Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0141

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0140 and Ga0059261_0141 are separated by 55 nucleotidesGa0059261_0141 and Ga0059261_0142 are separated by 137 nucleotides Ga0059261_0140: Ga0059261_0140 - tRNA-U20-dihydrouridine synthase, at 133,932 to 134,957 _0140 Ga0059261_0141: Ga0059261_0141 - transcriptional regulator, LysR family, at 135,013 to 135,897 _0141 Ga0059261_0142: Ga0059261_0142 - Arabinose efflux permease, at 136,035 to 137,234 _0142 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 134.084 kb on - strand, within Ga0059261_0140at 134.131 kb on + strand, within Ga0059261_0140at 134.131 kb on + strand, within Ga0059261_0140at 134.152 kb on + strand, within Ga0059261_0140at 134.153 kb on - strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.174 kb on - strand, within Ga0059261_0140at 134.174 kb on - strand, within Ga0059261_0140at 134.257 kb on + strand, within Ga0059261_0140at 134.410 kb on + strand, within Ga0059261_0140at 134.410 kb on + strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.624 kb on + strand, within Ga0059261_0140at 134.625 kb on - strand, within Ga0059261_0140at 134.625 kb on - strand, within Ga0059261_0140at 134.710 kb on + strand, within Ga0059261_0140at 134.711 kb on - strand, within Ga0059261_0140at 134.845 kb on + strand, within Ga0059261_0140at 134.845 kb on + strand, within Ga0059261_0140at 134.986 kb on + strandat 134.986 kb on + strandat 134.986 kb on + strandat 134.987 kb on - strandat 135.120 kb on - strand, within Ga0059261_0141at 135.323 kb on + strand, within Ga0059261_0141at 135.323 kb on + strand, within Ga0059261_0141at 135.324 kb on - strand, within Ga0059261_0141at 135.324 kb on - strand, within Ga0059261_0141at 135.324 kb on - strand, within Ga0059261_0141at 135.392 kb on + strand, within Ga0059261_0141at 135.392 kb on + strand, within Ga0059261_0141at 135.393 kb on - strand, within Ga0059261_0141at 135.393 kb on - strand, within Ga0059261_0141at 135.974 kb on + strandat 135.974 kb on + strandat 135.975 kb on - strandat 136.224 kb on + strand, within Ga0059261_0142at 136.224 kb on + strand, within Ga0059261_0142at 136.224 kb on + strand, within Ga0059261_0142at 136.224 kb on + strand, within Ga0059261_0142at 136.224 kb on + strand, within Ga0059261_0142at 136.225 kb on - strand, within Ga0059261_0142at 136.225 kb on - strand, within Ga0059261_0142at 136.290 kb on - strand, within Ga0059261_0142at 136.290 kb on - strandat 136.332 kb on - strand, within Ga0059261_0142at 136.332 kb on - strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.356 kb on + strand, within Ga0059261_0142at 136.357 kb on - strand, within Ga0059261_0142at 136.357 kb on - strand, within Ga0059261_0142at 136.357 kb on - strand, within Ga0059261_0142at 136.357 kb on - strand, within Ga0059261_0142at 136.357 kb on - strand, within Ga0059261_0142at 136.357 kb on - strand, within Ga0059261_0142at 136.428 kb on + strand, within Ga0059261_0142at 136.429 kb on - strand, within Ga0059261_0142at 136.429 kb on - strand, within Ga0059261_0142at 136.429 kb on - strand, within Ga0059261_0142at 136.429 kb on - strand, within Ga0059261_0142at 136.429 kb on - strand, within Ga0059261_0142at 136.515 kb on - strand, within Ga0059261_0142at 136.716 kb on + strand, within Ga0059261_0142at 136.716 kb on + strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.717 kb on - strand, within Ga0059261_0142at 136.740 kb on + strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.741 kb on - strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strand, within Ga0059261_0142at 136.746 kb on + strandat 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strandat 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.747 kb on - strand, within Ga0059261_0142at 136.793 kb on + strand, within Ga0059261_0142

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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134,084 - Ga0059261_0140 0.15 +1.4
134,131 + Ga0059261_0140 0.19 +0.7
134,131 + Ga0059261_0140 0.19 +0.5
134,152 + Ga0059261_0140 0.21 -0.4
134,153 - Ga0059261_0140 0.22 +0.1
134,173 + Ga0059261_0140 0.23 +0.6
134,173 + Ga0059261_0140 0.23 +0.3
134,173 + Ga0059261_0140 0.23 +0.1
134,174 - Ga0059261_0140 0.24 -0.2
134,174 - Ga0059261_0140 0.24 -0.4
134,257 + Ga0059261_0140 0.32 -1.1
134,410 + Ga0059261_0140 0.47 -0.8
134,410 + Ga0059261_0140 0.47 -0.1
134,411 - Ga0059261_0140 0.47 +1.1
134,411 - Ga0059261_0140 0.47 -0.3
134,411 - Ga0059261_0140 0.47 -0.1
134,411 - Ga0059261_0140 0.47 +1.1
134,411 - Ga0059261_0140 0.47 -1.1
134,624 + Ga0059261_0140 0.67 -0.4
134,625 - Ga0059261_0140 0.68 -0.2
134,625 - Ga0059261_0140 0.68 -0.0
134,710 + Ga0059261_0140 0.76 -0.8
134,711 - Ga0059261_0140 0.76 +0.6
134,845 + Ga0059261_0140 0.89 -0.2
134,845 + Ga0059261_0140 0.89 +0.9
134,986 + +0.2
134,986 + +1.9
134,986 + +0.3
134,987 - -1.6
135,120 - Ga0059261_0141 0.12 -0.9
135,323 + Ga0059261_0141 0.35 -1.5
135,323 + Ga0059261_0141 0.35 +0.4
135,324 - Ga0059261_0141 0.35 -0.7
135,324 - Ga0059261_0141 0.35 +0.0
135,324 - Ga0059261_0141 0.35 -1.3
135,392 + Ga0059261_0141 0.43 -1.0
135,392 + Ga0059261_0141 0.43 -1.0
135,393 - Ga0059261_0141 0.43 -0.2
135,393 - Ga0059261_0141 0.43 -0.9
135,974 + -0.0
135,974 + -1.0
135,975 - -0.4
136,224 + Ga0059261_0142 0.16 -0.3
136,224 + Ga0059261_0142 0.16 -2.1
136,224 + Ga0059261_0142 0.16 +0.3
136,224 + Ga0059261_0142 0.16 -0.0
136,224 + Ga0059261_0142 0.16 -1.4
136,225 - Ga0059261_0142 0.16 -0.9
136,225 - Ga0059261_0142 0.16 -0.2
136,290 - Ga0059261_0142 0.21 -2.3
136,290 - -0.5
136,332 - Ga0059261_0142 0.25 -0.3
136,332 - Ga0059261_0142 0.25 +0.2
136,356 + Ga0059261_0142 0.27 -0.3
136,356 + Ga0059261_0142 0.27 -0.2
136,356 + Ga0059261_0142 0.27 -1.4
136,356 + Ga0059261_0142 0.27 +0.4
136,356 + Ga0059261_0142 0.27 +0.2
136,356 + Ga0059261_0142 0.27 +0.2
136,356 + Ga0059261_0142 0.27 -0.4
136,356 + Ga0059261_0142 0.27 +0.8
136,356 + Ga0059261_0142 0.27 +0.4
136,356 + Ga0059261_0142 0.27 -0.1
136,356 + Ga0059261_0142 0.27 +0.6
136,356 + Ga0059261_0142 0.27 -1.0
136,357 - Ga0059261_0142 0.27 +0.1
136,357 - Ga0059261_0142 0.27 -0.2
136,357 - Ga0059261_0142 0.27 -0.3
136,357 - Ga0059261_0142 0.27 -0.0
136,357 - Ga0059261_0142 0.27 +0.1
136,357 - Ga0059261_0142 0.27 -0.3
136,428 + Ga0059261_0142 0.33 +0.1
136,429 - Ga0059261_0142 0.33 -0.1
136,429 - Ga0059261_0142 0.33 -0.1
136,429 - Ga0059261_0142 0.33 -0.4
136,429 - Ga0059261_0142 0.33 -0.3
136,429 - Ga0059261_0142 0.33 -0.4
136,515 - Ga0059261_0142 0.40 -1.2
136,716 + Ga0059261_0142 0.57 +0.2
136,716 + Ga0059261_0142 0.57 -1.9
136,717 - Ga0059261_0142 0.57 -0.3
136,717 - Ga0059261_0142 0.57 +0.7
136,717 - Ga0059261_0142 0.57 +0.2
136,717 - Ga0059261_0142 0.57 +0.4
136,717 - Ga0059261_0142 0.57 -1.3
136,717 - Ga0059261_0142 0.57 -0.1
136,740 + Ga0059261_0142 0.59 -0.3
136,741 - Ga0059261_0142 0.59 +0.2
136,741 - Ga0059261_0142 0.59 -0.7
136,741 - Ga0059261_0142 0.59 +0.8
136,741 - Ga0059261_0142 0.59 -0.2
136,741 - Ga0059261_0142 0.59 -1.2
136,741 - Ga0059261_0142 0.59 +1.9
136,741 - Ga0059261_0142 0.59 +0.0
136,746 + Ga0059261_0142 0.59 -0.3
136,746 + Ga0059261_0142 0.59 -0.5
136,746 + Ga0059261_0142 0.59 -1.0
136,746 + Ga0059261_0142 0.59 +1.3
136,746 + Ga0059261_0142 0.59 -0.9
136,746 + Ga0059261_0142 0.59 -0.2
136,746 + Ga0059261_0142 0.59 +0.6
136,746 + Ga0059261_0142 0.59 +0.1
136,746 + Ga0059261_0142 0.59 +0.2
136,746 + Ga0059261_0142 0.59 -0.8
136,746 + Ga0059261_0142 0.59 -0.2
136,746 + Ga0059261_0142 0.59 -0.0
136,746 + Ga0059261_0142 0.59 +0.0
136,746 + Ga0059261_0142 0.59 -0.3
136,746 + -0.1
136,747 - Ga0059261_0142 0.59 -0.5
136,747 - Ga0059261_0142 0.59 +0.7
136,747 - Ga0059261_0142 0.59 +0.5
136,747 - Ga0059261_0142 0.59 +0.9
136,747 - Ga0059261_0142 0.59 -1.4
136,747 - Ga0059261_0142 0.59 -0.1
136,747 - -0.1
136,747 - Ga0059261_0142 0.59 +0.9
136,747 - Ga0059261_0142 0.59 +0.1
136,747 - Ga0059261_0142 0.59 +1.0
136,747 - Ga0059261_0142 0.59 +2.5
136,793 + Ga0059261_0142 0.63 -0.3

Or see this region's nucleotide sequence