Experiment: Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0265 and Ga0059261_0266 are separated by 201 nucleotides Ga0059261_0266 and Ga0059261_0267 are separated by 73 nucleotides Ga0059261_0267 and Ga0059261_0268 are separated by 112 nucleotides Ga0059261_0268 and Ga0059261_0269 are separated by 83 nucleotides
Ga0059261_0265: Ga0059261_0265 - 3-oxoacid CoA-transferase, A subunit, at 254,913 to 255,620
_0265
Ga0059261_0266: Ga0059261_0266 - hypothetical protein, at 255,822 to 256,046
_0266
Ga0059261_0267: Ga0059261_0267 - Predicted membrane protein, at 256,120 to 256,389
_0267
Ga0059261_0268: Ga0059261_0268 - Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily, at 256,502 to 257,026
_0268
Ga0059261_0269: Ga0059261_0269 - Dioxygenases related to 2-nitropropane dioxygenase, at 257,110 to 258,093
_0269
Position (kb) 256
257
258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 255.560 kb on + strand at 255.560 kb on + strand at 255.560 kb on + strand at 255.561 kb on - strand at 255.561 kb on - strand at 255.561 kb on - strand at 255.561 kb on - strand at 255.607 kb on + strand at 255.607 kb on + strand at 255.607 kb on + strand at 255.608 kb on - strand at 255.608 kb on - strand at 255.608 kb on - strand at 255.787 kb on + strand at 255.787 kb on + strand at 255.792 kb on + strand at 255.846 kb on + strand, within Ga0059261_0266 at 255.846 kb on + strand, within Ga0059261_0266 at 255.846 kb on + strand, within Ga0059261_0266 at 256.024 kb on + strand at 256.024 kb on + strand at 256.024 kb on + strand at 256.025 kb on - strand at 256.025 kb on - strand at 256.025 kb on - strand at 256.025 kb on - strand at 256.025 kb on - strand at 256.044 kb on + strand at 256.301 kb on + strand, within Ga0059261_0267 at 256.372 kb on + strand at 256.372 kb on + strand at 256.373 kb on - strand at 256.435 kb on + strand at 256.435 kb on + strand at 256.435 kb on + strand at 256.436 kb on - strand at 256.436 kb on - strand at 256.436 kb on - strand at 256.436 kb on - strand at 256.436 kb on - strand at 256.436 kb on - strand at 256.436 kb on - strand at 256.437 kb on + strand at 256.437 kb on + strand at 256.437 kb on + strand at 256.437 kb on + strand at 256.437 kb on + strand at 256.437 kb on + strand at 256.438 kb on - strand at 256.438 kb on - strand at 256.438 kb on - strand at 256.438 kb on - strand at 256.438 kb on - strand at 256.438 kb on - strand at 256.512 kb on - strand at 256.940 kb on - strand, within Ga0059261_0268 at 256.972 kb on + strand, within Ga0059261_0268 at 256.972 kb on + strand, within Ga0059261_0268 at 256.972 kb on + strand, within Ga0059261_0268 at 256.972 kb on + strand, within Ga0059261_0268 at 256.973 kb on - strand, within Ga0059261_0268 at 256.973 kb on - strand, within Ga0059261_0268 at 256.973 kb on - strand, within Ga0059261_0268 at 256.973 kb on - strand, within Ga0059261_0268 at 256.973 kb on - strand, within Ga0059261_0268 at 256.973 kb on - strand, within Ga0059261_0268 at 256.973 kb on - strand, within Ga0059261_0268 at 256.976 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.977 kb on - strand at 256.977 kb on - strand at 256.977 kb on - strand at 256.977 kb on - strand at 256.977 kb on - strand at 256.977 kb on - strand at 257.053 kb on + strand at 257.110 kb on - strand at 257.110 kb on - strand at 257.110 kb on - strand at 257.466 kb on - strand, within Ga0059261_0269 at 257.712 kb on + strand, within Ga0059261_0269 at 257.713 kb on + strand, within Ga0059261_0269 at 257.713 kb on + strand, within Ga0059261_0269 at 257.713 kb on + strand, within Ga0059261_0269 at 257.713 kb on + strand, within Ga0059261_0269 at 257.714 kb on - strand, within Ga0059261_0269 at 257.714 kb on - strand at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.764 kb on + strand, within Ga0059261_0269 at 257.765 kb on - strand, within Ga0059261_0269 at 257.765 kb on - strand, within Ga0059261_0269 at 257.765 kb on - strand, within Ga0059261_0269 at 257.807 kb on - strand, within Ga0059261_0269 at 257.807 kb on - strand, within Ga0059261_0269 at 257.807 kb on - strand, within Ga0059261_0269 at 257.807 kb on - strand, within Ga0059261_0269 at 257.807 kb on - strand, within Ga0059261_0269 at 257.839 kb on + strand, within Ga0059261_0269 at 257.839 kb on + strand, within Ga0059261_0269 at 257.839 kb on + strand, within Ga0059261_0269 at 257.839 kb on + strand, within Ga0059261_0269 at 257.840 kb on - strand, within Ga0059261_0269 at 257.840 kb on - strand, within Ga0059261_0269 at 257.840 kb on - strand, within Ga0059261_0269
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0005 mg/ml remove 255,560 + +0.4 255,560 + +0.7 255,560 + -1.0 255,561 - +0.0 255,561 - +0.7 255,561 - -1.3 255,561 - +0.5 255,607 + +0.0 255,607 + -1.3 255,607 + +0.1 255,608 - -0.2 255,608 - -2.1 255,608 - +0.3 255,787 + -1.0 255,787 + +1.2 255,792 + -0.4 255,846 + Ga0059261_0266 0.11 +0.4 255,846 + Ga0059261_0266 0.11 -1.3 255,846 + Ga0059261_0266 0.11 +0.0 256,024 + +0.4 256,024 + -0.1 256,024 + -0.3 256,025 - +0.4 256,025 - +1.6 256,025 - +1.1 256,025 - -0.1 256,025 - -0.2 256,044 + +0.5 256,301 + Ga0059261_0267 0.67 -0.3 256,372 + +0.9 256,372 + -0.3 256,373 - +0.1 256,435 + +0.4 256,435 + -0.2 256,435 + -0.3 256,436 - -1.3 256,436 - +0.1 256,436 - +2.1 256,436 - -1.3 256,436 - +1.4 256,436 - -0.0 256,436 - -0.4 256,437 + -0.2 256,437 + -1.6 256,437 + -0.0 256,437 + +0.6 256,437 + -2.3 256,437 + -0.9 256,438 - +0.7 256,438 - -0.2 256,438 - +0.3 256,438 - +0.6 256,438 - +0.5 256,438 - -0.3 256,512 - -0.2 256,940 - Ga0059261_0268 0.83 +0.2 256,972 + Ga0059261_0268 0.90 +1.1 256,972 + Ga0059261_0268 0.90 +1.7 256,972 + Ga0059261_0268 0.90 -0.2 256,972 + Ga0059261_0268 0.90 -0.6 256,973 - Ga0059261_0268 0.90 -0.8 256,973 - Ga0059261_0268 0.90 -0.5 256,973 - Ga0059261_0268 0.90 +0.2 256,973 - Ga0059261_0268 0.90 +0.2 256,973 - Ga0059261_0268 0.90 +0.9 256,973 - Ga0059261_0268 0.90 +0.7 256,973 - Ga0059261_0268 0.90 -0.8 256,976 + -1.3 256,976 + +0.0 256,976 + +0.2 256,976 + +0.2 256,976 + -0.3 256,976 + +0.2 256,976 + +0.0 256,976 + +0.7 256,976 + -0.6 256,976 + +0.2 256,977 - +0.3 256,977 - -2.1 256,977 - +0.9 256,977 - -0.5 256,977 - +1.5 256,977 - +0.7 257,053 + -0.0 257,110 - +1.4 257,110 - +0.3 257,110 - +0.1 257,466 - Ga0059261_0269 0.36 +0.7 257,712 + Ga0059261_0269 0.61 +0.5 257,713 + Ga0059261_0269 0.61 -0.3 257,713 + Ga0059261_0269 0.61 -0.2 257,713 + Ga0059261_0269 0.61 -0.5 257,713 + Ga0059261_0269 0.61 -0.4 257,714 - Ga0059261_0269 0.61 +1.0 257,714 - -0.8 257,764 + Ga0059261_0269 0.66 -0.1 257,764 + Ga0059261_0269 0.66 -0.7 257,764 + Ga0059261_0269 0.66 +0.7 257,764 + Ga0059261_0269 0.66 -0.3 257,764 + Ga0059261_0269 0.66 -0.1 257,764 + Ga0059261_0269 0.66 -1.6 257,764 + Ga0059261_0269 0.66 +0.7 257,764 + Ga0059261_0269 0.66 +0.7 257,764 + Ga0059261_0269 0.66 -1.3 257,764 + Ga0059261_0269 0.66 -0.0 257,765 - Ga0059261_0269 0.67 +1.0 257,765 - Ga0059261_0269 0.67 -0.1 257,765 - Ga0059261_0269 0.67 +1.2 257,807 - Ga0059261_0269 0.71 +0.6 257,807 - Ga0059261_0269 0.71 +1.7 257,807 - Ga0059261_0269 0.71 +0.7 257,807 - Ga0059261_0269 0.71 -0.0 257,807 - Ga0059261_0269 0.71 +0.3 257,839 + Ga0059261_0269 0.74 +0.7 257,839 + Ga0059261_0269 0.74 -0.8 257,839 + Ga0059261_0269 0.74 +0.0 257,839 + Ga0059261_0269 0.74 +0.6 257,840 - Ga0059261_0269 0.74 +0.7 257,840 - Ga0059261_0269 0.74 +0.3 257,840 - Ga0059261_0269 0.74 +0.0
Or see this region's nucleotide sequence