Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0319 and Ga0059261_0320 are separated by 189 nucleotides Ga0059261_0320 and Ga0059261_0321 are separated by 81 nucleotides Ga0059261_0321 and Ga0059261_0322 are separated by 3 nucleotides
Ga0059261_0319: Ga0059261_0319 - Uncharacterized protein conserved in bacteria, at 299,231 to 300,463
_0319
Ga0059261_0320: Ga0059261_0320 - Hpt domain, at 300,653 to 300,946
_0320
Ga0059261_0321: Ga0059261_0321 - hypothetical protein, at 301,028 to 303,331
_0321
Ga0059261_0322: Ga0059261_0322 - Beta-lactamase class C and other penicillin binding proteins, at 303,335 to 304,501
_0322
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -2
-1
0
1
2 at 300.083 kb on + strand, within Ga0059261_0319 at 300.083 kb on + strand, within Ga0059261_0319 at 300.084 kb on - strand, within Ga0059261_0319 at 300.084 kb on - strand, within Ga0059261_0319 at 300.101 kb on + strand, within Ga0059261_0319 at 300.102 kb on - strand, within Ga0059261_0319 at 300.102 kb on - strand, within Ga0059261_0319 at 300.173 kb on + strand, within Ga0059261_0319 at 300.173 kb on + strand, within Ga0059261_0319 at 300.173 kb on + strand, within Ga0059261_0319 at 300.174 kb on - strand, within Ga0059261_0319 at 300.174 kb on - strand, within Ga0059261_0319 at 300.174 kb on - strand, within Ga0059261_0319 at 300.174 kb on - strand, within Ga0059261_0319 at 300.185 kb on + strand, within Ga0059261_0319 at 300.185 kb on + strand, within Ga0059261_0319 at 300.185 kb on + strand, within Ga0059261_0319 at 300.185 kb on + strand, within Ga0059261_0319 at 300.185 kb on + strand, within Ga0059261_0319 at 300.185 kb on + strand, within Ga0059261_0319 at 300.185 kb on + strand, within Ga0059261_0319 at 300.185 kb on + strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.186 kb on - strand, within Ga0059261_0319 at 300.187 kb on + strand, within Ga0059261_0319 at 300.187 kb on + strand, within Ga0059261_0319 at 300.187 kb on + strand at 300.187 kb on + strand, within Ga0059261_0319 at 300.187 kb on + strand, within Ga0059261_0319 at 300.187 kb on + strand, within Ga0059261_0319 at 300.187 kb on + strand, within Ga0059261_0319 at 300.188 kb on - strand, within Ga0059261_0319 at 300.188 kb on - strand, within Ga0059261_0319 at 300.188 kb on - strand, within Ga0059261_0319 at 300.188 kb on - strand, within Ga0059261_0319 at 300.188 kb on - strand, within Ga0059261_0319 at 300.188 kb on - strand, within Ga0059261_0319 at 300.188 kb on - strand, within Ga0059261_0319 at 300.308 kb on + strand, within Ga0059261_0319 at 300.308 kb on + strand, within Ga0059261_0319 at 300.309 kb on - strand, within Ga0059261_0319 at 300.309 kb on - strand, within Ga0059261_0319 at 300.309 kb on - strand, within Ga0059261_0319 at 300.356 kb on + strand at 300.356 kb on + strand at 300.357 kb on - strand at 300.357 kb on - strand at 300.357 kb on - strand at 300.357 kb on - strand at 300.404 kb on + strand at 300.404 kb on + strand at 300.405 kb on - strand at 300.405 kb on - strand at 300.405 kb on - strand at 300.405 kb on - strand at 300.405 kb on - strand at 300.405 kb on - strand at 300.615 kb on - strand at 300.654 kb on + strand at 300.654 kb on + strand at 300.654 kb on + strand at 300.655 kb on - strand at 300.655 kb on - strand at 300.939 kb on + strand at 300.939 kb on + strand at 300.939 kb on + strand at 300.939 kb on + strand at 300.939 kb on + strand at 300.939 kb on + strand at 300.939 kb on + strand at 300.940 kb on - strand at 300.940 kb on - strand at 300.940 kb on - strand at 300.940 kb on - strand at 300.940 kb on - strand at 300.940 kb on - strand at 300.958 kb on - strand at 300.971 kb on + strand at 300.992 kb on + strand at 300.993 kb on - strand at 301.016 kb on + strand at 301.016 kb on + strand at 301.016 kb on + strand at 301.017 kb on - strand at 301.017 kb on - strand at 301.081 kb on + strand at 301.082 kb on - strand at 301.131 kb on - strand at 301.131 kb on - strand at 302.221 kb on + strand, within Ga0059261_0321 at 302.869 kb on + strand, within Ga0059261_0321 at 302.887 kb on + strand, within Ga0059261_0321 at 302.888 kb on - strand, within Ga0059261_0321 at 303.152 kb on + strand at 303.153 kb on - strand at 303.153 kb on - strand at 303.153 kb on - strand at 303.192 kb on - strand at 303.192 kb on - strand at 303.291 kb on - strand at 303.291 kb on - strand at 303.336 kb on + strand at 303.337 kb on - strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.387 kb on + strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.388 kb on - strand at 303.492 kb on + strand, within Ga0059261_0322 at 303.492 kb on + strand, within Ga0059261_0322 at 303.493 kb on - strand, within Ga0059261_0322 at 303.495 kb on + strand, within Ga0059261_0322 at 303.495 kb on + strand, within Ga0059261_0322 at 303.496 kb on - strand, within Ga0059261_0322 at 303.496 kb on - strand, within Ga0059261_0322 at 303.496 kb on - strand, within Ga0059261_0322 at 303.522 kb on + strand, within Ga0059261_0322 at 303.523 kb on - strand, within Ga0059261_0322 at 303.523 kb on - strand, within Ga0059261_0322 at 303.523 kb on - strand, within Ga0059261_0322 at 303.528 kb on + strand, within Ga0059261_0322 at 303.747 kb on + strand, within Ga0059261_0322 at 303.748 kb on - strand, within Ga0059261_0322 at 303.816 kb on + strand, within Ga0059261_0322 at 303.817 kb on - strand, within Ga0059261_0322 at 303.817 kb on - strand, within Ga0059261_0322 at 303.817 kb on - strand, within Ga0059261_0322 at 303.817 kb on - strand, within Ga0059261_0322 at 303.817 kb on - strand, within Ga0059261_0322 at 303.862 kb on + strand, within Ga0059261_0322 at 303.862 kb on + strand, within Ga0059261_0322 at 303.862 kb on + strand, within Ga0059261_0322 at 303.862 kb on + strand, within Ga0059261_0322 at 303.862 kb on + strand, within Ga0059261_0322 at 303.862 kb on + strand, within Ga0059261_0322 at 303.862 kb on + strand, within Ga0059261_0322 at 303.863 kb on - strand, within Ga0059261_0322 at 303.863 kb on - strand, within Ga0059261_0322 at 303.863 kb on - strand, within Ga0059261_0322 at 303.864 kb on + strand, within Ga0059261_0322 at 303.864 kb on + strand, within Ga0059261_0322 at 303.864 kb on + strand, within Ga0059261_0322 at 303.864 kb on + strand, within Ga0059261_0322 at 303.865 kb on - strand, within Ga0059261_0322 at 303.865 kb on - strand, within Ga0059261_0322 at 303.865 kb on - strand, within Ga0059261_0322 at 303.865 kb on - strand, within Ga0059261_0322 at 303.865 kb on - strand at 303.865 kb on - strand, within Ga0059261_0322 at 303.865 kb on - strand, within Ga0059261_0322 at 303.865 kb on - strand, within Ga0059261_0322 at 303.865 kb on - strand, within Ga0059261_0322 at 303.937 kb on + strand, within Ga0059261_0322 at 303.937 kb on + strand, within Ga0059261_0322 at 303.937 kb on + strand at 303.938 kb on - strand, within Ga0059261_0322 at 303.938 kb on - strand, within Ga0059261_0322 at 303.938 kb on - strand, within Ga0059261_0322 at 303.938 kb on - strand, within Ga0059261_0322 at 303.939 kb on + strand, within Ga0059261_0322 at 303.939 kb on + strand, within Ga0059261_0322 at 303.939 kb on + strand, within Ga0059261_0322 at 303.939 kb on + strand at 303.939 kb on + strand, within Ga0059261_0322 at 303.939 kb on + strand, within Ga0059261_0322 at 303.940 kb on - strand, within Ga0059261_0322 at 303.940 kb on - strand, within Ga0059261_0322 at 303.940 kb on - strand, within Ga0059261_0322 at 303.940 kb on - strand, within Ga0059261_0322 at 303.940 kb on - strand, within Ga0059261_0322 at 303.940 kb on - strand, within Ga0059261_0322 at 304.003 kb on - strand, within Ga0059261_0322 at 304.003 kb on - strand, within Ga0059261_0322 at 304.029 kb on + strand, within Ga0059261_0322 at 304.029 kb on + strand, within Ga0059261_0322 at 304.029 kb on + strand, within Ga0059261_0322 at 304.029 kb on + strand, within Ga0059261_0322 at 304.029 kb on + strand, within Ga0059261_0322 at 304.029 kb on + strand, within Ga0059261_0322 at 304.029 kb on + strand, within Ga0059261_0322 at 304.029 kb on + strand, within Ga0059261_0322 at 304.030 kb on - strand, within Ga0059261_0322 at 304.030 kb on - strand, within Ga0059261_0322 at 304.030 kb on - strand, within Ga0059261_0322 at 304.030 kb on - strand, within Ga0059261_0322 at 304.030 kb on - strand, within Ga0059261_0322 at 304.030 kb on - strand, within Ga0059261_0322 at 304.030 kb on - strand, within Ga0059261_0322 at 304.060 kb on + strand, within Ga0059261_0322 at 304.060 kb on + strand, within Ga0059261_0322 at 304.060 kb on + strand, within Ga0059261_0322 at 304.060 kb on + strand, within Ga0059261_0322 at 304.060 kb on + strand, within Ga0059261_0322 at 304.061 kb on - strand, within Ga0059261_0322 at 304.061 kb on - strand, within Ga0059261_0322 at 304.061 kb on - strand, within Ga0059261_0322 at 304.061 kb on - strand, within Ga0059261_0322 at 304.062 kb on + strand, within Ga0059261_0322 at 304.062 kb on + strand, within Ga0059261_0322 at 304.063 kb on - strand, within Ga0059261_0322 at 304.063 kb on - strand, within Ga0059261_0322 at 304.146 kb on + strand, within Ga0059261_0322 at 304.158 kb on + strand, within Ga0059261_0322 at 304.158 kb on + strand, within Ga0059261_0322 at 304.158 kb on + strand, within Ga0059261_0322 at 304.196 kb on + strand, within Ga0059261_0322 at 304.196 kb on + strand, within Ga0059261_0322 at 304.196 kb on + strand, within Ga0059261_0322 at 304.196 kb on + strand, within Ga0059261_0322 at 304.196 kb on + strand, within Ga0059261_0322 at 304.197 kb on - strand, within Ga0059261_0322 at 304.197 kb on - strand, within Ga0059261_0322 at 304.261 kb on + strand, within Ga0059261_0322 at 304.261 kb on + strand, within Ga0059261_0322 at 304.304 kb on - strand, within Ga0059261_0322 at 304.304 kb on - strand, within Ga0059261_0322
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 300,083 + Ga0059261_0319 0.69 -0.7 300,083 + Ga0059261_0319 0.69 +0.5 300,084 - Ga0059261_0319 0.69 -0.5 300,084 - Ga0059261_0319 0.69 -0.0 300,101 + Ga0059261_0319 0.71 +0.3 300,102 - Ga0059261_0319 0.71 -0.1 300,102 - Ga0059261_0319 0.71 +0.0 300,173 + Ga0059261_0319 0.76 +0.1 300,173 + Ga0059261_0319 0.76 +0.2 300,173 + Ga0059261_0319 0.76 +0.1 300,174 - Ga0059261_0319 0.76 +0.4 300,174 - Ga0059261_0319 0.76 +0.9 300,174 - Ga0059261_0319 0.76 +0.9 300,174 - Ga0059261_0319 0.76 -0.8 300,185 + Ga0059261_0319 0.77 -0.1 300,185 + Ga0059261_0319 0.77 +0.2 300,185 + Ga0059261_0319 0.77 -0.3 300,185 + Ga0059261_0319 0.77 -1.3 300,185 + Ga0059261_0319 0.77 +0.1 300,185 + Ga0059261_0319 0.77 -0.1 300,185 + Ga0059261_0319 0.77 +0.6 300,185 + Ga0059261_0319 0.77 +0.7 300,186 - Ga0059261_0319 0.77 -0.2 300,186 - Ga0059261_0319 0.77 +0.1 300,186 - Ga0059261_0319 0.77 -1.1 300,186 - Ga0059261_0319 0.77 -0.2 300,186 - Ga0059261_0319 0.77 +0.7 300,186 - Ga0059261_0319 0.77 +0.3 300,186 - Ga0059261_0319 0.77 +0.3 300,186 - Ga0059261_0319 0.77 +0.6 300,186 - Ga0059261_0319 0.77 +0.7 300,187 + Ga0059261_0319 0.78 +0.4 300,187 + Ga0059261_0319 0.78 -0.6 300,187 + +0.2 300,187 + Ga0059261_0319 0.78 -0.6 300,187 + Ga0059261_0319 0.78 +0.3 300,187 + Ga0059261_0319 0.78 +0.5 300,187 + Ga0059261_0319 0.78 -0.2 300,188 - Ga0059261_0319 0.78 +0.4 300,188 - Ga0059261_0319 0.78 -0.4 300,188 - Ga0059261_0319 0.78 -0.6 300,188 - Ga0059261_0319 0.78 -0.3 300,188 - Ga0059261_0319 0.78 -0.0 300,188 - Ga0059261_0319 0.78 +0.1 300,188 - Ga0059261_0319 0.78 -0.0 300,308 + Ga0059261_0319 0.87 +0.1 300,308 + Ga0059261_0319 0.87 +0.6 300,309 - Ga0059261_0319 0.87 +0.1 300,309 - Ga0059261_0319 0.87 -1.7 300,309 - Ga0059261_0319 0.87 -0.3 300,356 + +0.1 300,356 + +1.4 300,357 - +0.9 300,357 - -0.3 300,357 - -0.0 300,357 - -0.7 300,404 + +1.2 300,404 + -0.5 300,405 - +0.8 300,405 - -0.6 300,405 - -0.0 300,405 - +0.5 300,405 - +0.2 300,405 - -0.4 300,615 - +0.7 300,654 + +0.3 300,654 + +0.1 300,654 + -0.3 300,655 - -0.1 300,655 - +0.6 300,939 + +0.7 300,939 + +0.7 300,939 + +1.1 300,939 + -0.0 300,939 + -0.9 300,939 + -0.7 300,939 + -2.4 300,940 - +0.3 300,940 - +0.6 300,940 - -0.7 300,940 - -0.3 300,940 - -0.1 300,940 - +0.3 300,958 - -0.4 300,971 + -0.6 300,992 + +0.2 300,993 - -0.4 301,016 + +0.2 301,016 + -0.5 301,016 + -0.2 301,017 - +0.2 301,017 - -0.7 301,081 + -0.7 301,082 - +0.7 301,131 - +0.9 301,131 - -0.7 302,221 + Ga0059261_0321 0.52 -1.3 302,869 + Ga0059261_0321 0.80 +0.3 302,887 + Ga0059261_0321 0.81 +0.6 302,888 - Ga0059261_0321 0.81 -0.9 303,152 + -0.1 303,153 - +0.2 303,153 - +1.5 303,153 - -0.3 303,192 - -1.2 303,192 - +1.5 303,291 - -0.2 303,291 - +0.2 303,336 + +1.3 303,337 - +0.5 303,387 + +1.2 303,387 + +0.7 303,387 + -0.4 303,387 + -1.3 303,387 + -1.1 303,387 + +0.0 303,387 + +0.9 303,387 + +2.5 303,387 + -0.1 303,387 + +0.9 303,387 + +0.9 303,388 - +0.1 303,388 - +0.9 303,388 - +0.5 303,388 - +0.6 303,388 - -0.3 303,388 - -0.2 303,388 - -0.5 303,388 - -0.1 303,388 - +0.9 303,388 - +0.5 303,388 - -0.3 303,388 - +0.9 303,388 - +0.4 303,388 - +0.7 303,492 + Ga0059261_0322 0.13 -0.3 303,492 + Ga0059261_0322 0.13 -1.5 303,493 - Ga0059261_0322 0.14 -0.2 303,495 + Ga0059261_0322 0.14 -0.3 303,495 + Ga0059261_0322 0.14 -1.9 303,496 - Ga0059261_0322 0.14 +0.2 303,496 - Ga0059261_0322 0.14 +0.6 303,496 - Ga0059261_0322 0.14 -0.5 303,522 + Ga0059261_0322 0.16 -1.3 303,523 - Ga0059261_0322 0.16 +1.0 303,523 - Ga0059261_0322 0.16 -0.4 303,523 - Ga0059261_0322 0.16 -0.6 303,528 + Ga0059261_0322 0.17 -1.7 303,747 + Ga0059261_0322 0.35 +0.7 303,748 - Ga0059261_0322 0.35 -1.4 303,816 + Ga0059261_0322 0.41 +0.5 303,817 - Ga0059261_0322 0.41 -0.5 303,817 - Ga0059261_0322 0.41 +0.0 303,817 - Ga0059261_0322 0.41 +0.4 303,817 - Ga0059261_0322 0.41 +1.7 303,817 - Ga0059261_0322 0.41 -0.6 303,862 + Ga0059261_0322 0.45 -0.9 303,862 + Ga0059261_0322 0.45 +0.0 303,862 + Ga0059261_0322 0.45 +0.2 303,862 + Ga0059261_0322 0.45 -0.3 303,862 + Ga0059261_0322 0.45 -0.6 303,862 + Ga0059261_0322 0.45 -0.6 303,862 + Ga0059261_0322 0.45 -1.5 303,863 - Ga0059261_0322 0.45 -1.1 303,863 - Ga0059261_0322 0.45 -0.0 303,863 - Ga0059261_0322 0.45 +0.4 303,864 + Ga0059261_0322 0.45 -0.2 303,864 + Ga0059261_0322 0.45 -0.2 303,864 + Ga0059261_0322 0.45 +0.9 303,864 + Ga0059261_0322 0.45 +0.5 303,865 - Ga0059261_0322 0.45 -0.6 303,865 - Ga0059261_0322 0.45 +0.5 303,865 - Ga0059261_0322 0.45 -1.4 303,865 - Ga0059261_0322 0.45 +0.1 303,865 - +0.9 303,865 - Ga0059261_0322 0.45 -0.2 303,865 - Ga0059261_0322 0.45 +0.7 303,865 - Ga0059261_0322 0.45 +0.6 303,865 - Ga0059261_0322 0.45 +0.4 303,937 + Ga0059261_0322 0.52 -0.1 303,937 + Ga0059261_0322 0.52 -0.1 303,937 + -0.1 303,938 - Ga0059261_0322 0.52 -0.0 303,938 - Ga0059261_0322 0.52 +0.4 303,938 - Ga0059261_0322 0.52 -1.1 303,938 - Ga0059261_0322 0.52 +0.6 303,939 + Ga0059261_0322 0.52 +0.5 303,939 + Ga0059261_0322 0.52 -0.4 303,939 + Ga0059261_0322 0.52 +0.7 303,939 + +0.9 303,939 + Ga0059261_0322 0.52 -0.2 303,939 + Ga0059261_0322 0.52 +0.8 303,940 - Ga0059261_0322 0.52 -0.1 303,940 - Ga0059261_0322 0.52 -0.3 303,940 - Ga0059261_0322 0.52 +0.3 303,940 - Ga0059261_0322 0.52 -0.5 303,940 - Ga0059261_0322 0.52 -1.1 303,940 - Ga0059261_0322 0.52 -0.8 304,003 - Ga0059261_0322 0.57 -1.2 304,003 - Ga0059261_0322 0.57 +0.5 304,029 + Ga0059261_0322 0.59 -0.0 304,029 + Ga0059261_0322 0.59 -0.0 304,029 + Ga0059261_0322 0.59 +0.4 304,029 + Ga0059261_0322 0.59 -0.3 304,029 + Ga0059261_0322 0.59 -0.3 304,029 + Ga0059261_0322 0.59 -0.1 304,029 + Ga0059261_0322 0.59 +0.6 304,029 + Ga0059261_0322 0.59 +0.2 304,030 - Ga0059261_0322 0.60 +0.1 304,030 - Ga0059261_0322 0.60 +2.5 304,030 - Ga0059261_0322 0.60 +0.0 304,030 - Ga0059261_0322 0.60 +0.5 304,030 - Ga0059261_0322 0.60 +0.6 304,030 - Ga0059261_0322 0.60 +0.1 304,030 - Ga0059261_0322 0.60 -0.2 304,060 + Ga0059261_0322 0.62 -0.7 304,060 + Ga0059261_0322 0.62 +0.6 304,060 + Ga0059261_0322 0.62 +1.4 304,060 + Ga0059261_0322 0.62 -0.4 304,060 + Ga0059261_0322 0.62 -0.6 304,061 - Ga0059261_0322 0.62 -0.1 304,061 - Ga0059261_0322 0.62 +0.2 304,061 - Ga0059261_0322 0.62 -0.8 304,061 - Ga0059261_0322 0.62 +1.8 304,062 + Ga0059261_0322 0.62 +0.1 304,062 + Ga0059261_0322 0.62 -1.4 304,063 - Ga0059261_0322 0.62 +0.1 304,063 - Ga0059261_0322 0.62 -0.1 304,146 + Ga0059261_0322 0.69 -0.3 304,158 + Ga0059261_0322 0.71 +0.9 304,158 + Ga0059261_0322 0.71 -0.1 304,158 + Ga0059261_0322 0.71 +0.2 304,196 + Ga0059261_0322 0.74 +0.1 304,196 + Ga0059261_0322 0.74 +0.6 304,196 + Ga0059261_0322 0.74 +0.8 304,196 + Ga0059261_0322 0.74 +0.6 304,196 + Ga0059261_0322 0.74 -0.9 304,197 - Ga0059261_0322 0.74 +0.3 304,197 - Ga0059261_0322 0.74 +0.7 304,261 + Ga0059261_0322 0.79 +1.0 304,261 + Ga0059261_0322 0.79 -0.0 304,304 - Ga0059261_0322 0.83 -0.4 304,304 - Ga0059261_0322 0.83 -1.0
Or see this region's nucleotide sequence