Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3785

Experiment: Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3784 and Ga0059261_3785 are separated by 66 nucleotidesGa0059261_3785 and Ga0059261_3786 are separated by 131 nucleotides Ga0059261_3784: Ga0059261_3784 - DNA mismatch repair protein MutS, at 3,884,097 to 3,886,694 _3784 Ga0059261_3785: Ga0059261_3785 - hypothetical protein, at 3,886,761 to 3,887,501 _3785 Ga0059261_3786: Ga0059261_3786 - Malic enzyme, at 3,887,633 to 3,889,891 _3786 Position (kb) 3886 3887 3888Strain fitness (log2 ratio) -1 0 1at 3885.935 kb on + strand, within Ga0059261_3784at 3885.935 kb on + strand, within Ga0059261_3784at 3885.985 kb on + strand, within Ga0059261_3784at 3885.985 kb on + strand, within Ga0059261_3784at 3885.985 kb on + strand, within Ga0059261_3784at 3885.986 kb on - strand, within Ga0059261_3784at 3885.986 kb on - strand, within Ga0059261_3784at 3886.239 kb on + strand, within Ga0059261_3784at 3886.239 kb on + strand, within Ga0059261_3784at 3886.239 kb on + strand, within Ga0059261_3784at 3886.239 kb on + strand, within Ga0059261_3784at 3886.239 kb on + strand, within Ga0059261_3784at 3886.240 kb on - strand, within Ga0059261_3784at 3886.240 kb on - strand, within Ga0059261_3784at 3886.240 kb on - strand, within Ga0059261_3784at 3886.471 kb on + strandat 3886.597 kb on + strandat 3886.615 kb on + strandat 3886.615 kb on + strandat 3886.616 kb on - strandat 3886.616 kb on - strandat 3886.616 kb on - strandat 3886.657 kb on + strandat 3886.657 kb on + strandat 3886.657 kb on + strandat 3886.657 kb on + strandat 3886.657 kb on + strandat 3886.658 kb on - strandat 3886.658 kb on - strandat 3886.864 kb on + strand, within Ga0059261_3785at 3886.864 kb on + strand, within Ga0059261_3785at 3886.864 kb on + strand, within Ga0059261_3785at 3886.864 kb on + strand, within Ga0059261_3785at 3887.084 kb on - strand, within Ga0059261_3785at 3887.126 kb on + strand, within Ga0059261_3785at 3887.126 kb on + strand, within Ga0059261_3785at 3887.126 kb on + strand, within Ga0059261_3785at 3887.191 kb on + strand, within Ga0059261_3785at 3887.192 kb on - strand, within Ga0059261_3785at 3887.260 kb on + strand, within Ga0059261_3785at 3887.260 kb on + strand, within Ga0059261_3785at 3887.260 kb on + strand, within Ga0059261_3785at 3887.819 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0005 mg/ml
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3,885,935 + Ga0059261_3784 0.71 +0.8
3,885,935 + Ga0059261_3784 0.71 +0.1
3,885,985 + Ga0059261_3784 0.73 -0.0
3,885,985 + Ga0059261_3784 0.73 -1.6
3,885,985 + Ga0059261_3784 0.73 -0.3
3,885,986 - Ga0059261_3784 0.73 +1.0
3,885,986 - Ga0059261_3784 0.73 +0.1
3,886,239 + Ga0059261_3784 0.82 +0.4
3,886,239 + Ga0059261_3784 0.82 +0.9
3,886,239 + Ga0059261_3784 0.82 +1.2
3,886,239 + Ga0059261_3784 0.82 +0.0
3,886,239 + Ga0059261_3784 0.82 +0.2
3,886,240 - Ga0059261_3784 0.82 +0.6
3,886,240 - Ga0059261_3784 0.82 +1.1
3,886,240 - Ga0059261_3784 0.82 -0.7
3,886,471 + +1.2
3,886,597 + +0.2
3,886,615 + +1.3
3,886,615 + +0.4
3,886,616 - -0.7
3,886,616 - +0.0
3,886,616 - +0.5
3,886,657 + +1.3
3,886,657 + +1.2
3,886,657 + -1.4
3,886,657 + -0.6
3,886,657 + +0.6
3,886,658 - +0.0
3,886,658 - -0.4
3,886,864 + Ga0059261_3785 0.14 +0.2
3,886,864 + Ga0059261_3785 0.14 +1.7
3,886,864 + Ga0059261_3785 0.14 +0.5
3,886,864 + Ga0059261_3785 0.14 +0.3
3,887,084 - Ga0059261_3785 0.44 -0.1
3,887,126 + Ga0059261_3785 0.49 +1.7
3,887,126 + Ga0059261_3785 0.49 +1.4
3,887,126 + Ga0059261_3785 0.49 -1.1
3,887,191 + Ga0059261_3785 0.58 +0.0
3,887,192 - Ga0059261_3785 0.58 +0.3
3,887,260 + Ga0059261_3785 0.67 +0.0
3,887,260 + Ga0059261_3785 0.67 +0.1
3,887,260 + Ga0059261_3785 0.67 -0.0
3,887,819 + -0.8

Or see this region's nucleotide sequence