Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0227

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0225 and Ga0059261_0226 are separated by 9 nucleotidesGa0059261_0226 and Ga0059261_0227 overlap by 4 nucleotidesGa0059261_0227 and Ga0059261_0228 are separated by 62 nucleotides Ga0059261_0225: Ga0059261_0225 - polyphosphate kinase 1, at 214,871 to 217,045 _0225 Ga0059261_0226: Ga0059261_0226 - Bacterial dnaA protein, at 217,055 to 217,678 _0226 Ga0059261_0227: Ga0059261_0227 - hypothetical protein, at 217,675 to 218,949 _0227 Ga0059261_0228: Ga0059261_0228 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 219,012 to 220,106 _0228 Position (kb) 217 218 219Strain fitness (log2 ratio) -1 0 1 2at 216.975 kb on + strandat 216.976 kb on - strandat 216.976 kb on - strandat 218.115 kb on - strand, within Ga0059261_0227at 218.115 kb on - strandat 218.115 kb on - strand, within Ga0059261_0227at 218.406 kb on - strand, within Ga0059261_0227at 218.406 kb on - strand, within Ga0059261_0227at 218.938 kb on - strandat 218.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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216,975 + -0.1
216,976 - +1.9
216,976 - -0.2
218,115 - Ga0059261_0227 0.35 -0.6
218,115 - -0.7
218,115 - Ga0059261_0227 0.35 -0.7
218,406 - Ga0059261_0227 0.57 -0.5
218,406 - Ga0059261_0227 0.57 -1.2
218,938 - +1.9
218,938 - -1.1

Or see this region's nucleotide sequence