Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0073

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0071 and Ga0059261_0072 are separated by 200 nucleotidesGa0059261_0072 and Ga0059261_0073 overlap by 1 nucleotidesGa0059261_0073 and Ga0059261_0074 are separated by 17 nucleotides Ga0059261_0071: Ga0059261_0071 - Sporulation related domain/Sel1 repeat, at 62,975 to 63,955 _0071 Ga0059261_0072: Ga0059261_0072 - ATPases involved in chromosome partitioning, at 64,156 to 64,869 _0072 Ga0059261_0073: Ga0059261_0073 - hypothetical protein, at 64,869 to 65,492 _0073 Ga0059261_0074: Ga0059261_0074 - TPR repeat/Sporulation related domain, at 65,510 to 66,877 _0074 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1at 63.949 kb on + strandat 63.949 kb on + strandat 63.949 kb on + strandat 63.949 kb on + strandat 63.955 kb on + strandat 63.955 kb on + strandat 63.955 kb on + strandat 63.955 kb on + strandat 63.955 kb on + strandat 63.956 kb on - strandat 63.956 kb on - strandat 63.956 kb on - strandat 63.991 kb on + strandat 63.992 kb on - strandat 64.039 kb on - strandat 64.039 kb on - strandat 64.103 kb on + strandat 64.103 kb on + strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.104 kb on - strandat 64.164 kb on - strandat 64.411 kb on - strand, within Ga0059261_0072at 64.750 kb on + strand, within Ga0059261_0072at 64.750 kb on + strand, within Ga0059261_0072at 64.750 kb on + strand, within Ga0059261_0072at 64.750 kb on + strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.751 kb on - strand, within Ga0059261_0072at 64.980 kb on - strand, within Ga0059261_0073at 65.078 kb on + strand, within Ga0059261_0073at 65.078 kb on + strand, within Ga0059261_0073at 65.079 kb on - strand, within Ga0059261_0073at 65.117 kb on - strand, within Ga0059261_0073at 65.117 kb on - strand, within Ga0059261_0073at 65.404 kb on + strand, within Ga0059261_0073at 65.404 kb on + strand, within Ga0059261_0073at 65.404 kb on + strand, within Ga0059261_0073at 65.404 kb on + strand, within Ga0059261_0073at 65.405 kb on - strand, within Ga0059261_0073at 65.405 kb on - strand, within Ga0059261_0073at 65.405 kb on - strand, within Ga0059261_0073at 65.435 kb on + strandat 65.435 kb on + strandat 65.435 kb on + strandat 65.436 kb on - strandat 65.747 kb on + strandat 65.747 kb on + strand, within Ga0059261_0074at 65.748 kb on - strand, within Ga0059261_0074at 65.771 kb on + strand, within Ga0059261_0074at 65.771 kb on + strand, within Ga0059261_0074at 65.772 kb on - strand, within Ga0059261_0074at 65.772 kb on - strand, within Ga0059261_0074at 65.772 kb on - strand, within Ga0059261_0074at 65.772 kb on - strand, within Ga0059261_0074at 65.772 kb on - strand, within Ga0059261_0074at 65.772 kb on - strand, within Ga0059261_0074at 65.772 kb on - strand, within Ga0059261_0074at 66.179 kb on + strand, within Ga0059261_0074at 66.179 kb on + strand, within Ga0059261_0074at 66.179 kb on + strand, within Ga0059261_0074at 66.179 kb on + strand, within Ga0059261_0074at 66.179 kb on + strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.180 kb on - strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.308 kb on + strand, within Ga0059261_0074at 66.309 kb on - strand, within Ga0059261_0074at 66.309 kb on - strand, within Ga0059261_0074at 66.309 kb on - strand, within Ga0059261_0074at 66.309 kb on - strand, within Ga0059261_0074at 66.309 kb on - strand, within Ga0059261_0074at 66.309 kb on - strand, within Ga0059261_0074at 66.309 kb on - strandat 66.309 kb on - strand, within Ga0059261_0074at 66.309 kb on - strand, within Ga0059261_0074at 66.309 kb on - strand, within Ga0059261_0074at 66.320 kb on - strand, within Ga0059261_0074

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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63,949 + +0.6
63,949 + -0.1
63,949 + -0.3
63,949 + -0.2
63,955 + -0.1
63,955 + +1.0
63,955 + +0.9
63,955 + +0.2
63,955 + +1.1
63,956 - +1.6
63,956 - -1.9
63,956 - +0.1
63,991 + -0.0
63,992 - -0.7
64,039 - +1.3
64,039 - -0.5
64,103 + +0.5
64,103 + -0.1
64,104 - -1.0
64,104 - -0.7
64,104 - -0.9
64,104 - +0.1
64,104 - -0.1
64,104 - +0.1
64,164 - -0.1
64,411 - Ga0059261_0072 0.36 -0.8
64,750 + Ga0059261_0072 0.83 +0.3
64,750 + Ga0059261_0072 0.83 +0.4
64,750 + Ga0059261_0072 0.83 +1.1
64,750 + Ga0059261_0072 0.83 -0.9
64,751 - Ga0059261_0072 0.83 -0.5
64,751 - Ga0059261_0072 0.83 +0.4
64,751 - Ga0059261_0072 0.83 +0.1
64,751 - Ga0059261_0072 0.83 +0.1
64,751 - Ga0059261_0072 0.83 +0.6
64,980 - Ga0059261_0073 0.18 +1.0
65,078 + Ga0059261_0073 0.33 +0.6
65,078 + Ga0059261_0073 0.33 +0.2
65,079 - Ga0059261_0073 0.34 +1.1
65,117 - Ga0059261_0073 0.40 -0.1
65,117 - Ga0059261_0073 0.40 +0.3
65,404 + Ga0059261_0073 0.86 -0.8
65,404 + Ga0059261_0073 0.86 +0.5
65,404 + Ga0059261_0073 0.86 +0.5
65,404 + Ga0059261_0073 0.86 -0.7
65,405 - Ga0059261_0073 0.86 +0.5
65,405 - Ga0059261_0073 0.86 +0.3
65,405 - Ga0059261_0073 0.86 -0.4
65,435 + -0.3
65,435 + +0.3
65,435 + +0.2
65,436 - -0.5
65,747 + +1.6
65,747 + Ga0059261_0074 0.17 -1.0
65,748 - Ga0059261_0074 0.17 +0.6
65,771 + Ga0059261_0074 0.19 +0.0
65,771 + Ga0059261_0074 0.19 -2.3
65,772 - Ga0059261_0074 0.19 -1.4
65,772 - Ga0059261_0074 0.19 -0.8
65,772 - Ga0059261_0074 0.19 +0.4
65,772 - Ga0059261_0074 0.19 -0.1
65,772 - Ga0059261_0074 0.19 -0.9
65,772 - Ga0059261_0074 0.19 +0.2
65,772 - Ga0059261_0074 0.19 -0.4
66,179 + Ga0059261_0074 0.49 -0.8
66,179 + Ga0059261_0074 0.49 -0.0
66,179 + Ga0059261_0074 0.49 -0.2
66,179 + Ga0059261_0074 0.49 +0.1
66,179 + Ga0059261_0074 0.49 +0.0
66,180 - Ga0059261_0074 0.49 -0.0
66,180 - Ga0059261_0074 0.49 +0.5
66,180 - Ga0059261_0074 0.49 +0.3
66,180 - Ga0059261_0074 0.49 -0.9
66,180 - Ga0059261_0074 0.49 +0.5
66,180 - Ga0059261_0074 0.49 +0.3
66,180 - Ga0059261_0074 0.49 +0.5
66,180 - Ga0059261_0074 0.49 +0.2
66,180 - Ga0059261_0074 0.49 -1.2
66,180 - Ga0059261_0074 0.49 -2.1
66,180 - Ga0059261_0074 0.49 +0.7
66,308 + Ga0059261_0074 0.58 +0.3
66,308 + Ga0059261_0074 0.58 -1.0
66,308 + Ga0059261_0074 0.58 +0.6
66,308 + Ga0059261_0074 0.58 -0.2
66,308 + Ga0059261_0074 0.58 +0.0
66,308 + Ga0059261_0074 0.58 +0.1
66,308 + Ga0059261_0074 0.58 +0.0
66,308 + Ga0059261_0074 0.58 +0.6
66,308 + Ga0059261_0074 0.58 -0.2
66,309 - Ga0059261_0074 0.58 +0.3
66,309 - Ga0059261_0074 0.58 -0.1
66,309 - Ga0059261_0074 0.58 +0.3
66,309 - Ga0059261_0074 0.58 +0.6
66,309 - Ga0059261_0074 0.58 -0.0
66,309 - Ga0059261_0074 0.58 -0.1
66,309 - +0.9
66,309 - Ga0059261_0074 0.58 +0.5
66,309 - Ga0059261_0074 0.58 +0.4
66,309 - Ga0059261_0074 0.58 +0.1
66,320 - Ga0059261_0074 0.59 -0.8

Or see this region's nucleotide sequence