Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3846.1

Experiment: Xantho_MME_glucose_casamino

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3844.1 and Xcc-8004.3845.1 overlap by 115 nucleotidesXcc-8004.3845.1 and Xcc-8004.3846.1 are separated by 128 nucleotidesXcc-8004.3846.1 and Xcc-8004.3847.1 are separated by 128 nucleotides Xcc-8004.3844.1: Xcc-8004.3844.1 - Mobile element protein, at 3,718,429 to 3,719,928 Xcc-8004.3844.1 Xcc-8004.3845.1: Xcc-8004.3845.1 - Mobile element protein, at 3,719,814 to 3,720,074 Xcc-8004.3845.1 Xcc-8004.3846.1: Xcc-8004.3846.1 - Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-), at 3,720,203 to 3,721,405 Xcc-8004.3846.1 Xcc-8004.3847.1: Xcc-8004.3847.1 - Membrane protease family protein BA0301, at 3,721,534 to 3,722,403 Xcc-8004.3847.1 Position (kb) 3720 3721 3722Strain fitness (log2 ratio) -1 0 1at 3719.954 kb on + strand, within Xcc-8004.3845.1at 3719.954 kb on + strand, within Xcc-8004.3845.1at 3719.954 kb on + strand, within Xcc-8004.3845.1at 3719.954 kb on + strand, within Xcc-8004.3845.1at 3719.954 kb on + strand, within Xcc-8004.3845.1at 3719.954 kb on + strand, within Xcc-8004.3845.1at 3719.955 kb on - strand, within Xcc-8004.3845.1at 3719.955 kb on - strand, within Xcc-8004.3845.1at 3719.955 kb on - strand, within Xcc-8004.3845.1at 3719.955 kb on - strand, within Xcc-8004.3845.1at 3719.972 kb on + strand, within Xcc-8004.3845.1at 3720.047 kb on + strand, within Xcc-8004.3845.1at 3720.047 kb on + strand, within Xcc-8004.3845.1at 3720.047 kb on + strand, within Xcc-8004.3845.1at 3720.047 kb on + strand, within Xcc-8004.3845.1at 3720.047 kb on + strand, within Xcc-8004.3845.1at 3720.048 kb on - strand, within Xcc-8004.3845.1at 3720.048 kb on - strand, within Xcc-8004.3845.1at 3720.048 kb on - strand, within Xcc-8004.3845.1at 3720.048 kb on - strand, within Xcc-8004.3845.1at 3720.058 kb on + strandat 3720.058 kb on + strandat 3720.195 kb on + strandat 3720.195 kb on + strandat 3720.195 kb on + strandat 3720.195 kb on + strandat 3720.195 kb on + strandat 3720.196 kb on - strandat 3720.196 kb on - strandat 3720.200 kb on + strandat 3720.201 kb on - strandat 3720.410 kb on + strand, within Xcc-8004.3846.1at 3720.714 kb on + strand, within Xcc-8004.3846.1at 3720.865 kb on - strand, within Xcc-8004.3846.1at 3720.865 kb on - strand, within Xcc-8004.3846.1at 3720.865 kb on - strand, within Xcc-8004.3846.1at 3721.275 kb on + strand, within Xcc-8004.3846.1at 3721.276 kb on - strand, within Xcc-8004.3846.1at 3721.500 kb on - strandat 3721.616 kb on - strandat 3721.714 kb on + strand, within Xcc-8004.3847.1at 3721.714 kb on + strand, within Xcc-8004.3847.1at 3721.715 kb on - strand, within Xcc-8004.3847.1at 3721.715 kb on - strand, within Xcc-8004.3847.1at 3721.762 kb on + strand, within Xcc-8004.3847.1at 3721.762 kb on + strand, within Xcc-8004.3847.1at 3721.762 kb on + strand, within Xcc-8004.3847.1at 3721.762 kb on + strand, within Xcc-8004.3847.1at 3721.762 kb on + strand, within Xcc-8004.3847.1at 3721.762 kb on + strand, within Xcc-8004.3847.1at 3721.763 kb on - strand, within Xcc-8004.3847.1at 3721.763 kb on - strand, within Xcc-8004.3847.1at 3721.763 kb on - strand, within Xcc-8004.3847.1at 3721.763 kb on - strand, within Xcc-8004.3847.1at 3721.763 kb on - strand, within Xcc-8004.3847.1at 3721.810 kb on + strand, within Xcc-8004.3847.1at 3721.810 kb on + strand, within Xcc-8004.3847.1at 3721.810 kb on + strand, within Xcc-8004.3847.1at 3721.810 kb on + strand, within Xcc-8004.3847.1at 3721.810 kb on + strand, within Xcc-8004.3847.1at 3721.811 kb on - strand, within Xcc-8004.3847.1at 3721.811 kb on - strand, within Xcc-8004.3847.1at 3721.811 kb on - strand, within Xcc-8004.3847.1at 3721.811 kb on - strand, within Xcc-8004.3847.1at 3721.842 kb on + strand, within Xcc-8004.3847.1at 3721.945 kb on + strand, within Xcc-8004.3847.1at 3721.945 kb on + strand, within Xcc-8004.3847.1at 3721.945 kb on + strand, within Xcc-8004.3847.1at 3721.946 kb on - strand, within Xcc-8004.3847.1at 3721.946 kb on - strand, within Xcc-8004.3847.1at 3721.946 kb on - strand, within Xcc-8004.3847.1at 3721.946 kb on - strand, within Xcc-8004.3847.1at 3721.961 kb on - strand, within Xcc-8004.3847.1at 3722.023 kb on + strand, within Xcc-8004.3847.1at 3722.325 kb on + strandat 3722.325 kb on + strandat 3722.326 kb on - strandat 3722.398 kb on + strandat 3722.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_casamino
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3,719,954 + Xcc-8004.3845.1 0.54 +0.3
3,719,954 + Xcc-8004.3845.1 0.54 -1.3
3,719,954 + Xcc-8004.3845.1 0.54 -0.7
3,719,954 + Xcc-8004.3845.1 0.54 +0.9
3,719,954 + Xcc-8004.3845.1 0.54 -0.1
3,719,954 + Xcc-8004.3845.1 0.54 -0.2
3,719,955 - Xcc-8004.3845.1 0.54 +0.1
3,719,955 - Xcc-8004.3845.1 0.54 +0.4
3,719,955 - Xcc-8004.3845.1 0.54 +0.1
3,719,955 - Xcc-8004.3845.1 0.54 -0.5
3,719,972 + Xcc-8004.3845.1 0.61 -0.7
3,720,047 + Xcc-8004.3845.1 0.89 -0.5
3,720,047 + Xcc-8004.3845.1 0.89 -0.7
3,720,047 + Xcc-8004.3845.1 0.89 -0.3
3,720,047 + Xcc-8004.3845.1 0.89 +0.4
3,720,047 + Xcc-8004.3845.1 0.89 +0.6
3,720,048 - Xcc-8004.3845.1 0.90 +0.1
3,720,048 - Xcc-8004.3845.1 0.90 +0.3
3,720,048 - Xcc-8004.3845.1 0.90 +0.1
3,720,048 - Xcc-8004.3845.1 0.90 +0.3
3,720,058 + -0.6
3,720,058 + +0.9
3,720,195 + +0.2
3,720,195 + +0.5
3,720,195 + -0.6
3,720,195 + -0.1
3,720,195 + -0.1
3,720,196 - -0.0
3,720,196 - +0.2
3,720,200 + -0.5
3,720,201 - +0.4
3,720,410 + Xcc-8004.3846.1 0.17 -0.1
3,720,714 + Xcc-8004.3846.1 0.42 -0.9
3,720,865 - Xcc-8004.3846.1 0.55 +0.2
3,720,865 - Xcc-8004.3846.1 0.55 -0.1
3,720,865 - Xcc-8004.3846.1 0.55 -0.4
3,721,275 + Xcc-8004.3846.1 0.89 -0.2
3,721,276 - Xcc-8004.3846.1 0.89 -0.5
3,721,500 - +0.3
3,721,616 - -0.2
3,721,714 + Xcc-8004.3847.1 0.21 -0.1
3,721,714 + Xcc-8004.3847.1 0.21 +0.4
3,721,715 - Xcc-8004.3847.1 0.21 -0.8
3,721,715 - Xcc-8004.3847.1 0.21 +0.5
3,721,762 + Xcc-8004.3847.1 0.26 +0.5
3,721,762 + Xcc-8004.3847.1 0.26 -0.5
3,721,762 + Xcc-8004.3847.1 0.26 +0.1
3,721,762 + Xcc-8004.3847.1 0.26 +0.7
3,721,762 + Xcc-8004.3847.1 0.26 -0.3
3,721,762 + Xcc-8004.3847.1 0.26 -0.7
3,721,763 - Xcc-8004.3847.1 0.26 -0.9
3,721,763 - Xcc-8004.3847.1 0.26 -1.1
3,721,763 - Xcc-8004.3847.1 0.26 +0.1
3,721,763 - Xcc-8004.3847.1 0.26 -0.4
3,721,763 - Xcc-8004.3847.1 0.26 +0.2
3,721,810 + Xcc-8004.3847.1 0.32 -0.0
3,721,810 + Xcc-8004.3847.1 0.32 +1.1
3,721,810 + Xcc-8004.3847.1 0.32 -0.6
3,721,810 + Xcc-8004.3847.1 0.32 -0.4
3,721,810 + Xcc-8004.3847.1 0.32 -0.7
3,721,811 - Xcc-8004.3847.1 0.32 +0.3
3,721,811 - Xcc-8004.3847.1 0.32 -1.1
3,721,811 - Xcc-8004.3847.1 0.32 -0.4
3,721,811 - Xcc-8004.3847.1 0.32 -0.3
3,721,842 + Xcc-8004.3847.1 0.35 +0.3
3,721,945 + Xcc-8004.3847.1 0.47 -0.4
3,721,945 + Xcc-8004.3847.1 0.47 +0.5
3,721,945 + Xcc-8004.3847.1 0.47 -0.4
3,721,946 - Xcc-8004.3847.1 0.47 +0.3
3,721,946 - Xcc-8004.3847.1 0.47 -0.3
3,721,946 - Xcc-8004.3847.1 0.47 -0.3
3,721,946 - Xcc-8004.3847.1 0.47 -0.9
3,721,961 - Xcc-8004.3847.1 0.49 +0.2
3,722,023 + Xcc-8004.3847.1 0.56 +0.6
3,722,325 + +0.5
3,722,325 + +0.1
3,722,326 - -0.1
3,722,398 + -0.3
3,722,399 - +0.1

Or see this region's nucleotide sequence