Ga0059261_0358 0.67 -0.2
346,418 + Ga0059261_0358 0.67 +1.0
346,418 + Ga0059261_0358 0.67 -1.3
346,418 + Ga0059261_0358 0.67 -0.3
346,418 + Ga0059261_0358 0.67 +0.2
346,419 - Ga0059261_0358 0.67 -0.3
346,419 - Ga0059261_0358 0.67 -0.1
346,469 + Ga0059261_0358 0.72 -0.6
346,469 + Ga0059261_0358 0.72 -0.1
346,469 + Ga0059261_0358 0.72 +0.0
346,469 + Ga0059261_0358 0.72 -0.8
346,469 + Ga0059261_0358 0.72 +0.1
346,469 + Ga0059261_0358 0.72 +0.2
346,470 - Ga0059261_0358 0.72 -0.8
346,470 - Ga0059261_0358 0.72 +0.5
346,470 - Ga0059261_0358 0.72 +0.6
346,521 - Ga0059261_0358 0.77 +1.0
346,521 - Ga0059261_0358 0.77 -1.0
346,521 - Ga0059261_0358 0.77 -0.4
346,601 + Ga0059261_0358 0.84 -0.4
346,601 + Ga0059261_0358 0.84 +0.0
346,601 + Ga0059261_0358 0.84 +0.4
346,602 - +1.5
346,602 - Ga0059261_0358 0.84 -0.2
346,602 - Ga0059261_0358 0.84 +0.6
346,602 - Ga0059261_0358 0.84 -0.4
346,602 - Ga0059261_0358 0.84 -0.5

Or see this region's nucleotide sequence