Experiment: Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0410 and Ga0059261_0411 are separated by 601 nucleotides Ga0059261_0411 and Ga0059261_0412 are separated by 346 nucleotides Ga0059261_0412 and Ga0059261_0413 are separated by 78 nucleotides
Ga0059261_0410: Ga0059261_0410 - Antirestriction protein, at 393,294 to 394,379
_0410
Ga0059261_0411: Ga0059261_0411 - Uncharacterized conserved protein, at 394,981 to 395,514
_0411
Ga0059261_0412: Ga0059261_0412 - DNA-binding HTH domain-containing proteins, at 395,861 to 396,163
_0412
Ga0059261_0413: Ga0059261_0413 - N-acyl-L-homoserine lactone synthetase, at 396,242 to 396,859
_0413
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 394.027 kb on + strand, within Ga0059261_0410 at 394.028 kb on - strand, within Ga0059261_0410 at 394.291 kb on + strand at 394.291 kb on + strand at 394.291 kb on + strand at 394.291 kb on + strand at 394.292 kb on - strand at 394.640 kb on + strand at 394.640 kb on + strand at 394.641 kb on - strand at 394.757 kb on + strand at 394.757 kb on + strand at 394.757 kb on + strand at 394.758 kb on - strand at 394.758 kb on - strand at 394.758 kb on - strand at 394.758 kb on - strand at 394.758 kb on - strand at 394.758 kb on - strand at 394.758 kb on - strand at 394.840 kb on - strand at 394.840 kb on - strand at 394.840 kb on - strand at 395.021 kb on + strand at 395.320 kb on - strand, within Ga0059261_0411 at 395.320 kb on - strand, within Ga0059261_0411 at 395.393 kb on + strand, within Ga0059261_0411 at 395.595 kb on + strand at 395.595 kb on + strand at 395.596 kb on - strand at 395.596 kb on - strand at 395.647 kb on + strand at 395.648 kb on - strand at 395.648 kb on - strand at 395.661 kb on + strand at 395.662 kb on - strand at 395.662 kb on - strand at 395.662 kb on - strand at 395.662 kb on - strand at 395.671 kb on + strand at 395.671 kb on + strand at 395.672 kb on - strand at 395.673 kb on + strand at 395.674 kb on - strand at 395.674 kb on - strand at 395.674 kb on - strand at 395.674 kb on - strand at 395.674 kb on - strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.830 kb on + strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 395.831 kb on - strand at 396.081 kb on - strand, within Ga0059261_0412 at 396.081 kb on - strand, within Ga0059261_0412 at 396.132 kb on + strand, within Ga0059261_0412 at 396.132 kb on + strand, within Ga0059261_0412 at 396.132 kb on + strand, within Ga0059261_0412 at 396.164 kb on + strand at 396.164 kb on + strand at 396.164 kb on + strand at 396.164 kb on + strand at 396.164 kb on + strand at 396.164 kb on + strand at 396.165 kb on - strand at 396.165 kb on - strand at 396.165 kb on - strand at 396.165 kb on - strand at 396.219 kb on + strand at 396.219 kb on + strand at 396.220 kb on - strand at 396.220 kb on - strand at 396.220 kb on - strand at 396.368 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.404 kb on + strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.405 kb on - strand, within Ga0059261_0413 at 396.491 kb on + strand, within Ga0059261_0413 at 396.491 kb on + strand, within Ga0059261_0413 at 396.492 kb on - strand, within Ga0059261_0413
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0005 mg/ml remove 394,027 + Ga0059261_0410 0.67 -0.0 394,028 - Ga0059261_0410 0.68 -0.1 394,291 + -0.7 394,291 + -0.4 394,291 + -0.4 394,291 + +2.9 394,292 - -0.2 394,640 + +1.2 394,640 + -0.0 394,641 - -0.8 394,757 + -0.8 394,757 + +1.0 394,757 + -0.2 394,758 - -0.4 394,758 - -0.2 394,758 - -0.2 394,758 - -0.5 394,758 - +0.0 394,758 - -0.4 394,758 - +0.0 394,840 - +0.3 394,840 - -1.8 394,840 - -0.3 395,021 + -0.8 395,320 - Ga0059261_0411 0.63 +1.1 395,320 - Ga0059261_0411 0.63 +0.7 395,393 + Ga0059261_0411 0.77 +0.1 395,595 + -0.1 395,595 + +0.2 395,596 - +1.2 395,596 - +1.2 395,647 + +0.4 395,648 - -0.5 395,648 - -0.5 395,661 + -0.4 395,662 - +0.8 395,662 - +0.5 395,662 - -0.3 395,662 - -0.6 395,671 + +0.2 395,671 + -0.5 395,672 - -0.1 395,673 + -0.0 395,674 - -0.2 395,674 - +0.2 395,674 - +0.2 395,674 - +1.0 395,674 - -0.1 395,830 + -0.6 395,830 + -0.4 395,830 + -0.4 395,830 + -0.5 395,830 + -0.0 395,830 + +0.2 395,830 + +0.6 395,830 + -0.3 395,830 + +0.2 395,830 + -0.2 395,831 - -0.1 395,831 - -0.0 395,831 - -0.0 395,831 - -0.8 395,831 - -0.8 395,831 - -0.6 395,831 - +0.4 395,831 - +0.2 395,831 - +1.1 395,831 - -1.1 396,081 - Ga0059261_0412 0.73 +0.1 396,081 - Ga0059261_0412 0.73 +1.1 396,132 + Ga0059261_0412 0.89 +0.2 396,132 + Ga0059261_0412 0.89 +1.6 396,132 + Ga0059261_0412 0.89 -0.4 396,164 + +0.8 396,164 + -0.5 396,164 + +0.3 396,164 + +0.8 396,164 + -0.8 396,164 + -0.2 396,165 - +0.1 396,165 - +0.1 396,165 - -0.4 396,165 - -0.6 396,219 + -0.1 396,219 + -1.0 396,220 - -0.0 396,220 - -0.1 396,220 - +0.2 396,368 + Ga0059261_0413 0.20 +1.2 396,404 + Ga0059261_0413 0.26 +0.0 396,404 + Ga0059261_0413 0.26 -0.8 396,404 + Ga0059261_0413 0.26 -0.5 396,404 + Ga0059261_0413 0.26 -0.7 396,404 + Ga0059261_0413 0.26 -0.2 396,405 - Ga0059261_0413 0.26 +1.6 396,405 - Ga0059261_0413 0.26 +0.2 396,405 - Ga0059261_0413 0.26 -0.1 396,405 - Ga0059261_0413 0.26 +0.4 396,405 - Ga0059261_0413 0.26 +0.1 396,491 + Ga0059261_0413 0.40 -0.2 396,491 + Ga0059261_0413 0.40 -0.7 396,492 - Ga0059261_0413 0.40 +0.8
Or see this region's nucleotide sequence