Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1497

Experiment: Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1496 and Ga0059261_1497 overlap by 4 nucleotidesGa0059261_1497 and Ga0059261_1498 are separated by 1 nucleotides Ga0059261_1496: Ga0059261_1496 - uroporphyrin-III C-methyltransferase, at 1,581,075 to 1,581,872 _1496 Ga0059261_1497: Ga0059261_1497 - required for sulfate utilization, putative electron source for sulfite reductase CysI (from data), at 1,581,869 to 1,582,165 _1497 Ga0059261_1498: Ga0059261_1498 - Sulfite reductase, beta subunit (hemoprotein), at 1,582,167 to 1,583,798 _1498 Position (kb) 1581 1582 1583Strain fitness (log2 ratio) -2 -1 0 1 2at 1580.904 kb on + strandat 1580.904 kb on + strandat 1580.904 kb on + strandat 1580.904 kb on + strandat 1580.904 kb on + strandat 1580.904 kb on + strandat 1580.905 kb on - strandat 1580.905 kb on - strandat 1580.905 kb on - strandat 1580.998 kb on + strandat 1580.999 kb on - strandat 1581.597 kb on + strand, within Ga0059261_1496at 1581.597 kb on + strand, within Ga0059261_1496at 1581.597 kb on + strand, within Ga0059261_1496at 1581.597 kb on + strand, within Ga0059261_1496at 1581.597 kb on + strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1581.598 kb on - strand, within Ga0059261_1496at 1582.025 kb on + strand, within Ga0059261_1497at 1582.025 kb on + strand, within Ga0059261_1497at 1582.025 kb on + strand, within Ga0059261_1497at 1582.025 kb on + strand, within Ga0059261_1497at 1582.025 kb on + strand, within Ga0059261_1497at 1582.026 kb on - strand, within Ga0059261_1497at 1582.026 kb on - strand, within Ga0059261_1497at 1582.026 kb on - strand, within Ga0059261_1497at 1582.026 kb on - strand, within Ga0059261_1497at 1582.072 kb on + strand, within Ga0059261_1497at 1582.072 kb on + strand, within Ga0059261_1497at 1582.072 kb on + strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.073 kb on - strand, within Ga0059261_1497at 1582.176 kb on + strandat 1582.176 kb on + strandat 1582.176 kb on + strandat 1582.176 kb on + strandat 1582.185 kb on + strandat 1582.186 kb on - strandat 1582.186 kb on - strandat 1582.186 kb on - strandat 1582.302 kb on + strandat 1582.303 kb on - strandat 1582.303 kb on - strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.320 kb on + strandat 1582.321 kb on - strandat 1582.321 kb on - strandat 1582.321 kb on - strandat 1582.321 kb on - strandat 1582.398 kb on + strand, within Ga0059261_1498at 1582.398 kb on + strand, within Ga0059261_1498at 1582.399 kb on - strand, within Ga0059261_1498at 1582.399 kb on - strand, within Ga0059261_1498at 1582.411 kb on - strand, within Ga0059261_1498at 1582.443 kb on + strand, within Ga0059261_1498at 1582.443 kb on + strand, within Ga0059261_1498at 1582.443 kb on + strand, within Ga0059261_1498at 1582.443 kb on + strand, within Ga0059261_1498at 1582.444 kb on - strand, within Ga0059261_1498at 1582.444 kb on - strand, within Ga0059261_1498at 1582.444 kb on - strand, within Ga0059261_1498at 1582.445 kb on + strand, within Ga0059261_1498at 1582.445 kb on + strand, within Ga0059261_1498at 1582.446 kb on - strand, within Ga0059261_1498at 1582.446 kb on - strandat 1582.558 kb on - strand, within Ga0059261_1498at 1582.647 kb on + strand, within Ga0059261_1498at 1582.648 kb on - strand, within Ga0059261_1498at 1582.648 kb on - strand, within Ga0059261_1498at 1582.648 kb on - strandat 1582.767 kb on + strand, within Ga0059261_1498at 1582.767 kb on + strand, within Ga0059261_1498at 1582.768 kb on - strand, within Ga0059261_1498at 1582.848 kb on + strand, within Ga0059261_1498at 1582.848 kb on + strandat 1582.848 kb on + strand, within Ga0059261_1498at 1582.848 kb on + strand, within Ga0059261_1498at 1582.849 kb on - strand, within Ga0059261_1498at 1582.849 kb on - strand, within Ga0059261_1498at 1582.850 kb on + strandat 1582.850 kb on + strand, within Ga0059261_1498at 1582.872 kb on + strand, within Ga0059261_1498at 1582.872 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.950 kb on + strand, within Ga0059261_1498at 1582.950 kb on + strand, within Ga0059261_1498at 1582.951 kb on - strand, within Ga0059261_1498at 1583.148 kb on + strand, within Ga0059261_1498

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0005 mg/ml
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1,580,904 + -2.0
1,580,904 + +1.0
1,580,904 + +0.3
1,580,904 + -0.1
1,580,904 + +0.1
1,580,904 + -0.1
1,580,905 - +0.0
1,580,905 - -0.1
1,580,905 - -0.3
1,580,998 + -0.3
1,580,999 - -0.8
1,581,597 + Ga0059261_1496 0.65 -1.4
1,581,597 + Ga0059261_1496 0.65 +0.5
1,581,597 + Ga0059261_1496 0.65 +1.0
1,581,597 + Ga0059261_1496 0.65 -0.6
1,581,597 + Ga0059261_1496 0.65 +0.1
1,581,598 - Ga0059261_1496 0.66 -1.1
1,581,598 - Ga0059261_1496 0.66 +0.2
1,581,598 - Ga0059261_1496 0.66 +0.2
1,581,598 - Ga0059261_1496 0.66 +0.1
1,581,598 - Ga0059261_1496 0.66 -0.5
1,582,025 + Ga0059261_1497 0.53 +0.3
1,582,025 + Ga0059261_1497 0.53 -1.1
1,582,025 + Ga0059261_1497 0.53 +0.3
1,582,025 + Ga0059261_1497 0.53 -0.3
1,582,025 + Ga0059261_1497 0.53 +0.2
1,582,026 - Ga0059261_1497 0.53 +0.4
1,582,026 - Ga0059261_1497 0.53 +0.2
1,582,026 - Ga0059261_1497 0.53 -0.4
1,582,026 - Ga0059261_1497 0.53 +0.9
1,582,072 + Ga0059261_1497 0.68 +0.7
1,582,072 + Ga0059261_1497 0.68 +0.9
1,582,072 + Ga0059261_1497 0.68 -1.3
1,582,073 - Ga0059261_1497 0.69 +0.3
1,582,073 - Ga0059261_1497 0.69 +0.2
1,582,073 - Ga0059261_1497 0.69 -0.0
1,582,073 - Ga0059261_1497 0.69 +1.0
1,582,073 - Ga0059261_1497 0.69 +0.1
1,582,176 + +0.9
1,582,176 + +0.4
1,582,176 + +1.4
1,582,176 + -0.7
1,582,185 + +0.4
1,582,186 - -0.7
1,582,186 - +0.3
1,582,186 - -0.9
1,582,302 + +0.9
1,582,303 - -0.1
1,582,303 - -0.7
1,582,320 + -1.5
1,582,320 + +0.3
1,582,320 + -1.2
1,582,320 + -0.2
1,582,320 + +0.3
1,582,320 + -0.6
1,582,320 + +0.7
1,582,320 + +0.7
1,582,320 + +2.6
1,582,320 + -1.6
1,582,321 - +0.3
1,582,321 - +0.6
1,582,321 - +0.3
1,582,321 - -1.7
1,582,398 + Ga0059261_1498 0.14 -0.4
1,582,398 + Ga0059261_1498 0.14 -0.6
1,582,399 - Ga0059261_1498 0.14 +0.3
1,582,399 - Ga0059261_1498 0.14 -0.6
1,582,411 - Ga0059261_1498 0.15 +0.7
1,582,443 + Ga0059261_1498 0.17 +0.6
1,582,443 + Ga0059261_1498 0.17 -2.3
1,582,443 + Ga0059261_1498 0.17 -1.1
1,582,443 + Ga0059261_1498 0.17 +0.7
1,582,444 - Ga0059261_1498 0.17 +0.9
1,582,444 - Ga0059261_1498 0.17 -1.1
1,582,444 - Ga0059261_1498 0.17 +0.9
1,582,445 + Ga0059261_1498 0.17 +0.0
1,582,445 + Ga0059261_1498 0.17 -1.1
1,582,446 - Ga0059261_1498 0.17 +0.2
1,582,446 - +2.4
1,582,558 - Ga0059261_1498 0.24 +0.2
1,582,647 + Ga0059261_1498 0.29 -0.2
1,582,648 - Ga0059261_1498 0.29 -0.1
1,582,648 - Ga0059261_1498 0.29 -1.5
1,582,648 - -0.5
1,582,767 + Ga0059261_1498 0.37 -0.5
1,582,767 + Ga0059261_1498 0.37 +0.7
1,582,768 - Ga0059261_1498 0.37 -0.3
1,582,848 + Ga0059261_1498 0.42 -1.1
1,582,848 + -0.5
1,582,848 + Ga0059261_1498 0.42 -1.6
1,582,848 + Ga0059261_1498 0.42 +0.7
1,582,849 - Ga0059261_1498 0.42 -0.6
1,582,849 - Ga0059261_1498 0.42 -1.5
1,582,850 + -1.5
1,582,850 + Ga0059261_1498 0.42 +2.1
1,582,872 + Ga0059261_1498 0.43 -1.3
1,582,872 + Ga0059261_1498 0.43 -0.1
1,582,898 + Ga0059261_1498 0.45 -0.1
1,582,898 + Ga0059261_1498 0.45 -0.6
1,582,898 + Ga0059261_1498 0.45 +0.2
1,582,898 + Ga0059261_1498 0.45 +0.9
1,582,899 - Ga0059261_1498 0.45 -1.9
1,582,899 - Ga0059261_1498 0.45 +1.1
1,582,899 - Ga0059261_1498 0.45 -0.1
1,582,899 - Ga0059261_1498 0.45 -0.2
1,582,899 - Ga0059261_1498 0.45 -0.6
1,582,902 + Ga0059261_1498 0.45 -0.6
1,582,902 + Ga0059261_1498 0.45 -0.1
1,582,902 + Ga0059261_1498 0.45 -0.4
1,582,902 + Ga0059261_1498 0.45 -0.8
1,582,902 + Ga0059261_1498 0.45 -0.1
1,582,902 + Ga0059261_1498 0.45 -1.6
1,582,902 + Ga0059261_1498 0.45 +1.9
1,582,902 + Ga0059261_1498 0.45 -0.1
1,582,902 + Ga0059261_1498 0.45 -0.6
1,582,903 - Ga0059261_1498 0.45 +0.4
1,582,903 - Ga0059261_1498 0.45 -0.1
1,582,903 - Ga0059261_1498 0.45 +0.5
1,582,903 - Ga0059261_1498 0.45 +0.3
1,582,950 + Ga0059261_1498 0.48 +0.1
1,582,950 + Ga0059261_1498 0.48 -0.2
1,582,951 - Ga0059261_1498 0.48 +0.1
1,583,148 + Ga0059261_1498 0.60 +0.0

Or see this region's nucleotide sequence