Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0248

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0247 and Ga0059261_0248 are separated by 36 nucleotidesGa0059261_0248 and Ga0059261_0249 are separated by 41 nucleotides Ga0059261_0247: Ga0059261_0247 - Arabinose efflux permease, at 236,906 to 238,168 _0247 Ga0059261_0248: Ga0059261_0248 - hypothetical protein, at 238,205 to 238,498 _0248 Ga0059261_0249: Ga0059261_0249 - Superfamily I DNA and RNA helicases, at 238,540 to 240,876 _0249 Position (kb) 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 237.273 kb on + strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.273 kb on + strand, within Ga0059261_0247at 237.274 kb on - strand, within Ga0059261_0247at 237.274 kb on - strand, within Ga0059261_0247at 237.274 kb on - strand, within Ga0059261_0247at 237.274 kb on - strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.303 kb on + strand, within Ga0059261_0247at 237.304 kb on - strand, within Ga0059261_0247at 237.304 kb on - strand, within Ga0059261_0247at 237.412 kb on + strand, within Ga0059261_0247at 237.412 kb on + strand, within Ga0059261_0247at 237.412 kb on + strand, within Ga0059261_0247at 237.412 kb on + strand, within Ga0059261_0247at 237.413 kb on - strand, within Ga0059261_0247at 237.413 kb on - strand, within Ga0059261_0247at 237.413 kb on - strandat 237.413 kb on - strand, within Ga0059261_0247at 237.413 kb on - strand, within Ga0059261_0247at 237.413 kb on - strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.414 kb on + strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.415 kb on - strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strandat 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strand, within Ga0059261_0247at 237.417 kb on + strandat 237.417 kb on + strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.418 kb on - strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.859 kb on - strand, within Ga0059261_0247at 237.859 kb on - strand, within Ga0059261_0247at 237.948 kb on + strand, within Ga0059261_0247at 237.948 kb on + strand, within Ga0059261_0247at 238.008 kb on + strand, within Ga0059261_0247at 238.008 kb on + strand, within Ga0059261_0247at 238.009 kb on - strand, within Ga0059261_0247at 238.083 kb on + strandat 238.083 kb on + strandat 238.083 kb on + strandat 238.083 kb on + strandat 238.084 kb on - strandat 238.084 kb on - strandat 238.089 kb on + strandat 238.089 kb on + strandat 238.089 kb on + strandat 238.090 kb on - strandat 238.090 kb on - strandat 238.099 kb on - strandat 238.341 kb on + strandat 238.341 kb on + strand, within Ga0059261_0248at 238.341 kb on + strand, within Ga0059261_0248at 238.341 kb on + strand, within Ga0059261_0248at 238.341 kb on + strandat 238.342 kb on - strand, within Ga0059261_0248at 238.342 kb on - strand, within Ga0059261_0248at 238.342 kb on - strand, within Ga0059261_0248at 238.717 kb on + strandat 239.089 kb on + strand, within Ga0059261_0249at 239.098 kb on + strand, within Ga0059261_0249at 239.098 kb on + strand, within Ga0059261_0249at 239.198 kb on - strand, within Ga0059261_0249at 239.233 kb on + strand, within Ga0059261_0249at 239.234 kb on - strand, within Ga0059261_0249at 239.234 kb on - strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.258 kb on - strand, within Ga0059261_0249at 239.258 kb on - strand, within Ga0059261_0249at 239.329 kb on + strand, within Ga0059261_0249at 239.330 kb on - strand, within Ga0059261_0249at 239.330 kb on - strand, within Ga0059261_0249at 239.359 kb on - strand, within Ga0059261_0249at 239.359 kb on - strand, within Ga0059261_0249at 239.359 kb on - strand, within Ga0059261_0249at 239.359 kb on - strand, within Ga0059261_0249at 239.417 kb on - strand, within Ga0059261_0249at 239.417 kb on - strand, within Ga0059261_0249

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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237,273 + Ga0059261_0247 0.29 +0.2
237,273 + Ga0059261_0247 0.29 -0.3
237,273 + Ga0059261_0247 0.29 +0.7
237,273 + Ga0059261_0247 0.29 +0.1
237,273 + Ga0059261_0247 0.29 +0.4
237,274 - Ga0059261_0247 0.29 +0.1
237,274 - Ga0059261_0247 0.29 -1.1
237,274 - Ga0059261_0247 0.29 -0.7
237,274 - Ga0059261_0247 0.29 -0.1
237,303 + Ga0059261_0247 0.31 +1.3
237,303 + Ga0059261_0247 0.31 -0.3
237,303 + Ga0059261_0247 0.31 +0.1
237,303 + Ga0059261_0247 0.31 +2.5
237,303 + Ga0059261_0247 0.31 +0.4
237,303 + Ga0059261_0247 0.31 +0.5
237,303 + Ga0059261_0247 0.31 +0.3
237,303 + Ga0059261_0247 0.31 +1.3
237,304 - Ga0059261_0247 0.32 -1.9
237,304 - Ga0059261_0247 0.32 +0.2
237,412 + Ga0059261_0247 0.40 +0.9
237,412 + Ga0059261_0247 0.40 +0.4
237,412 + Ga0059261_0247 0.40 -0.5
237,412 + Ga0059261_0247 0.40 -0.2
237,413 - Ga0059261_0247 0.40 +0.9
237,413 - Ga0059261_0247 0.40 -0.5
237,413 - -0.7
237,413 - Ga0059261_0247 0.40 -0.0
237,413 - Ga0059261_0247 0.40 +0.5
237,413 - Ga0059261_0247 0.40 +0.7
237,414 + Ga0059261_0247 0.40 +0.4
237,414 + Ga0059261_0247 0.40 -0.8
237,414 + Ga0059261_0247 0.40 -0.5
237,414 + Ga0059261_0247 0.40 -1.2
237,414 + Ga0059261_0247 0.40 +0.0
237,414 + Ga0059261_0247 0.40 +0.4
237,414 + Ga0059261_0247 0.40 +0.1
237,414 + Ga0059261_0247 0.40 +0.6
237,415 - Ga0059261_0247 0.40 +0.2
237,415 - Ga0059261_0247 0.40 +0.8
237,415 - Ga0059261_0247 0.40 +0.9
237,415 - Ga0059261_0247 0.40 -0.2
237,415 - Ga0059261_0247 0.40 -0.5
237,417 + Ga0059261_0247 0.40 +0.5
237,417 + Ga0059261_0247 0.40 +0.1
237,417 + Ga0059261_0247 0.40 +0.6
237,417 + +0.5
237,417 + Ga0059261_0247 0.40 +0.5
237,417 + Ga0059261_0247 0.40 +0.1
237,417 + Ga0059261_0247 0.40 -0.4
237,417 + Ga0059261_0247 0.40 +1.4
237,417 + Ga0059261_0247 0.40 -0.0
237,417 + -1.1
237,417 + Ga0059261_0247 0.40 +1.2
237,418 - Ga0059261_0247 0.41 -0.2
237,418 - Ga0059261_0247 0.41 +1.2
237,418 - Ga0059261_0247 0.41 +0.3
237,418 - Ga0059261_0247 0.41 -0.6
237,418 - Ga0059261_0247 0.41 +0.0
237,418 - Ga0059261_0247 0.41 -0.2
237,418 - Ga0059261_0247 0.41 +0.8
237,418 - Ga0059261_0247 0.41 -0.6
237,418 - Ga0059261_0247 0.41 -0.4
237,418 - Ga0059261_0247 0.41 -0.7
237,418 - Ga0059261_0247 0.41 -0.2
237,418 - Ga0059261_0247 0.41 -0.6
237,418 - Ga0059261_0247 0.41 +0.0
237,418 - Ga0059261_0247 0.41 +1.0
237,418 - Ga0059261_0247 0.41 +0.4
237,418 - Ga0059261_0247 0.41 -0.2
237,418 - Ga0059261_0247 0.41 +0.7
237,418 - Ga0059261_0247 0.41 +0.4
237,418 - Ga0059261_0247 0.41 -0.1
237,858 + Ga0059261_0247 0.75 +1.4
237,858 + Ga0059261_0247 0.75 +0.0
237,858 + Ga0059261_0247 0.75 -1.2
237,858 + Ga0059261_0247 0.75 -0.8
237,858 + Ga0059261_0247 0.75 -1.2
237,858 + Ga0059261_0247 0.75 +0.7
237,858 + Ga0059261_0247 0.75 +0.3
237,859 - Ga0059261_0247 0.75 +0.0
237,859 - Ga0059261_0247 0.75 -0.5
237,948 + Ga0059261_0247 0.83 -0.9
237,948 + Ga0059261_0247 0.83 -0.3
238,008 + Ga0059261_0247 0.87 +0.6
238,008 + Ga0059261_0247 0.87 -0.6
238,009 - Ga0059261_0247 0.87 +1.0
238,083 + +0.9
238,083 + +0.2
238,083 + -1.7
238,083 + -0.8
238,084 - +0.1
238,084 - -0.8
238,089 + +0.1
238,089 + -0.4
238,089 + +0.1
238,090 - +0.3
238,090 - -1.3
238,099 - +0.9
238,341 + +0.3
238,341 + Ga0059261_0248 0.46 -0.1
238,341 + Ga0059261_0248 0.46 -0.7
238,341 + Ga0059261_0248 0.46 -0.2
238,341 + -0.1
238,342 - Ga0059261_0248 0.47 +0.1
238,342 - Ga0059261_0248 0.47 -0.2
238,342 - Ga0059261_0248 0.47 -0.7
238,717 + +0.4
239,089 + Ga0059261_0249 0.23 +0.9
239,098 + Ga0059261_0249 0.24 +0.2
239,098 + Ga0059261_0249 0.24 +0.9
239,198 - Ga0059261_0249 0.28 +0.1
239,233 + Ga0059261_0249 0.30 +1.3
239,234 - Ga0059261_0249 0.30 +0.7
239,234 - Ga0059261_0249 0.30 +0.6
239,257 + Ga0059261_0249 0.31 +0.9
239,257 + Ga0059261_0249 0.31 -0.1
239,257 + Ga0059261_0249 0.31 -0.1
239,257 + Ga0059261_0249 0.31 +0.1
239,257 + Ga0059261_0249 0.31 -0.1
239,258 - Ga0059261_0249 0.31 +0.2
239,258 - Ga0059261_0249 0.31 +1.0
239,329 + Ga0059261_0249 0.34 +0.2
239,330 - Ga0059261_0249 0.34 +0.1
239,330 - Ga0059261_0249 0.34 +0.3
239,359 - Ga0059261_0249 0.35 -0.3
239,359 - Ga0059261_0249 0.35 -0.6
239,359 - Ga0059261_0249 0.35 -0.4
239,359 - Ga0059261_0249 0.35 +1.2
239,417 - Ga0059261_0249 0.38 +0.1
239,417 - Ga0059261_0249 0.38 +0.3

Or see this region's nucleotide sequence