Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0197

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0196 and Ga0059261_0197 are separated by 21 nucleotidesGa0059261_0197 and Ga0059261_0198 overlap by 26 nucleotides Ga0059261_0196: Ga0059261_0196 - Uncharacterized protein conserved in bacteria, at 181,397 to 183,217 _0196 Ga0059261_0197: Ga0059261_0197 - hypothetical protein, at 183,239 to 183,616 _0197 Ga0059261_0198: Ga0059261_0198 - alanyl-tRNA synthetase (EC 6.1.1.7), at 183,591 to 186,251 _0198 Position (kb) 183 184Strain fitness (log2 ratio) -2 -1 0 1 2at 182.254 kb on + strand, within Ga0059261_0196at 182.254 kb on + strand, within Ga0059261_0196at 182.254 kb on + strand, within Ga0059261_0196at 182.255 kb on - strand, within Ga0059261_0196at 182.255 kb on - strand, within Ga0059261_0196at 182.255 kb on - strand, within Ga0059261_0196at 182.355 kb on + strandat 182.355 kb on + strandat 182.355 kb on + strand, within Ga0059261_0196at 182.356 kb on - strand, within Ga0059261_0196at 182.358 kb on + strand, within Ga0059261_0196at 182.359 kb on - strand, within Ga0059261_0196at 182.456 kb on + strand, within Ga0059261_0196at 182.456 kb on + strand, within Ga0059261_0196at 182.456 kb on + strand, within Ga0059261_0196at 182.456 kb on + strand, within Ga0059261_0196at 182.456 kb on + strand, within Ga0059261_0196at 182.457 kb on - strand, within Ga0059261_0196at 182.457 kb on - strand, within Ga0059261_0196at 182.457 kb on - strand, within Ga0059261_0196at 182.457 kb on - strand, within Ga0059261_0196at 182.457 kb on - strand, within Ga0059261_0196at 182.457 kb on - strand, within Ga0059261_0196at 182.532 kb on + strand, within Ga0059261_0196at 182.532 kb on + strand, within Ga0059261_0196at 182.532 kb on + strand, within Ga0059261_0196at 182.532 kb on + strand, within Ga0059261_0196at 182.532 kb on + strand, within Ga0059261_0196at 182.532 kb on + strand, within Ga0059261_0196at 182.532 kb on + strand, within Ga0059261_0196at 182.533 kb on - strand, within Ga0059261_0196at 182.533 kb on - strand, within Ga0059261_0196at 182.533 kb on - strand, within Ga0059261_0196at 182.533 kb on - strand, within Ga0059261_0196at 182.610 kb on + strand, within Ga0059261_0196at 182.610 kb on + strand, within Ga0059261_0196at 182.610 kb on + strand, within Ga0059261_0196at 182.610 kb on + strand, within Ga0059261_0196at 182.610 kb on + strand, within Ga0059261_0196at 182.610 kb on + strand, within Ga0059261_0196at 182.610 kb on + strand, within Ga0059261_0196at 182.611 kb on - strand, within Ga0059261_0196at 182.611 kb on - strand, within Ga0059261_0196at 182.624 kb on + strand, within Ga0059261_0196at 182.703 kb on + strand, within Ga0059261_0196at 182.703 kb on + strand, within Ga0059261_0196at 182.703 kb on + strand, within Ga0059261_0196at 182.703 kb on + strand, within Ga0059261_0196at 182.703 kb on + strand, within Ga0059261_0196at 182.704 kb on - strand, within Ga0059261_0196at 182.704 kb on - strand, within Ga0059261_0196at 182.826 kb on + strand, within Ga0059261_0196at 182.826 kb on + strand, within Ga0059261_0196at 182.826 kb on + strand, within Ga0059261_0196at 182.826 kb on + strand, within Ga0059261_0196at 182.826 kb on + strand, within Ga0059261_0196at 182.826 kb on + strand, within Ga0059261_0196at 182.827 kb on - strand, within Ga0059261_0196at 182.827 kb on - strand, within Ga0059261_0196at 182.827 kb on - strand, within Ga0059261_0196at 182.827 kb on - strand, within Ga0059261_0196at 182.868 kb on + strand, within Ga0059261_0196at 182.868 kb on + strand, within Ga0059261_0196at 182.868 kb on + strand, within Ga0059261_0196at 182.868 kb on + strand, within Ga0059261_0196at 182.868 kb on + strand, within Ga0059261_0196at 182.868 kb on + strand, within Ga0059261_0196at 182.868 kb on + strand, within Ga0059261_0196at 182.868 kb on + strand, within Ga0059261_0196at 182.869 kb on - strand, within Ga0059261_0196at 182.869 kb on - strand, within Ga0059261_0196at 182.869 kb on - strand, within Ga0059261_0196at 182.869 kb on - strand, within Ga0059261_0196at 182.987 kb on - strand, within Ga0059261_0196at 182.987 kb on - strand, within Ga0059261_0196at 182.987 kb on - strand, within Ga0059261_0196at 182.987 kb on - strand, within Ga0059261_0196at 183.224 kb on + strandat 183.225 kb on - strandat 183.510 kb on + strand, within Ga0059261_0197

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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182,254 + Ga0059261_0196 0.47 -0.1
182,254 + Ga0059261_0196 0.47 -0.1
182,254 + Ga0059261_0196 0.47 -0.6
182,255 - Ga0059261_0196 0.47 -0.0
182,255 - Ga0059261_0196 0.47 -0.8
182,255 - Ga0059261_0196 0.47 +0.6
182,355 + +0.9
182,355 + -1.4
182,355 + Ga0059261_0196 0.53 -0.3
182,356 - Ga0059261_0196 0.53 -0.2
182,358 + Ga0059261_0196 0.53 +0.1
182,359 - Ga0059261_0196 0.53 +1.0
182,456 + Ga0059261_0196 0.58 -1.9
182,456 + Ga0059261_0196 0.58 +1.9
182,456 + Ga0059261_0196 0.58 -0.4
182,456 + Ga0059261_0196 0.58 +0.9
182,456 + Ga0059261_0196 0.58 -0.3
182,457 - Ga0059261_0196 0.58 +0.1
182,457 - Ga0059261_0196 0.58 -0.1
182,457 - Ga0059261_0196 0.58 -0.3
182,457 - Ga0059261_0196 0.58 +0.6
182,457 - Ga0059261_0196 0.58 -0.1
182,457 - Ga0059261_0196 0.58 -0.5
182,532 + Ga0059261_0196 0.62 -0.1
182,532 + Ga0059261_0196 0.62 -1.1
182,532 + Ga0059261_0196 0.62 -0.1
182,532 + Ga0059261_0196 0.62 -0.2
182,532 + Ga0059261_0196 0.62 -1.3
182,532 + Ga0059261_0196 0.62 -0.8
182,532 + Ga0059261_0196 0.62 -1.0
182,533 - Ga0059261_0196 0.62 -0.7
182,533 - Ga0059261_0196 0.62 +1.7
182,533 - Ga0059261_0196 0.62 +0.2
182,533 - Ga0059261_0196 0.62 -0.4
182,610 + Ga0059261_0196 0.67 +1.6
182,610 + Ga0059261_0196 0.67 +0.3
182,610 + Ga0059261_0196 0.67 +0.2
182,610 + Ga0059261_0196 0.67 +1.4
182,610 + Ga0059261_0196 0.67 +1.2
182,610 + Ga0059261_0196 0.67 +0.2
182,610 + Ga0059261_0196 0.67 +0.1
182,611 - Ga0059261_0196 0.67 +0.4
182,611 - Ga0059261_0196 0.67 +1.1
182,624 + Ga0059261_0196 0.67 -0.4
182,703 + Ga0059261_0196 0.72 -0.2
182,703 + Ga0059261_0196 0.72 -0.9
182,703 + Ga0059261_0196 0.72 -0.3
182,703 + Ga0059261_0196 0.72 -0.2
182,703 + Ga0059261_0196 0.72 -0.5
182,704 - Ga0059261_0196 0.72 +0.2
182,704 - Ga0059261_0196 0.72 -0.6
182,826 + Ga0059261_0196 0.78 -0.9
182,826 + Ga0059261_0196 0.78 +1.4
182,826 + Ga0059261_0196 0.78 +0.9
182,826 + Ga0059261_0196 0.78 -0.3
182,826 + Ga0059261_0196 0.78 +0.9
182,826 + Ga0059261_0196 0.78 +0.3
182,827 - Ga0059261_0196 0.79 +0.6
182,827 - Ga0059261_0196 0.79 -0.4
182,827 - Ga0059261_0196 0.79 +0.5
182,827 - Ga0059261_0196 0.79 +0.1
182,868 + Ga0059261_0196 0.81 -0.6
182,868 + Ga0059261_0196 0.81 -0.7
182,868 + Ga0059261_0196 0.81 +0.8
182,868 + Ga0059261_0196 0.81 +0.3
182,868 + Ga0059261_0196 0.81 +0.7
182,868 + Ga0059261_0196 0.81 -1.6
182,868 + Ga0059261_0196 0.81 -0.2
182,868 + Ga0059261_0196 0.81 +0.0
182,869 - Ga0059261_0196 0.81 -0.7
182,869 - Ga0059261_0196 0.81 +0.0
182,869 - Ga0059261_0196 0.81 -0.3
182,869 - Ga0059261_0196 0.81 -0.1
182,987 - Ga0059261_0196 0.87 +0.7
182,987 - Ga0059261_0196 0.87 -0.1
182,987 - Ga0059261_0196 0.87 +0.6
182,987 - Ga0059261_0196 0.87 +0.3
183,224 + +0.3
183,225 - -0.2
183,510 + Ga0059261_0197 0.72 -2.2

Or see this region's nucleotide sequence