Experiment: Xantho_MME_glucose_casamino
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3404.1 and Xcc-8004.3405.1 are separated by 35 nucleotides Xcc-8004.3405.1 and Xcc-8004.3408.1 are separated by 252 nucleotides Xcc-8004.3408.1 and Xcc-8004.3409.1 are separated by 139 nucleotides
Xcc-8004.3404.1: Xcc-8004.3404.1 - FIG01211089: hypothetical protein, at 3,293,691 to 3,295,055
Xcc-8004.3404.1
Xcc-8004.3405.1: Xcc-8004.3405.1 - Adenylosuccinate lyase (EC 4.3.2.2), at 3,295,091 to 3,296,458
Xcc-8004.3405.1
Xcc-8004.3408.1: Xcc-8004.3408.1 - FIG01210869: hypothetical protein, at 3,296,711 to 3,297,211
Xcc-8004.3408.1
Xcc-8004.3409.1: Xcc-8004.3409.1 - putative; ORF located using Glimmer/Genemark, at 3,297,351 to 3,297,974
Xcc-8004.3409.1
Position (kb) 3295
3296
3297 Strain fitness (log2 ratio) -2
-1
0
1 at 3294.165 kb on + strand, within Xcc-8004.3404.1 at 3294.166 kb on - strand, within Xcc-8004.3404.1 at 3294.166 kb on - strand, within Xcc-8004.3404.1 at 3294.166 kb on - strand, within Xcc-8004.3404.1 at 3294.174 kb on + strand, within Xcc-8004.3404.1 at 3294.174 kb on + strand, within Xcc-8004.3404.1 at 3294.175 kb on - strand, within Xcc-8004.3404.1 at 3294.186 kb on + strand, within Xcc-8004.3404.1 at 3294.186 kb on + strand, within Xcc-8004.3404.1 at 3294.186 kb on + strand, within Xcc-8004.3404.1 at 3294.186 kb on + strand, within Xcc-8004.3404.1 at 3294.186 kb on + strand, within Xcc-8004.3404.1 at 3294.186 kb on + strand, within Xcc-8004.3404.1 at 3294.187 kb on - strand, within Xcc-8004.3404.1 at 3294.187 kb on - strand, within Xcc-8004.3404.1 at 3294.187 kb on - strand, within Xcc-8004.3404.1 at 3294.187 kb on - strand, within Xcc-8004.3404.1 at 3294.187 kb on - strand, within Xcc-8004.3404.1 at 3294.187 kb on - strand, within Xcc-8004.3404.1 at 3294.187 kb on - strand, within Xcc-8004.3404.1 at 3294.229 kb on + strand, within Xcc-8004.3404.1 at 3294.229 kb on + strand, within Xcc-8004.3404.1 at 3294.230 kb on - strand, within Xcc-8004.3404.1 at 3294.230 kb on - strand, within Xcc-8004.3404.1 at 3294.230 kb on - strand, within Xcc-8004.3404.1 at 3294.230 kb on - strand, within Xcc-8004.3404.1 at 3294.230 kb on - strand, within Xcc-8004.3404.1 at 3294.230 kb on - strand, within Xcc-8004.3404.1 at 3294.274 kb on - strand, within Xcc-8004.3404.1 at 3294.370 kb on + strand, within Xcc-8004.3404.1 at 3294.477 kb on + strand, within Xcc-8004.3404.1 at 3294.478 kb on - strand, within Xcc-8004.3404.1 at 3294.478 kb on - strand, within Xcc-8004.3404.1 at 3294.517 kb on + strand, within Xcc-8004.3404.1 at 3294.517 kb on + strand, within Xcc-8004.3404.1 at 3294.517 kb on + strand, within Xcc-8004.3404.1 at 3294.518 kb on - strand, within Xcc-8004.3404.1 at 3294.518 kb on - strand, within Xcc-8004.3404.1 at 3294.518 kb on - strand, within Xcc-8004.3404.1 at 3294.518 kb on - strand, within Xcc-8004.3404.1 at 3294.518 kb on - strand, within Xcc-8004.3404.1 at 3295.053 kb on + strand at 3295.053 kb on + strand at 3295.053 kb on + strand at 3295.054 kb on - strand at 3295.054 kb on - strand at 3296.498 kb on + strand at 3296.499 kb on - strand at 3296.499 kb on - strand at 3296.499 kb on - strand at 3296.678 kb on - strand at 3296.875 kb on + strand, within Xcc-8004.3408.1 at 3296.875 kb on + strand, within Xcc-8004.3408.1 at 3296.922 kb on + strand, within Xcc-8004.3408.1 at 3296.922 kb on + strand, within Xcc-8004.3408.1 at 3296.923 kb on - strand, within Xcc-8004.3408.1 at 3296.923 kb on - strand, within Xcc-8004.3408.1 at 3297.162 kb on - strand at 3297.209 kb on + strand at 3297.209 kb on + strand at 3297.210 kb on - strand at 3297.210 kb on - strand at 3297.210 kb on - strand at 3297.210 kb on - strand at 3297.210 kb on - strand at 3297.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_casamino remove 3,294,165 + Xcc-8004.3404.1 0.35 -1.2 3,294,166 - Xcc-8004.3404.1 0.35 +0.2 3,294,166 - Xcc-8004.3404.1 0.35 -0.0 3,294,166 - Xcc-8004.3404.1 0.35 +0.7 3,294,174 + Xcc-8004.3404.1 0.35 -0.4 3,294,174 + Xcc-8004.3404.1 0.35 -0.1 3,294,175 - Xcc-8004.3404.1 0.35 -1.7 3,294,186 + Xcc-8004.3404.1 0.36 -0.6 3,294,186 + Xcc-8004.3404.1 0.36 +1.1 3,294,186 + Xcc-8004.3404.1 0.36 +0.6 3,294,186 + Xcc-8004.3404.1 0.36 -1.2 3,294,186 + Xcc-8004.3404.1 0.36 +0.1 3,294,186 + Xcc-8004.3404.1 0.36 -0.2 3,294,187 - Xcc-8004.3404.1 0.36 +0.2 3,294,187 - Xcc-8004.3404.1 0.36 -1.2 3,294,187 - Xcc-8004.3404.1 0.36 -0.1 3,294,187 - Xcc-8004.3404.1 0.36 -1.8 3,294,187 - Xcc-8004.3404.1 0.36 -0.4 3,294,187 - Xcc-8004.3404.1 0.36 -0.5 3,294,187 - Xcc-8004.3404.1 0.36 -0.3 3,294,229 + Xcc-8004.3404.1 0.39 -0.3 3,294,229 + Xcc-8004.3404.1 0.39 +0.7 3,294,230 - Xcc-8004.3404.1 0.39 -1.9 3,294,230 - Xcc-8004.3404.1 0.39 +0.5 3,294,230 - Xcc-8004.3404.1 0.39 +1.6 3,294,230 - Xcc-8004.3404.1 0.39 -0.3 3,294,230 - Xcc-8004.3404.1 0.39 +0.3 3,294,230 - Xcc-8004.3404.1 0.39 +0.3 3,294,274 - Xcc-8004.3404.1 0.43 +0.0 3,294,370 + Xcc-8004.3404.1 0.50 -0.0 3,294,477 + Xcc-8004.3404.1 0.58 +0.2 3,294,478 - Xcc-8004.3404.1 0.58 +0.5 3,294,478 - Xcc-8004.3404.1 0.58 +0.2 3,294,517 + Xcc-8004.3404.1 0.61 +1.1 3,294,517 + Xcc-8004.3404.1 0.61 +0.2 3,294,517 + Xcc-8004.3404.1 0.61 -1.0 3,294,518 - Xcc-8004.3404.1 0.61 -0.6 3,294,518 - Xcc-8004.3404.1 0.61 +0.7 3,294,518 - Xcc-8004.3404.1 0.61 +0.6 3,294,518 - Xcc-8004.3404.1 0.61 -0.5 3,294,518 - Xcc-8004.3404.1 0.61 +0.2 3,295,053 + -1.0 3,295,053 + -0.4 3,295,053 + +0.4 3,295,054 - -0.5 3,295,054 - -0.2 3,296,498 + -1.1 3,296,499 - -1.3 3,296,499 - +1.0 3,296,499 - +0.5 3,296,678 - +1.4 3,296,875 + Xcc-8004.3408.1 0.33 -0.3 3,296,875 + Xcc-8004.3408.1 0.33 +0.3 3,296,922 + Xcc-8004.3408.1 0.42 -1.0 3,296,922 + Xcc-8004.3408.1 0.42 -0.1 3,296,923 - Xcc-8004.3408.1 0.42 +1.3 3,296,923 - Xcc-8004.3408.1 0.42 +0.3 3,297,162 - -0.1 3,297,209 + -0.2 3,297,209 + -0.1 3,297,210 - -0.1 3,297,210 - +1.1 3,297,210 - -0.7 3,297,210 - +0.6 3,297,210 - -0.9 3,297,210 - +0.7
Or see this region's nucleotide sequence