Experiment: Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0823 and Ga0059261_0824 are separated by 94 nucleotides Ga0059261_0824 and Ga0059261_0825 are separated by 105 nucleotides Ga0059261_0825 and Ga0059261_0826 are separated by 152 nucleotides Ga0059261_0826 and Ga0059261_0827 are separated by 217 nucleotides
Ga0059261_0823: Ga0059261_0823 - hypothetical protein, at 864,379 to 864,885
_0823
Ga0059261_0824: Ga0059261_0824 - DNA-binding regulatory protein, YebC/PmpR family, at 864,980 to 865,723
_0824
Ga0059261_0825: Ga0059261_0825 - Uncharacterized conserved protein, at 865,829 to 866,155
_0825
Ga0059261_0826: Ga0059261_0826 - Uncharacterized protein conserved in bacteria, at 866,308 to 866,547
_0826
Ga0059261_0827: Ga0059261_0827 - hypothetical protein, at 866,765 to 867,160
_0827
Position (kb)
865
866
867 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 865.018 kb on - strand at 865.483 kb on - strand, within Ga0059261_0824 at 865.759 kb on - strand at 865.759 kb on - strand at 865.788 kb on + strand at 865.803 kb on + strand at 865.803 kb on + strand at 865.804 kb on - strand at 865.822 kb on + strand at 865.822 kb on + strand at 865.823 kb on - strand at 865.823 kb on - strand at 865.823 kb on - strand at 865.905 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.008 kb on - strand, within Ga0059261_0825 at 866.008 kb on - strand, within Ga0059261_0825 at 866.106 kb on + strand, within Ga0059261_0825 at 866.157 kb on + strand at 866.226 kb on + strand at 866.226 kb on + strand at 866.227 kb on - strand at 866.227 kb on - strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.563 kb on - strand at 866.563 kb on - strand at 866.642 kb on + strand at 866.668 kb on + strand at 866.681 kb on + strand at 866.682 kb on - strand at 866.682 kb on - strand at 866.693 kb on - strand at 866.693 kb on - strand at 866.693 kb on - strand at 866.693 kb on - strand at 866.872 kb on + strand, within Ga0059261_0827 at 866.873 kb on - strand, within Ga0059261_0827 at 867.060 kb on - strand, within Ga0059261_0827 at 867.152 kb on + strand at 867.152 kb on + strand at 867.152 kb on + strand at 867.152 kb on + strand at 867.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0005 mg/ml remove 865,018 - -1.8 865,483 - Ga0059261_0824 0.68 -0.6 865,759 - -0.1 865,759 - +0.1 865,788 + -0.2 865,803 + +1.5 865,803 + -0.4 865,804 - +0.4 865,822 + -0.1 865,822 + +0.1 865,823 - +0.8 865,823 - -0.2 865,823 - -0.4 865,905 + Ga0059261_0825 0.23 -0.2 866,007 + Ga0059261_0825 0.54 +1.4 866,007 + Ga0059261_0825 0.54 -0.3 866,007 + Ga0059261_0825 0.54 -0.5 866,007 + Ga0059261_0825 0.54 +0.2 866,007 + Ga0059261_0825 0.54 -0.3 866,008 - Ga0059261_0825 0.55 -1.1 866,008 - Ga0059261_0825 0.55 -0.5 866,106 + Ga0059261_0825 0.85 -1.1 866,157 + -0.1 866,226 + +0.2 866,226 + +2.8 866,227 - -0.5 866,227 - -0.0 866,309 + -0.2 866,309 + -0.2 866,309 + -0.8 866,309 + +0.0 866,309 + -0.5 866,309 + +0.6 866,309 + -0.1 866,309 + +0.4 866,310 - +0.4 866,310 - -0.7 866,310 - -0.2 866,310 - +0.4 866,310 - +0.4 866,310 - -1.0 866,563 - -1.7 866,563 - +0.3 866,642 + -0.5 866,668 + +0.4 866,681 + -0.8 866,682 - +0.5 866,682 - -1.8 866,693 - +0.3 866,693 - -0.7 866,693 - +1.5 866,693 - +0.2 866,872 + Ga0059261_0827 0.27 +1.7 866,873 - Ga0059261_0827 0.27 -0.3 867,060 - Ga0059261_0827 0.74 -0.6 867,152 + -0.0 867,152 + +0.6 867,152 + -0.0 867,152 + +0.2 867,153 - +0.3
Or see this region's nucleotide sequence