Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0156

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0154 and Ga0059261_0155 are separated by 137 nucleotidesGa0059261_0155 and Ga0059261_0156 are separated by 112 nucleotidesGa0059261_0156 and Ga0059261_0157 are separated by 9 nucleotides Ga0059261_0154: Ga0059261_0154 - Predicted permeases, at 144,722 to 145,486 _0154 Ga0059261_0155: Ga0059261_0155 - peroxiredoxin, at 145,624 to 146,187 _0155 Ga0059261_0156: Ga0059261_0156 - alkyl hydroperoxide reductase subunit F, at 146,300 to 147,877 _0156 Ga0059261_0157: Ga0059261_0157 - AraC-type DNA-binding domain-containing proteins, at 147,887 to 148,786 _0157 Position (kb) 146 147 148Strain fitness (log2 ratio) -2 -1 0 1 2 3at 145.405 kb on - strand, within Ga0059261_0154at 145.405 kb on - strand, within Ga0059261_0154at 145.460 kb on + strandat 145.460 kb on + strandat 145.460 kb on + strandat 145.460 kb on + strandat 145.460 kb on + strandat 145.460 kb on + strandat 145.461 kb on - strandat 145.470 kb on - strandat 145.573 kb on + strandat 145.573 kb on + strandat 145.573 kb on + strandat 145.574 kb on - strandat 145.574 kb on - strandat 145.576 kb on - strandat 145.606 kb on + strandat 145.738 kb on + strand, within Ga0059261_0155at 145.738 kb on + strand, within Ga0059261_0155at 145.739 kb on - strand, within Ga0059261_0155at 145.796 kb on - strand, within Ga0059261_0155at 145.826 kb on + strand, within Ga0059261_0155at 145.827 kb on - strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.828 kb on + strand, within Ga0059261_0155at 145.829 kb on - strand, within Ga0059261_0155at 145.829 kb on - strandat 145.829 kb on - strand, within Ga0059261_0155at 145.875 kb on + strand, within Ga0059261_0155at 145.876 kb on - strand, within Ga0059261_0155at 145.903 kb on + strand, within Ga0059261_0155at 145.903 kb on + strand, within Ga0059261_0155at 145.903 kb on + strand, within Ga0059261_0155at 145.903 kb on + strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.904 kb on - strand, within Ga0059261_0155at 145.905 kb on - strand, within Ga0059261_0155at 145.906 kb on + strandat 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.906 kb on + strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.907 kb on - strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.908 kb on + strand, within Ga0059261_0155at 145.909 kb on - strand, within Ga0059261_0155at 145.909 kb on - strand, within Ga0059261_0155at 145.909 kb on - strand, within Ga0059261_0155at 145.909 kb on - strand, within Ga0059261_0155at 146.092 kb on + strand, within Ga0059261_0155at 146.093 kb on - strand, within Ga0059261_0155at 146.093 kb on - strand, within Ga0059261_0155at 146.186 kb on - strandat 146.186 kb on - strandat 146.201 kb on + strandat 146.202 kb on - strandat 146.202 kb on - strandat 146.273 kb on + strandat 146.274 kb on - strandat 146.336 kb on + strandat 146.337 kb on - strandat 146.663 kb on + strand, within Ga0059261_0156at 146.663 kb on + strand, within Ga0059261_0156at 146.663 kb on + strand, within Ga0059261_0156at 146.664 kb on - strand, within Ga0059261_0156at 146.664 kb on - strand, within Ga0059261_0156at 146.664 kb on - strand, within Ga0059261_0156at 146.981 kb on + strand, within Ga0059261_0156at 146.981 kb on + strand, within Ga0059261_0156at 146.981 kb on + strand, within Ga0059261_0156at 146.981 kb on + strand, within Ga0059261_0156at 146.981 kb on + strand, within Ga0059261_0156at 146.981 kb on + strand, within Ga0059261_0156at 146.981 kb on + strandat 146.981 kb on + strand, within Ga0059261_0156at 146.982 kb on - strand, within Ga0059261_0156at 146.982 kb on - strand, within Ga0059261_0156at 146.982 kb on - strand, within Ga0059261_0156at 147.080 kb on + strand, within Ga0059261_0156at 147.080 kb on + strand, within Ga0059261_0156at 147.081 kb on - strand, within Ga0059261_0156at 147.081 kb on - strand, within Ga0059261_0156at 147.302 kb on + strand, within Ga0059261_0156at 147.323 kb on + strand, within Ga0059261_0156at 147.324 kb on - strand, within Ga0059261_0156at 147.449 kb on + strand, within Ga0059261_0156at 147.450 kb on - strand, within Ga0059261_0156at 147.450 kb on - strand, within Ga0059261_0156at 147.450 kb on - strand, within Ga0059261_0156at 147.575 kb on + strand, within Ga0059261_0156at 147.575 kb on + strand, within Ga0059261_0156at 147.575 kb on + strand, within Ga0059261_0156at 147.576 kb on - strand, within Ga0059261_0156at 147.576 kb on - strand, within Ga0059261_0156at 147.576 kb on - strand, within Ga0059261_0156at 147.576 kb on - strand, within Ga0059261_0156at 147.576 kb on - strand, within Ga0059261_0156at 147.770 kb on + strandat 147.770 kb on + strandat 147.771 kb on - strandat 147.771 kb on - strandat 147.830 kb on + strandat 147.830 kb on + strandat 147.830 kb on + strandat 147.830 kb on + strandat 147.830 kb on + strandat 147.830 kb on + strandat 147.831 kb on - strandat 147.855 kb on - strandat 147.906 kb on + strandat 147.906 kb on + strandat 147.907 kb on - strandat 147.907 kb on - strandat 147.907 kb on - strandat 147.907 kb on - strandat 147.907 kb on - strandat 147.970 kb on - strandat 147.970 kb on - strandat 148.056 kb on + strand, within Ga0059261_0157at 148.056 kb on + strand, within Ga0059261_0157at 148.057 kb on - strand, within Ga0059261_0157at 148.057 kb on - strand, within Ga0059261_0157at 148.057 kb on - strand, within Ga0059261_0157at 148.057 kb on - strand, within Ga0059261_0157at 148.057 kb on - strand, within Ga0059261_0157at 148.057 kb on - strand, within Ga0059261_0157at 148.057 kb on - strand, within Ga0059261_0157at 148.417 kb on + strand, within Ga0059261_0157at 148.417 kb on + strand, within Ga0059261_0157at 148.461 kb on + strand, within Ga0059261_0157at 148.663 kb on + strand, within Ga0059261_0157at 148.663 kb on + strand, within Ga0059261_0157at 148.663 kb on + strand, within Ga0059261_0157at 148.664 kb on - strandat 148.664 kb on - strand, within Ga0059261_0157at 148.664 kb on - strand, within Ga0059261_0157at 148.683 kb on + strand, within Ga0059261_0157at 148.683 kb on + strand, within Ga0059261_0157at 148.684 kb on - strand, within Ga0059261_0157at 148.684 kb on - strand, within Ga0059261_0157at 148.692 kb on + strand, within Ga0059261_0157at 148.787 kb on - strandat 148.805 kb on + strandat 148.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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145,405 - Ga0059261_0154 0.89 +0.9
145,405 - Ga0059261_0154 0.89 +0.2
145,460 + -0.7
145,460 + -0.4
145,460 + -1.2
145,460 + -0.1
145,460 + +0.7
145,460 + +0.4
145,461 - +1.3
145,470 - +0.7
145,573 + +0.5
145,573 + -0.3
145,573 + +1.3
145,574 - -0.1
145,574 - -0.7
145,576 - -0.4
145,606 + +0.7
145,738 + Ga0059261_0155 0.20 +0.5
145,738 + Ga0059261_0155 0.20 +1.2
145,739 - Ga0059261_0155 0.20 +0.7
145,796 - Ga0059261_0155 0.30 -1.0
145,826 + Ga0059261_0155 0.36 +1.3
145,827 - Ga0059261_0155 0.36 -0.6
145,828 + Ga0059261_0155 0.36 -0.3
145,828 + Ga0059261_0155 0.36 +0.1
145,828 + Ga0059261_0155 0.36 +0.5
145,828 + Ga0059261_0155 0.36 +1.1
145,828 + Ga0059261_0155 0.36 -0.2
145,828 + Ga0059261_0155 0.36 -0.3
145,828 + Ga0059261_0155 0.36 +0.4
145,828 + Ga0059261_0155 0.36 +0.8
145,829 - Ga0059261_0155 0.36 +2.1
145,829 - +0.2
145,829 - Ga0059261_0155 0.36 +0.3
145,875 + Ga0059261_0155 0.45 +0.7
145,876 - Ga0059261_0155 0.45 -2.7
145,903 + Ga0059261_0155 0.49 -0.8
145,903 + Ga0059261_0155 0.49 -0.3
145,903 + Ga0059261_0155 0.49 +0.9
145,903 + Ga0059261_0155 0.49 +0.6
145,904 - Ga0059261_0155 0.50 +1.9
145,904 - Ga0059261_0155 0.50 +0.6
145,904 - Ga0059261_0155 0.50 +0.9
145,904 - Ga0059261_0155 0.50 -0.1
145,904 - Ga0059261_0155 0.50 -0.3
145,905 - Ga0059261_0155 0.50 +0.9
145,906 + +2.9
145,906 + Ga0059261_0155 0.50 -1.1
145,906 + Ga0059261_0155 0.50 -2.0
145,906 + Ga0059261_0155 0.50 +0.3
145,906 + Ga0059261_0155 0.50 -1.0
145,906 + Ga0059261_0155 0.50 +0.6
145,906 + Ga0059261_0155 0.50 +0.2
145,907 - Ga0059261_0155 0.50 +0.4
145,907 - Ga0059261_0155 0.50 +1.5
145,907 - Ga0059261_0155 0.50 +1.0
145,907 - Ga0059261_0155 0.50 +1.2
145,907 - Ga0059261_0155 0.50 +0.5
145,907 - Ga0059261_0155 0.50 +1.4
145,907 - Ga0059261_0155 0.50 +1.9
145,908 + Ga0059261_0155 0.50 +1.2
145,908 + Ga0059261_0155 0.50 +0.6
145,908 + Ga0059261_0155 0.50 +0.6
145,908 + Ga0059261_0155 0.50 -0.0
145,908 + Ga0059261_0155 0.50 -0.3
145,908 + Ga0059261_0155 0.50 +0.2
145,908 + Ga0059261_0155 0.50 -2.1
145,909 - Ga0059261_0155 0.51 +1.5
145,909 - Ga0059261_0155 0.51 +0.9
145,909 - Ga0059261_0155 0.51 +0.9
145,909 - Ga0059261_0155 0.51 +1.1
146,092 + Ga0059261_0155 0.83 +0.5
146,093 - Ga0059261_0155 0.83 +2.2
146,093 - Ga0059261_0155 0.83 -0.1
146,186 - +0.1
146,186 - +0.3
146,201 + -0.2
146,202 - +0.9
146,202 - +0.9
146,273 + +0.9
146,274 - +1.2
146,336 + +0.1
146,337 - +0.6
146,663 + Ga0059261_0156 0.23 -0.0
146,663 + Ga0059261_0156 0.23 +0.5
146,663 + Ga0059261_0156 0.23 -0.6
146,664 - Ga0059261_0156 0.23 +0.5
146,664 - Ga0059261_0156 0.23 +0.9
146,664 - Ga0059261_0156 0.23 -0.1
146,981 + Ga0059261_0156 0.43 -0.1
146,981 + Ga0059261_0156 0.43 +0.6
146,981 + Ga0059261_0156 0.43 +0.2
146,981 + Ga0059261_0156 0.43 +1.3
146,981 + Ga0059261_0156 0.43 +0.6
146,981 + Ga0059261_0156 0.43 +2.9
146,981 + +0.2
146,981 + Ga0059261_0156 0.43 +1.8
146,982 - Ga0059261_0156 0.43 +0.6
146,982 - Ga0059261_0156 0.43 +0.3
146,982 - Ga0059261_0156 0.43 +0.7
147,080 + Ga0059261_0156 0.49 +0.9
147,080 + Ga0059261_0156 0.49 +0.9
147,081 - Ga0059261_0156 0.49 +0.7
147,081 - Ga0059261_0156 0.49 -0.4
147,302 + Ga0059261_0156 0.63 +0.5
147,323 + Ga0059261_0156 0.65 +0.7
147,324 - Ga0059261_0156 0.65 -0.5
147,449 + Ga0059261_0156 0.73 -0.5
147,450 - Ga0059261_0156 0.73 +0.4
147,450 - Ga0059261_0156 0.73 +0.7
147,450 - Ga0059261_0156 0.73 -0.3
147,575 + Ga0059261_0156 0.81 +0.4
147,575 + Ga0059261_0156 0.81 +0.1
147,575 + Ga0059261_0156 0.81 +1.3
147,576 - Ga0059261_0156 0.81 -0.2
147,576 - Ga0059261_0156 0.81 -0.8
147,576 - Ga0059261_0156 0.81 +0.1
147,576 - Ga0059261_0156 0.81 -0.4
147,576 - Ga0059261_0156 0.81 -0.0
147,770 + +0.1
147,770 + +0.6
147,771 - +0.2
147,771 - +0.4
147,830 + +1.8
147,830 + -0.1
147,830 + +0.4
147,830 + +0.2
147,830 + -0.7
147,830 + +0.3
147,831 - +1.2
147,855 - +0.9
147,906 + -2.0
147,906 + -0.1
147,907 - +0.3
147,907 - +0.1
147,907 - +0.4
147,907 - +0.2
147,907 - -1.6
147,970 - -0.4
147,970 - +0.2
148,056 + Ga0059261_0157 0.19 +0.4
148,056 + Ga0059261_0157 0.19 +0.4
148,057 - Ga0059261_0157 0.19 -0.6
148,057 - Ga0059261_0157 0.19 +0.7
148,057 - Ga0059261_0157 0.19 -0.2
148,057 - Ga0059261_0157 0.19 -0.3
148,057 - Ga0059261_0157 0.19 -0.5
148,057 - Ga0059261_0157 0.19 -1.7
148,057 - Ga0059261_0157 0.19 +0.2
148,417 + Ga0059261_0157 0.59 -0.7
148,417 + Ga0059261_0157 0.59 -0.6
148,461 + Ga0059261_0157 0.64 +0.3
148,663 + Ga0059261_0157 0.86 +0.3
148,663 + Ga0059261_0157 0.86 -1.7
148,663 + Ga0059261_0157 0.86 -0.1
148,664 - -0.7
148,664 - Ga0059261_0157 0.86 -0.2
148,664 - Ga0059261_0157 0.86 +0.6
148,683 + Ga0059261_0157 0.88 +0.4
148,683 + Ga0059261_0157 0.88 +0.4
148,684 - Ga0059261_0157 0.89 -1.1
148,684 - Ga0059261_0157 0.89 -0.1
148,692 + Ga0059261_0157 0.89 -0.0
148,787 - +0.1
148,805 + -0.2
148,805 + -0.3

Or see this region's nucleotide sequence