Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0169 and Ga0059261_0170 overlap by 4 nucleotides Ga0059261_0170 and Ga0059261_0171 overlap by 4 nucleotides Ga0059261_0171 and Ga0059261_0172 overlap by 4 nucleotides Ga0059261_0172 and Ga0059261_0173 overlap by 4 nucleotides Ga0059261_0173 and Ga0059261_0174 overlap by 4 nucleotides Ga0059261_0174 and Ga0059261_0175 overlap by 4 nucleotides
Ga0059261_0169: Ga0059261_0169 - hypothetical protein, at 156,250 to 156,900
_0169
Ga0059261_0170: Ga0059261_0170 - Uncharacterized protein involved in biosynthesis of c-type cytochromes, at 156,897 to 157,274
_0170
Ga0059261_0171: Ga0059261_0171 - Thiol-disulfide isomerase and thioredoxins, at 157,271 to 157,798
_0171
Ga0059261_0172: Ga0059261_0172 - Cytochrome c biogenesis factor, at 157,795 to 159,729
_0172
Ga0059261_0173: Ga0059261_0173 - Cytochrome c-type biogenesis protein CcmE, at 159,726 to 160,160
_0173
Ga0059261_0174: Ga0059261_0174 - hypothetical protein, at 160,157 to 160,288
_0174
Ga0059261_0175: Ga0059261_0175 - heme exporter protein CcmC, at 160,285 to 161,001
_0175
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.825 kb on + strand, within Ga0059261_0169 at 156.825 kb on + strand, within Ga0059261_0169 at 156.825 kb on + strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.875 kb on - strand at 156.902 kb on + strand at 156.902 kb on + strand at 156.903 kb on - strand at 156.903 kb on - strand at 157.006 kb on + strand, within Ga0059261_0170 at 157.006 kb on + strand, within Ga0059261_0170 at 157.007 kb on - strand, within Ga0059261_0170 at 157.015 kb on + strand at 157.015 kb on + strand, within Ga0059261_0170 at 157.016 kb on - strand, within Ga0059261_0170 at 157.016 kb on - strand, within Ga0059261_0170 at 157.016 kb on - strand at 157.016 kb on - strand, within Ga0059261_0170 at 157.016 kb on - strand, within Ga0059261_0170 at 157.024 kb on + strand, within Ga0059261_0170 at 157.024 kb on + strand, within Ga0059261_0170 at 157.112 kb on + strand, within Ga0059261_0170 at 157.113 kb on - strand, within Ga0059261_0170 at 157.113 kb on - strand, within Ga0059261_0170 at 157.113 kb on - strand at 157.113 kb on - strand, within Ga0059261_0170 at 157.219 kb on + strand, within Ga0059261_0170 at 157.333 kb on + strand, within Ga0059261_0171 at 157.443 kb on + strand, within Ga0059261_0171 at 157.444 kb on - strand, within Ga0059261_0171 at 157.444 kb on - strand, within Ga0059261_0171 at 157.746 kb on - strand at 157.823 kb on - strand at 157.823 kb on - strand at 157.823 kb on - strand at 157.933 kb on + strand at 157.933 kb on + strand at 157.933 kb on + strand at 157.933 kb on + strand at 157.934 kb on - strand at 157.934 kb on - strand at 157.934 kb on - strand at 157.934 kb on - strand at 157.970 kb on - strand at 157.976 kb on + strand at 157.976 kb on + strand at 157.977 kb on - strand at 157.977 kb on - strand at 157.977 kb on - strand at 158.019 kb on + strand, within Ga0059261_0172 at 158.039 kb on + strand, within Ga0059261_0172 at 158.040 kb on - strand at 158.040 kb on - strand, within Ga0059261_0172 at 158.040 kb on - strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.183 kb on + strand, within Ga0059261_0172 at 158.183 kb on + strand, within Ga0059261_0172 at 158.184 kb on - strand, within Ga0059261_0172 at 158.196 kb on - strand, within Ga0059261_0172 at 158.196 kb on - strand, within Ga0059261_0172 at 158.312 kb on - strand, within Ga0059261_0172 at 158.674 kb on + strand, within Ga0059261_0172 at 158.745 kb on - strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.769 kb on - strand, within Ga0059261_0172 at 158.769 kb on - strand, within Ga0059261_0172 at 159.031 kb on + strand at 159.031 kb on + strand at 159.032 kb on - strand, within Ga0059261_0172 at 159.032 kb on - strand, within Ga0059261_0172 at 159.032 kb on - strand, within Ga0059261_0172 at 159.039 kb on - strand at 159.041 kb on + strand, within Ga0059261_0172 at 159.041 kb on + strand, within Ga0059261_0172 at 159.050 kb on + strand, within Ga0059261_0172 at 159.050 kb on + strand, within Ga0059261_0172 at 159.050 kb on + strand, within Ga0059261_0172 at 159.051 kb on - strand, within Ga0059261_0172 at 159.098 kb on - strand, within Ga0059261_0172 at 159.098 kb on - strand, within Ga0059261_0172 at 159.192 kb on - strand, within Ga0059261_0172 at 159.192 kb on - strand, within Ga0059261_0172 at 159.200 kb on + strand, within Ga0059261_0172 at 159.321 kb on - strand, within Ga0059261_0172 at 159.321 kb on - strand, within Ga0059261_0172 at 159.436 kb on + strand, within Ga0059261_0172 at 159.437 kb on - strand, within Ga0059261_0172 at 159.482 kb on + strand, within Ga0059261_0172 at 159.482 kb on + strand, within Ga0059261_0172 at 159.483 kb on - strand, within Ga0059261_0172 at 159.782 kb on - strand, within Ga0059261_0173 at 159.782 kb on - strand, within Ga0059261_0173 at 160.052 kb on - strand, within Ga0059261_0173 at 160.198 kb on + strand, within Ga0059261_0174 at 160.199 kb on - strand, within Ga0059261_0174 at 160.257 kb on + strand, within Ga0059261_0174 at 160.258 kb on - strand, within Ga0059261_0174 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.539 kb on + strand, within Ga0059261_0175 at 160.540 kb on - strand at 160.540 kb on - strand, within Ga0059261_0175 at 160.540 kb on - strand, within Ga0059261_0175 at 160.593 kb on + strand, within Ga0059261_0175 at 160.594 kb on - strand at 160.594 kb on - strand, within Ga0059261_0175 at 160.595 kb on + strand, within Ga0059261_0175 at 160.595 kb on + strand at 160.595 kb on + strand, within Ga0059261_0175 at 160.595 kb on + strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 156,825 + Ga0059261_0169 0.88 +0.1 156,825 + Ga0059261_0169 0.88 +0.6 156,825 + Ga0059261_0169 0.88 -0.6 156,826 - Ga0059261_0169 0.88 -0.3 156,826 - Ga0059261_0169 0.88 +2.5 156,826 - Ga0059261_0169 0.88 +0.4 156,826 - Ga0059261_0169 0.88 +0.4 156,826 - Ga0059261_0169 0.88 +0.2 156,826 - Ga0059261_0169 0.88 +0.9 156,875 - +0.5 156,902 + -0.0 156,902 + +1.1 156,903 - -0.8 156,903 - +0.9 157,006 + Ga0059261_0170 0.29 +0.9 157,006 + Ga0059261_0170 0.29 -2.7 157,007 - Ga0059261_0170 0.29 -1.1 157,015 + -1.4 157,015 + Ga0059261_0170 0.31 -0.6 157,016 - Ga0059261_0170 0.31 -0.8 157,016 - Ga0059261_0170 0.31 -3.0 157,016 - -0.1 157,016 - Ga0059261_0170 0.31 -0.3 157,016 - Ga0059261_0170 0.31 -0.4 157,024 + Ga0059261_0170 0.34 -0.7 157,024 + Ga0059261_0170 0.34 -0.8 157,112 + Ga0059261_0170 0.57 -0.7 157,113 - Ga0059261_0170 0.57 -1.1 157,113 - Ga0059261_0170 0.57 +0.1 157,113 - +1.3 157,113 - Ga0059261_0170 0.57 -1.1 157,219 + Ga0059261_0170 0.85 -1.8 157,333 + Ga0059261_0171 0.12 -0.6 157,443 + Ga0059261_0171 0.33 -1.1 157,444 - Ga0059261_0171 0.33 -3.1 157,444 - Ga0059261_0171 0.33 -1.9 157,746 - -4.0 157,823 - -0.1 157,823 - +0.4 157,823 - -0.4 157,933 + +0.1 157,933 + -1.8 157,933 + -1.1 157,933 + +1.3 157,934 - -0.4 157,934 - -1.1 157,934 - -1.6 157,934 - -2.3 157,970 - +0.1 157,976 + -0.7 157,976 + -0.7 157,977 - +1.6 157,977 - -1.1 157,977 - -0.8 158,019 + Ga0059261_0172 0.12 +0.3 158,039 + Ga0059261_0172 0.13 -0.7 158,040 - +0.9 158,040 - Ga0059261_0172 0.13 -1.4 158,040 - Ga0059261_0172 0.13 +0.2 158,180 + Ga0059261_0172 0.20 -0.6 158,180 + Ga0059261_0172 0.20 +0.9 158,180 + Ga0059261_0172 0.20 -0.2 158,180 + Ga0059261_0172 0.20 -2.1 158,180 + Ga0059261_0172 0.20 -1.4 158,180 + Ga0059261_0172 0.20 -1.4 158,180 + Ga0059261_0172 0.20 -2.1 158,180 + Ga0059261_0172 0.20 -1.1 158,180 + Ga0059261_0172 0.20 -1.9 158,181 - Ga0059261_0172 0.20 -3.0 158,181 - Ga0059261_0172 0.20 -0.7 158,181 - Ga0059261_0172 0.20 -1.1 158,181 - Ga0059261_0172 0.20 -2.8 158,181 - Ga0059261_0172 0.20 -0.2 158,183 + Ga0059261_0172 0.20 -2.4 158,183 + Ga0059261_0172 0.20 -1.3 158,184 - Ga0059261_0172 0.20 +0.9 158,196 - Ga0059261_0172 0.21 -0.1 158,196 - Ga0059261_0172 0.21 +0.3 158,312 - Ga0059261_0172 0.27 -1.6 158,674 + Ga0059261_0172 0.45 +0.5 158,745 - Ga0059261_0172 0.49 +0.3 158,768 + Ga0059261_0172 0.50 -0.9 158,768 + Ga0059261_0172 0.50 -0.1 158,768 + Ga0059261_0172 0.50 -0.1 158,768 + Ga0059261_0172 0.50 -1.1 158,768 + Ga0059261_0172 0.50 -1.1 158,768 + Ga0059261_0172 0.50 -0.1 158,769 - Ga0059261_0172 0.50 -1.1 158,769 - Ga0059261_0172 0.50 -0.4 159,031 + -0.1 159,031 + -0.7 159,032 - Ga0059261_0172 0.64 -1.2 159,032 - Ga0059261_0172 0.64 -0.7 159,032 - Ga0059261_0172 0.64 -0.4 159,039 - +0.9 159,041 + Ga0059261_0172 0.64 +1.5 159,041 + Ga0059261_0172 0.64 -1.9 159,050 + Ga0059261_0172 0.65 -1.9 159,050 + Ga0059261_0172 0.65 -1.4 159,050 + Ga0059261_0172 0.65 -1.7 159,051 - Ga0059261_0172 0.65 -0.1 159,098 - Ga0059261_0172 0.67 -2.1 159,098 - Ga0059261_0172 0.67 -1.3 159,192 - Ga0059261_0172 0.72 -2.3 159,192 - Ga0059261_0172 0.72 -0.2 159,200 + Ga0059261_0172 0.73 -0.3 159,321 - Ga0059261_0172 0.79 -1.1 159,321 - Ga0059261_0172 0.79 -1.1 159,436 + Ga0059261_0172 0.85 +0.9 159,437 - Ga0059261_0172 0.85 -2.3 159,482 + Ga0059261_0172 0.87 -0.9 159,482 + Ga0059261_0172 0.87 -0.1 159,483 - Ga0059261_0172 0.87 +0.6 159,782 - Ga0059261_0173 0.13 +0.1 159,782 - Ga0059261_0173 0.13 -0.1 160,052 - Ga0059261_0173 0.75 -0.1 160,198 + Ga0059261_0174 0.31 +0.3 160,199 - Ga0059261_0174 0.32 +0.1 160,257 + Ga0059261_0174 0.76 -1.7 160,258 - Ga0059261_0174 0.77 -0.1 160,408 + Ga0059261_0175 0.17 -2.1 160,408 + Ga0059261_0175 0.17 -0.8 160,408 + Ga0059261_0175 0.17 -1.6 160,408 + Ga0059261_0175 0.17 -1.2 160,539 + Ga0059261_0175 0.35 -1.7 160,540 - -0.1 160,540 - Ga0059261_0175 0.36 -0.1 160,540 - Ga0059261_0175 0.36 -0.5 160,593 + Ga0059261_0175 0.43 -1.1 160,594 - -0.1 160,594 - Ga0059261_0175 0.43 -0.8 160,595 + Ga0059261_0175 0.43 -0.4 160,595 + -0.1 160,595 + Ga0059261_0175 0.43 -0.7 160,595 + Ga0059261_0175 0.43 -2.3 160,596 - Ga0059261_0175 0.43 -1.6 160,596 - Ga0059261_0175 0.43 -1.9 160,596 - Ga0059261_0175 0.43 -3.3
Or see this region's nucleotide sequence