Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5208.1

Experiment: Xantho_MME_glucose_casamino

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5206.1 and Xcc-8004.5207.1 overlap by 4 nucleotidesXcc-8004.5207.1 and Xcc-8004.5208.1 overlap by 38 nucleotidesXcc-8004.5208.1 and Xcc-8004.5209.1 are separated by 236 nucleotides Xcc-8004.5206.1: Xcc-8004.5206.1 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 4,941,303 to 4,942,352 Xcc-8004.5206.1 Xcc-8004.5207.1: Xcc-8004.5207.1 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 4,942,349 to 4,943,221 Xcc-8004.5207.1 Xcc-8004.5208.1: Xcc-8004.5208.1 - FIG01210757: hypothetical protein, at 4,943,184 to 4,943,612 Xcc-8004.5208.1 Xcc-8004.5209.1: Xcc-8004.5209.1 - Putative predicted metal-dependent hydrolase, at 4,943,849 to 4,944,634 Xcc-8004.5209.1 Position (kb) 4943 4944Strain fitness (log2 ratio) -2 -1 0 1at 4942.571 kb on + strand, within Xcc-8004.5207.1at 4942.572 kb on - strand, within Xcc-8004.5207.1at 4942.572 kb on - strand, within Xcc-8004.5207.1at 4942.608 kb on + strand, within Xcc-8004.5207.1at 4942.609 kb on - strand, within Xcc-8004.5207.1at 4942.609 kb on - strand, within Xcc-8004.5207.1at 4942.609 kb on - strand, within Xcc-8004.5207.1at 4942.609 kb on - strand, within Xcc-8004.5207.1at 4942.609 kb on - strand, within Xcc-8004.5207.1at 4942.934 kb on + strand, within Xcc-8004.5207.1at 4942.934 kb on + strand, within Xcc-8004.5207.1at 4942.935 kb on - strand, within Xcc-8004.5207.1at 4942.935 kb on - strand, within Xcc-8004.5207.1at 4942.935 kb on - strand, within Xcc-8004.5207.1at 4943.017 kb on + strand, within Xcc-8004.5207.1at 4943.017 kb on + strand, within Xcc-8004.5207.1at 4943.017 kb on + strand, within Xcc-8004.5207.1at 4943.017 kb on + strand, within Xcc-8004.5207.1at 4943.018 kb on - strand, within Xcc-8004.5207.1at 4943.018 kb on - strand, within Xcc-8004.5207.1at 4943.018 kb on - strand, within Xcc-8004.5207.1at 4943.063 kb on + strand, within Xcc-8004.5207.1at 4943.063 kb on + strand, within Xcc-8004.5207.1at 4943.064 kb on - strand, within Xcc-8004.5207.1at 4943.064 kb on - strand, within Xcc-8004.5207.1at 4943.220 kb on - strandat 4943.220 kb on - strandat 4943.284 kb on + strand, within Xcc-8004.5208.1at 4943.313 kb on + strand, within Xcc-8004.5208.1at 4943.313 kb on + strand, within Xcc-8004.5208.1at 4943.313 kb on + strand, within Xcc-8004.5208.1at 4943.313 kb on + strand, within Xcc-8004.5208.1at 4943.313 kb on + strand, within Xcc-8004.5208.1at 4943.313 kb on + strand, within Xcc-8004.5208.1at 4943.313 kb on + strand, within Xcc-8004.5208.1at 4943.314 kb on - strand, within Xcc-8004.5208.1at 4943.314 kb on - strand, within Xcc-8004.5208.1at 4943.314 kb on - strand, within Xcc-8004.5208.1at 4943.314 kb on - strand, within Xcc-8004.5208.1at 4943.344 kb on + strand, within Xcc-8004.5208.1at 4943.344 kb on + strand, within Xcc-8004.5208.1at 4943.345 kb on - strand, within Xcc-8004.5208.1at 4943.345 kb on - strand, within Xcc-8004.5208.1at 4943.345 kb on - strand, within Xcc-8004.5208.1at 4943.345 kb on - strand, within Xcc-8004.5208.1at 4943.410 kb on + strand, within Xcc-8004.5208.1at 4943.410 kb on + strand, within Xcc-8004.5208.1at 4943.411 kb on - strand, within Xcc-8004.5208.1at 4943.411 kb on - strand, within Xcc-8004.5208.1at 4943.411 kb on - strand, within Xcc-8004.5208.1at 4943.411 kb on - strand, within Xcc-8004.5208.1at 4943.599 kb on - strandat 4943.611 kb on - strandat 4943.651 kb on + strandat 4943.651 kb on + strandat 4943.651 kb on + strandat 4943.651 kb on + strandat 4943.651 kb on + strandat 4943.651 kb on + strandat 4943.651 kb on + strandat 4943.652 kb on - strandat 4943.652 kb on - strandat 4943.818 kb on + strandat 4943.818 kb on + strandat 4943.819 kb on - strandat 4943.819 kb on - strandat 4943.819 kb on - strandat 4943.819 kb on - strandat 4943.819 kb on - strandat 4943.910 kb on + strandat 4943.910 kb on + strandat 4943.911 kb on - strandat 4943.911 kb on - strandat 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.016 kb on - strand, within Xcc-8004.5209.1at 4944.016 kb on - strand, within Xcc-8004.5209.1at 4944.151 kb on - strand, within Xcc-8004.5209.1at 4944.151 kb on - strand, within Xcc-8004.5209.1at 4944.151 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.289 kb on - strand, within Xcc-8004.5209.1at 4944.387 kb on + strand, within Xcc-8004.5209.1at 4944.388 kb on - strand, within Xcc-8004.5209.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_casamino
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4,942,571 + Xcc-8004.5207.1 0.25 -0.8
4,942,572 - Xcc-8004.5207.1 0.26 +1.4
4,942,572 - Xcc-8004.5207.1 0.26 +1.5
4,942,608 + Xcc-8004.5207.1 0.30 +0.3
4,942,609 - Xcc-8004.5207.1 0.30 -0.5
4,942,609 - Xcc-8004.5207.1 0.30 -0.9
4,942,609 - Xcc-8004.5207.1 0.30 +0.6
4,942,609 - Xcc-8004.5207.1 0.30 +0.0
4,942,609 - Xcc-8004.5207.1 0.30 -0.9
4,942,934 + Xcc-8004.5207.1 0.67 -0.8
4,942,934 + Xcc-8004.5207.1 0.67 -1.4
4,942,935 - Xcc-8004.5207.1 0.67 -0.7
4,942,935 - Xcc-8004.5207.1 0.67 +1.0
4,942,935 - Xcc-8004.5207.1 0.67 -0.7
4,943,017 + Xcc-8004.5207.1 0.77 +1.0
4,943,017 + Xcc-8004.5207.1 0.77 +0.2
4,943,017 + Xcc-8004.5207.1 0.77 +0.4
4,943,017 + Xcc-8004.5207.1 0.77 -0.4
4,943,018 - Xcc-8004.5207.1 0.77 -0.0
4,943,018 - Xcc-8004.5207.1 0.77 +0.3
4,943,018 - Xcc-8004.5207.1 0.77 -0.3
4,943,063 + Xcc-8004.5207.1 0.82 +0.5
4,943,063 + Xcc-8004.5207.1 0.82 -0.0
4,943,064 - Xcc-8004.5207.1 0.82 -0.5
4,943,064 - Xcc-8004.5207.1 0.82 +0.5
4,943,220 - +0.8
4,943,220 - +0.7
4,943,284 + Xcc-8004.5208.1 0.23 -0.4
4,943,313 + Xcc-8004.5208.1 0.30 +0.2
4,943,313 + Xcc-8004.5208.1 0.30 -0.6
4,943,313 + Xcc-8004.5208.1 0.30 -0.7
4,943,313 + Xcc-8004.5208.1 0.30 -0.3
4,943,313 + Xcc-8004.5208.1 0.30 +0.1
4,943,313 + Xcc-8004.5208.1 0.30 -0.0
4,943,313 + Xcc-8004.5208.1 0.30 -2.5
4,943,314 - Xcc-8004.5208.1 0.30 -1.2
4,943,314 - Xcc-8004.5208.1 0.30 -0.4
4,943,314 - Xcc-8004.5208.1 0.30 +1.6
4,943,314 - Xcc-8004.5208.1 0.30 -0.1
4,943,344 + Xcc-8004.5208.1 0.37 +0.8
4,943,344 + Xcc-8004.5208.1 0.37 +0.5
4,943,345 - Xcc-8004.5208.1 0.38 +0.6
4,943,345 - Xcc-8004.5208.1 0.38 -0.4
4,943,345 - Xcc-8004.5208.1 0.38 -1.9
4,943,345 - Xcc-8004.5208.1 0.38 -0.3
4,943,410 + Xcc-8004.5208.1 0.53 +0.2
4,943,410 + Xcc-8004.5208.1 0.53 -0.3
4,943,411 - Xcc-8004.5208.1 0.53 -0.2
4,943,411 - Xcc-8004.5208.1 0.53 -1.4
4,943,411 - Xcc-8004.5208.1 0.53 -0.5
4,943,411 - Xcc-8004.5208.1 0.53 +0.2
4,943,599 - +0.5
4,943,611 - -0.0
4,943,651 + -0.7
4,943,651 + -1.0
4,943,651 + +0.4
4,943,651 + -0.0
4,943,651 + -0.4
4,943,651 + -0.6
4,943,651 + -1.1
4,943,652 - -0.6
4,943,652 - -0.7
4,943,818 + -0.3
4,943,818 + -0.2
4,943,819 - -0.3
4,943,819 - -0.9
4,943,819 - +0.3
4,943,819 - -0.3
4,943,819 - +0.0
4,943,910 + -0.1
4,943,910 + -0.7
4,943,911 - -0.3
4,943,911 - -0.1
4,944,015 + Xcc-8004.5209.1 0.21 +0.4
4,944,015 + Xcc-8004.5209.1 0.21 -0.2
4,944,015 + Xcc-8004.5209.1 0.21 -1.8
4,944,015 + Xcc-8004.5209.1 0.21 +0.2
4,944,015 + Xcc-8004.5209.1 0.21 +0.0
4,944,016 - Xcc-8004.5209.1 0.21 +0.7
4,944,016 - Xcc-8004.5209.1 0.21 -0.9
4,944,151 - Xcc-8004.5209.1 0.38 -0.4
4,944,151 - Xcc-8004.5209.1 0.38 -0.9
4,944,151 - Xcc-8004.5209.1 0.38 -0.3
4,944,196 - Xcc-8004.5209.1 0.44 -0.6
4,944,196 - Xcc-8004.5209.1 0.44 -0.4
4,944,196 - Xcc-8004.5209.1 0.44 -0.5
4,944,196 - Xcc-8004.5209.1 0.44 +0.9
4,944,196 - Xcc-8004.5209.1 0.44 +0.3
4,944,289 - Xcc-8004.5209.1 0.56 -0.8
4,944,387 + Xcc-8004.5209.1 0.68 -0.6
4,944,388 - Xcc-8004.5209.1 0.69 -0.5

Or see this region's nucleotide sequence