Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1670

Experiment: Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1669 and Ga0059261_1670 overlap by 4 nucleotidesGa0059261_1670 and Ga0059261_1671 overlap by 4 nucleotidesGa0059261_1671 and Ga0059261_1672 overlap by 4 nucleotides Ga0059261_1669: Ga0059261_1669 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,771,175 to 1,772,329 _1669 Ga0059261_1670: Ga0059261_1670 - Putative translation initiation inhibitor, yjgF family, at 1,772,326 to 1,772,712 _1670 Ga0059261_1671: Ga0059261_1671 - Uncharacterized protein, putative amidase, at 1,772,709 to 1,773,467 _1671 Ga0059261_1672: Ga0059261_1672 - Putative amidotransferase, at 1,773,464 to 1,774,327 _1672 Position (kb) 1772 1773Strain fitness (log2 ratio) -2 -1 0 1 2at 1771.353 kb on + strand, within Ga0059261_1669at 1771.353 kb on + strand, within Ga0059261_1669at 1771.353 kb on + strand, within Ga0059261_1669at 1771.353 kb on + strand, within Ga0059261_1669at 1771.354 kb on - strand, within Ga0059261_1669at 1771.397 kb on + strand, within Ga0059261_1669at 1771.661 kb on + strandat 1771.661 kb on + strand, within Ga0059261_1669at 1771.662 kb on - strand, within Ga0059261_1669at 1771.676 kb on + strand, within Ga0059261_1669at 1771.676 kb on + strand, within Ga0059261_1669at 1771.677 kb on - strand, within Ga0059261_1669at 1771.795 kb on + strand, within Ga0059261_1669at 1771.796 kb on - strand, within Ga0059261_1669at 1771.796 kb on - strand, within Ga0059261_1669at 1771.796 kb on - strand, within Ga0059261_1669at 1771.796 kb on - strand, within Ga0059261_1669at 1771.796 kb on - strand, within Ga0059261_1669at 1771.890 kb on - strand, within Ga0059261_1669at 1771.890 kb on - strand, within Ga0059261_1669at 1771.890 kb on - strand, within Ga0059261_1669at 1771.890 kb on - strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.946 kb on + strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strand, within Ga0059261_1669at 1771.947 kb on - strandat 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.948 kb on + strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.949 kb on - strand, within Ga0059261_1669at 1771.952 kb on + strand, within Ga0059261_1669at 1771.952 kb on + strand, within Ga0059261_1669at 1771.952 kb on + strand, within Ga0059261_1669at 1771.952 kb on + strand, within Ga0059261_1669at 1771.952 kb on + strand, within Ga0059261_1669at 1771.953 kb on - strand, within Ga0059261_1669at 1771.953 kb on - strand, within Ga0059261_1669at 1771.953 kb on - strand, within Ga0059261_1669at 1771.953 kb on - strand, within Ga0059261_1669at 1771.953 kb on - strand, within Ga0059261_1669at 1771.953 kb on - strand, within Ga0059261_1669at 1771.953 kb on - strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.126 kb on + strand, within Ga0059261_1669at 1772.127 kb on - strand, within Ga0059261_1669at 1772.127 kb on - strand, within Ga0059261_1669at 1772.127 kb on - strand, within Ga0059261_1669at 1772.127 kb on - strand, within Ga0059261_1669at 1772.127 kb on - strand, within Ga0059261_1669at 1772.237 kb on + strandat 1772.237 kb on + strandat 1772.238 kb on - strandat 1772.238 kb on - strandat 1772.301 kb on - strandat 1772.378 kb on - strand, within Ga0059261_1670at 1772.378 kb on - strand, within Ga0059261_1670at 1772.379 kb on + strand, within Ga0059261_1670at 1772.379 kb on + strand, within Ga0059261_1670at 1772.379 kb on + strand, within Ga0059261_1670at 1772.379 kb on + strand, within Ga0059261_1670at 1772.379 kb on + strand, within Ga0059261_1670at 1772.379 kb on + strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.380 kb on - strand, within Ga0059261_1670at 1772.566 kb on + strand, within Ga0059261_1670at 1772.566 kb on + strand, within Ga0059261_1670at 1772.566 kb on + strand, within Ga0059261_1670at 1772.566 kb on + strand, within Ga0059261_1670at 1772.566 kb on + strand, within Ga0059261_1670at 1772.567 kb on - strand, within Ga0059261_1670at 1772.567 kb on - strand, within Ga0059261_1670at 1772.567 kb on - strand, within Ga0059261_1670at 1772.567 kb on - strand, within Ga0059261_1670at 1772.567 kb on - strand, within Ga0059261_1670at 1772.567 kb on - strand, within Ga0059261_1670at 1772.608 kb on + strand, within Ga0059261_1670at 1772.608 kb on + strand, within Ga0059261_1670at 1772.608 kb on + strand, within Ga0059261_1670at 1772.608 kb on + strand, within Ga0059261_1670at 1772.608 kb on + strand, within Ga0059261_1670at 1772.609 kb on - strand, within Ga0059261_1670at 1772.609 kb on - strand, within Ga0059261_1670at 1772.609 kb on - strand, within Ga0059261_1670at 1772.609 kb on - strand, within Ga0059261_1670at 1772.609 kb on - strand, within Ga0059261_1670at 1772.609 kb on - strand, within Ga0059261_1670at 1772.689 kb on + strandat 1772.973 kb on + strand, within Ga0059261_1671at 1772.973 kb on + strand, within Ga0059261_1671at 1772.973 kb on + strandat 1772.973 kb on + strand, within Ga0059261_1671at 1772.973 kb on + strand, within Ga0059261_1671at 1772.973 kb on + strand, within Ga0059261_1671at 1772.974 kb on - strand, within Ga0059261_1671at 1772.974 kb on - strand, within Ga0059261_1671at 1772.974 kb on - strand, within Ga0059261_1671at 1772.974 kb on - strand, within Ga0059261_1671at 1772.974 kb on - strandat 1772.974 kb on - strand, within Ga0059261_1671at 1772.974 kb on - strand, within Ga0059261_1671at 1772.974 kb on - strand, within Ga0059261_1671at 1772.974 kb on - strand, within Ga0059261_1671at 1772.974 kb on - strand, within Ga0059261_1671at 1772.975 kb on + strand, within Ga0059261_1671at 1772.975 kb on + strand, within Ga0059261_1671at 1772.975 kb on + strand, within Ga0059261_1671at 1772.976 kb on - strand, within Ga0059261_1671at 1772.976 kb on - strand, within Ga0059261_1671at 1772.976 kb on - strand, within Ga0059261_1671at 1772.976 kb on - strand, within Ga0059261_1671at 1772.976 kb on - strand, within Ga0059261_1671at 1772.976 kb on - strand, within Ga0059261_1671at 1772.976 kb on - strand, within Ga0059261_1671at 1772.976 kb on - strand, within Ga0059261_1671at 1773.453 kb on - strandat 1773.465 kb on + strandat 1773.465 kb on + strandat 1773.465 kb on + strandat 1773.606 kb on + strand, within Ga0059261_1672at 1773.606 kb on + strand, within Ga0059261_1672at 1773.607 kb on - strand, within Ga0059261_1672at 1773.624 kb on + strand, within Ga0059261_1672at 1773.624 kb on + strand, within Ga0059261_1672at 1773.625 kb on - strand, within Ga0059261_1672

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0005 mg/ml
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1,771,353 + Ga0059261_1669 0.15 -0.3
1,771,353 + Ga0059261_1669 0.15 -0.4
1,771,353 + Ga0059261_1669 0.15 +0.1
1,771,353 + Ga0059261_1669 0.15 -0.2
1,771,354 - Ga0059261_1669 0.15 -0.5
1,771,397 + Ga0059261_1669 0.19 -0.2
1,771,661 + +1.5
1,771,661 + Ga0059261_1669 0.42 -0.4
1,771,662 - Ga0059261_1669 0.42 -0.4
1,771,676 + Ga0059261_1669 0.43 +0.5
1,771,676 + Ga0059261_1669 0.43 +0.5
1,771,677 - Ga0059261_1669 0.43 +0.3
1,771,795 + Ga0059261_1669 0.54 -0.0
1,771,796 - Ga0059261_1669 0.54 +0.0
1,771,796 - Ga0059261_1669 0.54 +0.5
1,771,796 - Ga0059261_1669 0.54 +0.6
1,771,796 - Ga0059261_1669 0.54 +0.4
1,771,796 - Ga0059261_1669 0.54 -1.0
1,771,890 - Ga0059261_1669 0.62 +0.6
1,771,890 - Ga0059261_1669 0.62 -0.2
1,771,890 - Ga0059261_1669 0.62 -0.6
1,771,890 - Ga0059261_1669 0.62 -1.9
1,771,946 + Ga0059261_1669 0.67 +0.4
1,771,946 + Ga0059261_1669 0.67 +0.3
1,771,946 + Ga0059261_1669 0.67 +0.4
1,771,946 + Ga0059261_1669 0.67 +1.9
1,771,946 + Ga0059261_1669 0.67 +0.2
1,771,946 + Ga0059261_1669 0.67 -0.2
1,771,946 + Ga0059261_1669 0.67 +0.4
1,771,946 + Ga0059261_1669 0.67 -0.1
1,771,946 + Ga0059261_1669 0.67 +0.1
1,771,946 + Ga0059261_1669 0.67 +0.2
1,771,947 - Ga0059261_1669 0.67 +0.2
1,771,947 - Ga0059261_1669 0.67 -0.3
1,771,947 - Ga0059261_1669 0.67 +1.3
1,771,947 - Ga0059261_1669 0.67 +0.3
1,771,947 - Ga0059261_1669 0.67 -0.1
1,771,947 - Ga0059261_1669 0.67 -0.6
1,771,947 - Ga0059261_1669 0.67 -0.7
1,771,947 - Ga0059261_1669 0.67 +1.3
1,771,947 - Ga0059261_1669 0.67 +0.3
1,771,947 - +0.9
1,771,948 + Ga0059261_1669 0.67 -0.5
1,771,948 + Ga0059261_1669 0.67 +0.3
1,771,948 + Ga0059261_1669 0.67 +1.3
1,771,948 + Ga0059261_1669 0.67 +0.3
1,771,948 + Ga0059261_1669 0.67 -0.1
1,771,948 + Ga0059261_1669 0.67 -0.9
1,771,948 + Ga0059261_1669 0.67 -0.6
1,771,948 + Ga0059261_1669 0.67 -1.6
1,771,948 + Ga0059261_1669 0.67 +0.6
1,771,948 + Ga0059261_1669 0.67 -0.7
1,771,948 + Ga0059261_1669 0.67 -0.0
1,771,948 + Ga0059261_1669 0.67 -0.1
1,771,948 + Ga0059261_1669 0.67 +0.4
1,771,948 + Ga0059261_1669 0.67 +0.0
1,771,948 + Ga0059261_1669 0.67 -0.2
1,771,949 - Ga0059261_1669 0.67 +0.5
1,771,949 - Ga0059261_1669 0.67 -0.3
1,771,949 - Ga0059261_1669 0.67 +0.2
1,771,949 - Ga0059261_1669 0.67 +0.4
1,771,949 - Ga0059261_1669 0.67 -0.2
1,771,949 - Ga0059261_1669 0.67 -0.2
1,771,949 - Ga0059261_1669 0.67 +0.1
1,771,949 - Ga0059261_1669 0.67 -2.5
1,771,949 - Ga0059261_1669 0.67 +0.1
1,771,949 - Ga0059261_1669 0.67 +0.0
1,771,949 - Ga0059261_1669 0.67 -0.5
1,771,949 - Ga0059261_1669 0.67 +0.2
1,771,949 - Ga0059261_1669 0.67 -0.7
1,771,949 - Ga0059261_1669 0.67 -0.3
1,771,949 - Ga0059261_1669 0.67 -0.6
1,771,949 - Ga0059261_1669 0.67 +0.9
1,771,949 - Ga0059261_1669 0.67 +0.2
1,771,949 - Ga0059261_1669 0.67 +0.3
1,771,949 - Ga0059261_1669 0.67 +2.1
1,771,952 + Ga0059261_1669 0.67 -0.2
1,771,952 + Ga0059261_1669 0.67 -0.2
1,771,952 + Ga0059261_1669 0.67 +1.1
1,771,952 + Ga0059261_1669 0.67 -0.1
1,771,952 + Ga0059261_1669 0.67 +0.0
1,771,953 - Ga0059261_1669 0.67 -0.0
1,771,953 - Ga0059261_1669 0.67 -0.0
1,771,953 - Ga0059261_1669 0.67 +0.7
1,771,953 - Ga0059261_1669 0.67 +0.3
1,771,953 - Ga0059261_1669 0.67 -0.3
1,771,953 - Ga0059261_1669 0.67 +0.6
1,771,953 - Ga0059261_1669 0.67 -0.5
1,772,126 + Ga0059261_1669 0.82 -0.3
1,772,126 + Ga0059261_1669 0.82 -1.0
1,772,126 + Ga0059261_1669 0.82 -0.3
1,772,126 + Ga0059261_1669 0.82 -1.6
1,772,126 + Ga0059261_1669 0.82 +0.6
1,772,126 + Ga0059261_1669 0.82 -0.4
1,772,126 + Ga0059261_1669 0.82 +0.9
1,772,126 + Ga0059261_1669 0.82 -0.5
1,772,126 + Ga0059261_1669 0.82 +1.0
1,772,126 + Ga0059261_1669 0.82 +0.2
1,772,127 - Ga0059261_1669 0.82 +0.2
1,772,127 - Ga0059261_1669 0.82 -0.5
1,772,127 - Ga0059261_1669 0.82 +0.9
1,772,127 - Ga0059261_1669 0.82 +0.9
1,772,127 - Ga0059261_1669 0.82 -0.1
1,772,237 + +0.2
1,772,237 + -0.2
1,772,238 - -0.4
1,772,238 - -1.5
1,772,301 - -0.7
1,772,378 - Ga0059261_1670 0.13 -1.0
1,772,378 - Ga0059261_1670 0.13 +0.5
1,772,379 + Ga0059261_1670 0.14 -0.5
1,772,379 + Ga0059261_1670 0.14 +0.5
1,772,379 + Ga0059261_1670 0.14 -0.9
1,772,379 + Ga0059261_1670 0.14 +0.1
1,772,379 + Ga0059261_1670 0.14 -0.4
1,772,379 + Ga0059261_1670 0.14 -0.2
1,772,380 - Ga0059261_1670 0.14 -0.4
1,772,380 - Ga0059261_1670 0.14 -0.5
1,772,380 - Ga0059261_1670 0.14 -0.2
1,772,380 - Ga0059261_1670 0.14 -0.2
1,772,380 - Ga0059261_1670 0.14 -0.0
1,772,380 - Ga0059261_1670 0.14 +0.7
1,772,380 - Ga0059261_1670 0.14 -0.4
1,772,380 - Ga0059261_1670 0.14 -0.1
1,772,380 - Ga0059261_1670 0.14 +0.1
1,772,380 - Ga0059261_1670 0.14 -1.1
1,772,566 + Ga0059261_1670 0.62 +0.9
1,772,566 + Ga0059261_1670 0.62 +0.3
1,772,566 + Ga0059261_1670 0.62 +0.4
1,772,566 + Ga0059261_1670 0.62 +0.4
1,772,566 + Ga0059261_1670 0.62 +0.8
1,772,567 - Ga0059261_1670 0.62 -2.5
1,772,567 - Ga0059261_1670 0.62 +0.6
1,772,567 - Ga0059261_1670 0.62 +0.7
1,772,567 - Ga0059261_1670 0.62 +0.1
1,772,567 - Ga0059261_1670 0.62 +0.9
1,772,567 - Ga0059261_1670 0.62 +0.9
1,772,608 + Ga0059261_1670 0.73 +0.5
1,772,608 + Ga0059261_1670 0.73 -0.2
1,772,608 + Ga0059261_1670 0.73 -0.4
1,772,608 + Ga0059261_1670 0.73 -0.1
1,772,608 + Ga0059261_1670 0.73 -2.1
1,772,609 - Ga0059261_1670 0.73 +1.4
1,772,609 - Ga0059261_1670 0.73 +0.2
1,772,609 - Ga0059261_1670 0.73 +0.1
1,772,609 - Ga0059261_1670 0.73 +0.5
1,772,609 - Ga0059261_1670 0.73 +0.5
1,772,609 - Ga0059261_1670 0.73 +0.0
1,772,689 + -0.0
1,772,973 + Ga0059261_1671 0.35 -0.4
1,772,973 + Ga0059261_1671 0.35 -0.8
1,772,973 + -1.1
1,772,973 + Ga0059261_1671 0.35 -0.0
1,772,973 + Ga0059261_1671 0.35 +1.4
1,772,973 + Ga0059261_1671 0.35 -0.9
1,772,974 - Ga0059261_1671 0.35 +0.5
1,772,974 - Ga0059261_1671 0.35 +0.1
1,772,974 - Ga0059261_1671 0.35 -0.7
1,772,974 - Ga0059261_1671 0.35 -1.5
1,772,974 - -0.7
1,772,974 - Ga0059261_1671 0.35 -0.6
1,772,974 - Ga0059261_1671 0.35 -1.1
1,772,974 - Ga0059261_1671 0.35 +0.1
1,772,974 - Ga0059261_1671 0.35 -0.0
1,772,974 - Ga0059261_1671 0.35 -0.1
1,772,975 + Ga0059261_1671 0.35 -1.3
1,772,975 + Ga0059261_1671 0.35 +0.2
1,772,975 + Ga0059261_1671 0.35 +0.2
1,772,976 - Ga0059261_1671 0.35 -2.1
1,772,976 - Ga0059261_1671 0.35 +0.5
1,772,976 - Ga0059261_1671 0.35 +0.6
1,772,976 - Ga0059261_1671 0.35 +0.9
1,772,976 - Ga0059261_1671 0.35 +0.3
1,772,976 - Ga0059261_1671 0.35 -1.0
1,772,976 - Ga0059261_1671 0.35 +0.0
1,772,976 - Ga0059261_1671 0.35 +0.1
1,773,453 - +0.9
1,773,465 + -0.3
1,773,465 + -0.9
1,773,465 + +0.6
1,773,606 + Ga0059261_1672 0.16 -0.5
1,773,606 + Ga0059261_1672 0.16 -0.3
1,773,607 - Ga0059261_1672 0.17 -0.4
1,773,624 + Ga0059261_1672 0.19 -0.5
1,773,624 + Ga0059261_1672 0.19 +0.3
1,773,625 - Ga0059261_1672 0.19 -0.7

Or see this region's nucleotide sequence