Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0266

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0264 and Ga0059261_0265 overlap by 4 nucleotidesGa0059261_0265 and Ga0059261_0266 are separated by 201 nucleotidesGa0059261_0266 and Ga0059261_0267 are separated by 73 nucleotidesGa0059261_0267 and Ga0059261_0268 are separated by 112 nucleotides Ga0059261_0264: Ga0059261_0264 - HAD superfamily, subfamily IIIB (Acid phosphatase), at 253,924 to 254,916 _0264 Ga0059261_0265: Ga0059261_0265 - 3-oxoacid CoA-transferase, A subunit, at 254,913 to 255,620 _0265 Ga0059261_0266: Ga0059261_0266 - hypothetical protein, at 255,822 to 256,046 _0266 Ga0059261_0267: Ga0059261_0267 - Predicted membrane protein, at 256,120 to 256,389 _0267 Ga0059261_0268: Ga0059261_0268 - Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily, at 256,502 to 257,026 _0268 Position (kb) 255 256 257Strain fitness (log2 ratio) -2 -1 0 1 2at 254.963 kb on - strandat 254.963 kb on - strandat 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.992 kb on + strand, within Ga0059261_0265at 254.993 kb on - strandat 254.993 kb on - strand, within Ga0059261_0265at 254.993 kb on - strand, within Ga0059261_0265at 254.993 kb on - strand, within Ga0059261_0265at 254.993 kb on - strand, within Ga0059261_0265at 254.993 kb on - strand, within Ga0059261_0265at 254.993 kb on - strand, within Ga0059261_0265at 254.993 kb on - strand, within Ga0059261_0265at 254.993 kb on - strand, within Ga0059261_0265at 254.993 kb on - strand, within Ga0059261_0265at 255.189 kb on + strand, within Ga0059261_0265at 255.189 kb on + strand, within Ga0059261_0265at 255.189 kb on + strand, within Ga0059261_0265at 255.189 kb on + strand, within Ga0059261_0265at 255.189 kb on + strand, within Ga0059261_0265at 255.190 kb on - strand, within Ga0059261_0265at 255.190 kb on - strand, within Ga0059261_0265at 255.190 kb on - strand, within Ga0059261_0265at 255.190 kb on - strand, within Ga0059261_0265at 255.190 kb on - strand, within Ga0059261_0265at 255.190 kb on - strand, within Ga0059261_0265at 255.194 kb on + strand, within Ga0059261_0265at 255.194 kb on + strand, within Ga0059261_0265at 255.194 kb on + strand, within Ga0059261_0265at 255.194 kb on + strand, within Ga0059261_0265at 255.195 kb on - strand, within Ga0059261_0265at 255.195 kb on - strand, within Ga0059261_0265at 255.195 kb on - strand, within Ga0059261_0265at 255.195 kb on - strand, within Ga0059261_0265at 255.195 kb on - strand, within Ga0059261_0265at 255.196 kb on + strand, within Ga0059261_0265at 255.196 kb on + strand, within Ga0059261_0265at 255.196 kb on + strand, within Ga0059261_0265at 255.196 kb on + strand, within Ga0059261_0265at 255.196 kb on + strand, within Ga0059261_0265at 255.196 kb on + strand, within Ga0059261_0265at 255.196 kb on + strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.197 kb on - strand, within Ga0059261_0265at 255.265 kb on + strand, within Ga0059261_0265at 255.266 kb on - strand, within Ga0059261_0265at 255.266 kb on - strandat 255.266 kb on - strand, within Ga0059261_0265at 255.355 kb on + strand, within Ga0059261_0265at 255.355 kb on + strand, within Ga0059261_0265at 255.355 kb on + strand, within Ga0059261_0265at 255.355 kb on + strand, within Ga0059261_0265at 255.356 kb on - strand, within Ga0059261_0265at 255.356 kb on - strand, within Ga0059261_0265at 255.356 kb on - strand, within Ga0059261_0265at 255.356 kb on - strand, within Ga0059261_0265at 255.388 kb on + strand, within Ga0059261_0265at 255.388 kb on + strand, within Ga0059261_0265at 255.388 kb on + strand, within Ga0059261_0265at 255.388 kb on + strand, within Ga0059261_0265at 255.388 kb on + strand, within Ga0059261_0265at 255.388 kb on + strand, within Ga0059261_0265at 255.388 kb on + strand, within Ga0059261_0265at 255.389 kb on - strand, within Ga0059261_0265at 255.389 kb on - strand, within Ga0059261_0265at 255.389 kb on - strand, within Ga0059261_0265at 255.389 kb on - strand, within Ga0059261_0265at 255.389 kb on - strand, within Ga0059261_0265at 255.389 kb on - strand, within Ga0059261_0265at 255.479 kb on + strand, within Ga0059261_0265at 255.479 kb on + strand, within Ga0059261_0265at 255.479 kb on + strand, within Ga0059261_0265at 255.479 kb on + strand, within Ga0059261_0265at 255.479 kb on + strandat 255.479 kb on + strand, within Ga0059261_0265at 255.479 kb on + strand, within Ga0059261_0265at 255.479 kb on + strand, within Ga0059261_0265at 255.480 kb on - strand, within Ga0059261_0265at 255.480 kb on - strand, within Ga0059261_0265at 255.480 kb on - strand, within Ga0059261_0265at 255.560 kb on + strandat 255.560 kb on + strandat 255.560 kb on + strandat 255.561 kb on - strandat 255.561 kb on - strandat 255.561 kb on - strandat 255.561 kb on - strandat 255.607 kb on + strandat 255.607 kb on + strandat 255.607 kb on + strandat 255.608 kb on - strandat 255.608 kb on - strandat 255.608 kb on - strandat 255.787 kb on + strandat 255.787 kb on + strandat 255.792 kb on + strandat 255.846 kb on + strand, within Ga0059261_0266at 255.846 kb on + strand, within Ga0059261_0266at 255.846 kb on + strand, within Ga0059261_0266at 256.024 kb on + strandat 256.024 kb on + strandat 256.024 kb on + strandat 256.025 kb on - strandat 256.025 kb on - strandat 256.025 kb on - strandat 256.025 kb on - strandat 256.025 kb on - strandat 256.044 kb on + strandat 256.301 kb on + strand, within Ga0059261_0267at 256.372 kb on + strandat 256.372 kb on + strandat 256.373 kb on - strandat 256.435 kb on + strandat 256.435 kb on + strandat 256.435 kb on + strandat 256.436 kb on - strandat 256.436 kb on - strandat 256.436 kb on - strandat 256.436 kb on - strandat 256.436 kb on - strandat 256.436 kb on - strandat 256.436 kb on - strandat 256.437 kb on + strandat 256.437 kb on + strandat 256.437 kb on + strandat 256.437 kb on + strandat 256.437 kb on + strandat 256.437 kb on + strandat 256.438 kb on - strandat 256.438 kb on - strandat 256.438 kb on - strandat 256.438 kb on - strandat 256.438 kb on - strandat 256.438 kb on - strandat 256.512 kb on - strandat 256.940 kb on - strand, within Ga0059261_0268at 256.972 kb on + strand, within Ga0059261_0268at 256.972 kb on + strand, within Ga0059261_0268at 256.972 kb on + strand, within Ga0059261_0268at 256.972 kb on + strand, within Ga0059261_0268at 256.973 kb on - strand, within Ga0059261_0268at 256.973 kb on - strand, within Ga0059261_0268at 256.973 kb on - strand, within Ga0059261_0268at 256.973 kb on - strand, within Ga0059261_0268at 256.973 kb on - strand, within Ga0059261_0268at 256.973 kb on - strand, within Ga0059261_0268at 256.973 kb on - strand, within Ga0059261_0268at 256.976 kb on + strandat 256.976 kb on + strandat 256.976 kb on + strandat 256.976 kb on + strandat 256.976 kb on + strandat 256.976 kb on + strandat 256.976 kb on + strandat 256.976 kb on + strandat 256.976 kb on + strandat 256.976 kb on + strandat 256.977 kb on - strandat 256.977 kb on - strandat 256.977 kb on - strandat 256.977 kb on - strandat 256.977 kb on - strandat 256.977 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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254,963 - +1.2
254,963 - +0.6
254,992 + Ga0059261_0265 0.11 -1.1
254,992 + Ga0059261_0265 0.11 -0.1
254,992 + Ga0059261_0265 0.11 +2.5
254,992 + Ga0059261_0265 0.11 -0.3
254,992 + Ga0059261_0265 0.11 -0.7
254,992 + Ga0059261_0265 0.11 +0.3
254,992 + Ga0059261_0265 0.11 -0.1
254,992 + Ga0059261_0265 0.11 -0.8
254,992 + Ga0059261_0265 0.11 -0.5
254,992 + Ga0059261_0265 0.11 -0.6
254,993 - -0.1
254,993 - Ga0059261_0265 0.11 +0.3
254,993 - Ga0059261_0265 0.11 +0.5
254,993 - Ga0059261_0265 0.11 +0.1
254,993 - Ga0059261_0265 0.11 +0.5
254,993 - Ga0059261_0265 0.11 +1.1
254,993 - Ga0059261_0265 0.11 -1.1
254,993 - Ga0059261_0265 0.11 +0.4
254,993 - Ga0059261_0265 0.11 +0.5
254,993 - Ga0059261_0265 0.11 -0.3
255,189 + Ga0059261_0265 0.39 -0.5
255,189 + Ga0059261_0265 0.39 -0.5
255,189 + Ga0059261_0265 0.39 +0.3
255,189 + Ga0059261_0265 0.39 +0.3
255,189 + Ga0059261_0265 0.39 -0.6
255,190 - Ga0059261_0265 0.39 +0.2
255,190 - Ga0059261_0265 0.39 +1.4
255,190 - Ga0059261_0265 0.39 +0.4
255,190 - Ga0059261_0265 0.39 -2.3
255,190 - Ga0059261_0265 0.39 +0.4
255,190 - Ga0059261_0265 0.39 +0.3
255,194 + Ga0059261_0265 0.40 -0.9
255,194 + Ga0059261_0265 0.40 -0.3
255,194 + Ga0059261_0265 0.40 +0.4
255,194 + Ga0059261_0265 0.40 +0.8
255,195 - Ga0059261_0265 0.40 +0.7
255,195 - Ga0059261_0265 0.40 +0.3
255,195 - Ga0059261_0265 0.40 +0.5
255,195 - Ga0059261_0265 0.40 +0.0
255,195 - Ga0059261_0265 0.40 -0.4
255,196 + Ga0059261_0265 0.40 -0.1
255,196 + Ga0059261_0265 0.40 +0.7
255,196 + Ga0059261_0265 0.40 -0.7
255,196 + Ga0059261_0265 0.40 -0.1
255,196 + Ga0059261_0265 0.40 +1.0
255,196 + Ga0059261_0265 0.40 -0.7
255,196 + Ga0059261_0265 0.40 -0.5
255,197 - Ga0059261_0265 0.40 +0.5
255,197 - Ga0059261_0265 0.40 +0.3
255,197 - Ga0059261_0265 0.40 +0.4
255,197 - Ga0059261_0265 0.40 +0.4
255,197 - Ga0059261_0265 0.40 +0.0
255,197 - Ga0059261_0265 0.40 +0.2
255,197 - Ga0059261_0265 0.40 -1.4
255,197 - Ga0059261_0265 0.40 -0.0
255,197 - Ga0059261_0265 0.40 +0.7
255,197 - Ga0059261_0265 0.40 -0.4
255,265 + Ga0059261_0265 0.50 +0.5
255,266 - Ga0059261_0265 0.50 +1.0
255,266 - +0.9
255,266 - Ga0059261_0265 0.50 +0.1
255,355 + Ga0059261_0265 0.62 -0.1
255,355 + Ga0059261_0265 0.62 -0.6
255,355 + Ga0059261_0265 0.62 -0.6
255,355 + Ga0059261_0265 0.62 +0.1
255,356 - Ga0059261_0265 0.63 +0.1
255,356 - Ga0059261_0265 0.63 -0.2
255,356 - Ga0059261_0265 0.63 +0.8
255,356 - Ga0059261_0265 0.63 -2.0
255,388 + Ga0059261_0265 0.67 +0.0
255,388 + Ga0059261_0265 0.67 -0.2
255,388 + Ga0059261_0265 0.67 -0.4
255,388 + Ga0059261_0265 0.67 -0.1
255,388 + Ga0059261_0265 0.67 -0.4
255,388 + Ga0059261_0265 0.67 +0.8
255,388 + Ga0059261_0265 0.67 +0.0
255,389 - Ga0059261_0265 0.67 +0.1
255,389 - Ga0059261_0265 0.67 -0.2
255,389 - Ga0059261_0265 0.67 +0.2
255,389 - Ga0059261_0265 0.67 +0.3
255,389 - Ga0059261_0265 0.67 +0.8
255,389 - Ga0059261_0265 0.67 +0.0
255,479 + Ga0059261_0265 0.80 -0.1
255,479 + Ga0059261_0265 0.80 +0.6
255,479 + Ga0059261_0265 0.80 +1.6
255,479 + Ga0059261_0265 0.80 -0.2
255,479 + +1.9
255,479 + Ga0059261_0265 0.80 -0.3
255,479 + Ga0059261_0265 0.80 -0.6
255,479 + Ga0059261_0265 0.80 +0.6
255,480 - Ga0059261_0265 0.80 -0.2
255,480 - Ga0059261_0265 0.80 +0.3
255,480 - Ga0059261_0265 0.80 +0.3
255,560 + +0.8
255,560 + +1.1
255,560 + -2.2
255,561 - +0.0
255,561 - +0.1
255,561 - -2.1
255,561 - +1.1
255,607 + -0.8
255,607 + -0.1
255,607 + +0.2
255,608 - -0.2
255,608 - -0.3
255,608 - +0.5
255,787 + -0.5
255,787 + -0.7
255,792 + +0.1
255,846 + Ga0059261_0266 0.11 +0.8
255,846 + Ga0059261_0266 0.11 -2.1
255,846 + Ga0059261_0266 0.11 -1.2
256,024 + -0.3
256,024 + -1.7
256,024 + +0.1
256,025 - +0.2
256,025 - +1.4
256,025 - +0.4
256,025 - -0.4
256,025 - -0.1
256,044 + -0.3
256,301 + Ga0059261_0267 0.67 +0.3
256,372 + +0.4
256,372 + -0.1
256,373 - +0.6
256,435 + -0.4
256,435 + +0.2
256,435 + +2.1
256,436 - -1.1
256,436 - +0.5
256,436 - +1.7
256,436 - -0.1
256,436 - +0.9
256,436 - +0.8
256,436 - -0.6
256,437 + -0.7
256,437 + +0.2
256,437 + +0.5
256,437 + +0.2
256,437 + -0.5
256,437 + +0.5
256,438 - -0.7
256,438 - +0.5
256,438 - +0.5
256,438 - -0.2
256,438 - +0.9
256,438 - -0.3
256,512 - +0.2
256,940 - Ga0059261_0268 0.83 +0.0
256,972 + Ga0059261_0268 0.90 -0.2
256,972 + Ga0059261_0268 0.90 -2.3
256,972 + Ga0059261_0268 0.90 -0.1
256,972 + Ga0059261_0268 0.90 -1.4
256,973 - Ga0059261_0268 0.90 -0.7
256,973 - Ga0059261_0268 0.90 +0.7
256,973 - Ga0059261_0268 0.90 +1.0
256,973 - Ga0059261_0268 0.90 -0.1
256,973 - Ga0059261_0268 0.90 +1.8
256,973 - Ga0059261_0268 0.90 -0.6
256,973 - Ga0059261_0268 0.90 +0.6
256,976 + -0.0
256,976 + -0.3
256,976 + -0.1
256,976 + +0.6
256,976 + +0.4
256,976 + +0.5
256,976 + -0.0
256,976 + +1.9
256,976 + +0.2
256,976 + -1.0
256,977 - -0.4
256,977 - -0.9
256,977 - +0.7
256,977 - +0.3
256,977 - +1.3
256,977 - +1.4

Or see this region's nucleotide sequence