Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24850 and EX31_RS24855 are separated by 371 nucleotides EX31_RS24855 and EX31_RS24860 are separated by 84 nucleotides
EX31_RS24850: EX31_RS24850 - diguanylate cyclase, at 745,666 to 747,387
_RS24850
EX31_RS24855: EX31_RS24855 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 747,759 to 749,276
_RS24855
EX31_RS24860: EX31_RS24860 - PqiB family protein, at 749,361 to 751,991
_RS24860
Position (kb) 747
748
749
750 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 746.847 kb on - strand, within EX31_RS24850 at 746.855 kb on - strand, within EX31_RS24850 at 746.855 kb on - strand, within EX31_RS24850 at 746.855 kb on - strand, within EX31_RS24850 at 746.855 kb on - strand, within EX31_RS24850 at 746.866 kb on - strand, within EX31_RS24850 at 746.866 kb on - strand, within EX31_RS24850 at 746.866 kb on - strand, within EX31_RS24850 at 746.942 kb on + strand, within EX31_RS24850 at 747.106 kb on + strand, within EX31_RS24850 at 747.310 kb on - strand at 747.346 kb on + strand at 747.347 kb on - strand at 747.347 kb on - strand at 747.347 kb on - strand at 747.413 kb on + strand at 747.437 kb on + strand at 747.452 kb on + strand at 747.453 kb on - strand at 747.454 kb on + strand at 747.454 kb on + strand at 747.454 kb on + strand at 747.454 kb on + strand at 747.455 kb on - strand at 747.455 kb on - strand at 747.455 kb on - strand at 747.455 kb on - strand at 747.470 kb on - strand at 747.470 kb on - strand at 747.483 kb on + strand at 747.484 kb on - strand at 747.486 kb on + strand at 747.486 kb on + strand at 747.486 kb on + strand at 747.487 kb on - strand at 747.487 kb on - strand at 747.487 kb on - strand at 747.487 kb on - strand at 747.487 kb on - strand at 747.504 kb on + strand at 747.505 kb on - strand at 747.515 kb on - strand at 747.516 kb on + strand at 747.517 kb on - strand at 747.538 kb on + strand at 747.538 kb on + strand at 747.539 kb on - strand at 747.539 kb on - strand at 747.543 kb on + strand at 747.547 kb on + strand at 747.551 kb on + strand at 747.555 kb on + strand at 747.555 kb on + strand at 747.558 kb on + strand at 747.558 kb on + strand at 747.558 kb on + strand at 747.558 kb on + strand at 747.559 kb on - strand at 747.560 kb on + strand at 747.560 kb on + strand at 747.569 kb on + strand at 747.570 kb on - strand at 747.581 kb on + strand at 747.581 kb on + strand at 747.582 kb on - strand at 747.582 kb on - strand at 747.612 kb on + strand at 747.686 kb on - strand at 747.696 kb on + strand at 747.726 kb on - strand at 747.756 kb on + strand at 748.142 kb on + strand, within EX31_RS24855 at 748.142 kb on + strand, within EX31_RS24855 at 748.142 kb on + strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.143 kb on - strand, within EX31_RS24855 at 748.144 kb on + strand, within EX31_RS24855 at 748.332 kb on + strand, within EX31_RS24855 at 748.333 kb on - strand, within EX31_RS24855 at 748.418 kb on - strand, within EX31_RS24855 at 748.464 kb on - strand, within EX31_RS24855 at 748.703 kb on + strand, within EX31_RS24855 at 748.704 kb on - strand, within EX31_RS24855 at 748.704 kb on - strand, within EX31_RS24855 at 748.762 kb on + strand, within EX31_RS24855 at 748.777 kb on - strand, within EX31_RS24855 at 749.049 kb on - strand, within EX31_RS24855 at 749.049 kb on - strand, within EX31_RS24855 at 749.277 kb on - strand at 749.356 kb on - strand at 749.356 kb on - strand at 749.605 kb on + strand at 749.605 kb on + strand at 749.659 kb on + strand, within EX31_RS24860 at 749.660 kb on - strand, within EX31_RS24860 at 749.675 kb on + strand, within EX31_RS24860 at 749.676 kb on - strand, within EX31_RS24860 at 749.676 kb on - strand, within EX31_RS24860 at 749.679 kb on + strand, within EX31_RS24860 at 749.679 kb on + strand, within EX31_RS24860 at 749.679 kb on + strand, within EX31_RS24860 at 749.680 kb on - strand, within EX31_RS24860 at 749.680 kb on - strand, within EX31_RS24860 at 749.787 kb on - strand, within EX31_RS24860 at 749.844 kb on - strand, within EX31_RS24860 at 749.844 kb on - strand, within EX31_RS24860 at 749.844 kb on - strand, within EX31_RS24860 at 749.844 kb on - strand, within EX31_RS24860 at 749.845 kb on + strand, within EX31_RS24860 at 749.846 kb on - strand, within EX31_RS24860 at 749.846 kb on - strand, within EX31_RS24860 at 749.846 kb on - strand, within EX31_RS24860 at 749.846 kb on - strand, within EX31_RS24860 at 749.846 kb on - strand, within EX31_RS24860 at 749.846 kb on - strand, within EX31_RS24860 at 749.846 kb on - strand, within EX31_RS24860 at 749.955 kb on + strand, within EX31_RS24860 at 749.956 kb on - strand, within EX31_RS24860 at 749.956 kb on - strand, within EX31_RS24860 at 749.956 kb on - strand, within EX31_RS24860 at 749.956 kb on - strand, within EX31_RS24860 at 749.956 kb on - strand, within EX31_RS24860 at 750.035 kb on - strand, within EX31_RS24860 at 750.035 kb on - strand, within EX31_RS24860 at 750.063 kb on - strand, within EX31_RS24860 at 750.073 kb on + strand, within EX31_RS24860 at 750.073 kb on + strand, within EX31_RS24860 at 750.073 kb on + strand, within EX31_RS24860 at 750.074 kb on - strand, within EX31_RS24860 at 750.074 kb on - strand, within EX31_RS24860 at 750.074 kb on - strand, within EX31_RS24860 at 750.074 kb on - strand, within EX31_RS24860 at 750.074 kb on - strand, within EX31_RS24860 at 750.074 kb on - strand, within EX31_RS24860 at 750.088 kb on - strand, within EX31_RS24860 at 750.088 kb on - strand, within EX31_RS24860 at 750.128 kb on - strand, within EX31_RS24860 at 750.128 kb on - strand, within EX31_RS24860 at 750.173 kb on + strand, within EX31_RS24860
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 746,847 - EX31_RS24850 0.69 +2.2 746,855 - EX31_RS24850 0.69 -0.5 746,855 - EX31_RS24850 0.69 +0.9 746,855 - EX31_RS24850 0.69 -0.7 746,855 - EX31_RS24850 0.69 +0.9 746,866 - EX31_RS24850 0.70 +0.4 746,866 - EX31_RS24850 0.70 -1.1 746,866 - EX31_RS24850 0.70 -2.1 746,942 + EX31_RS24850 0.74 -1.4 747,106 + EX31_RS24850 0.84 +2.2 747,310 - +0.6 747,346 + +0.1 747,347 - -0.1 747,347 - +0.9 747,347 - +0.3 747,413 + +0.3 747,437 + -0.7 747,452 + +0.9 747,453 - -0.1 747,454 + +1.9 747,454 + +0.9 747,454 + +1.6 747,454 + +1.6 747,455 - +0.0 747,455 - +1.8 747,455 - +0.3 747,455 - +0.5 747,470 - +0.2 747,470 - -2.4 747,483 + +1.9 747,484 - +0.9 747,486 + +0.9 747,486 + +0.5 747,486 + +0.3 747,487 - +2.3 747,487 - +1.5 747,487 - -2.4 747,487 - -1.9 747,487 - -0.7 747,504 + +1.1 747,505 - -0.1 747,515 - +1.4 747,516 + +3.2 747,517 - -0.4 747,538 + +2.5 747,538 + +1.8 747,539 - +0.5 747,539 - +1.6 747,543 + +0.2 747,547 + +1.3 747,551 + -1.7 747,555 + -0.8 747,555 + +0.3 747,558 + +1.9 747,558 + -0.7 747,558 + -1.4 747,558 + -0.1 747,559 - +0.1 747,560 + -0.5 747,560 + +1.3 747,569 + +1.9 747,570 - +2.2 747,581 + +0.6 747,581 + +0.9 747,582 - +0.9 747,582 - +0.6 747,612 + +1.2 747,686 - -0.7 747,696 + -0.1 747,726 - +1.3 747,756 + -0.7 748,142 + EX31_RS24855 0.25 +0.2 748,142 + EX31_RS24855 0.25 -0.1 748,142 + EX31_RS24855 0.25 -0.1 748,143 - EX31_RS24855 0.25 -0.7 748,143 - EX31_RS24855 0.25 -0.7 748,143 - EX31_RS24855 0.25 -0.4 748,143 - EX31_RS24855 0.25 +1.2 748,143 - EX31_RS24855 0.25 -0.1 748,143 - EX31_RS24855 0.25 +1.6 748,143 - EX31_RS24855 0.25 -0.7 748,143 - EX31_RS24855 0.25 -0.7 748,143 - EX31_RS24855 0.25 +3.2 748,144 + EX31_RS24855 0.25 +0.3 748,332 + EX31_RS24855 0.38 -0.7 748,333 - EX31_RS24855 0.38 -1.1 748,418 - EX31_RS24855 0.43 -2.1 748,464 - EX31_RS24855 0.46 +3.5 748,703 + EX31_RS24855 0.62 -1.1 748,704 - EX31_RS24855 0.62 -1.9 748,704 - EX31_RS24855 0.62 -1.1 748,762 + EX31_RS24855 0.66 -1.1 748,777 - EX31_RS24855 0.67 -1.1 749,049 - EX31_RS24855 0.85 -0.7 749,049 - EX31_RS24855 0.85 +0.3 749,277 - -1.9 749,356 - +0.3 749,356 - -0.7 749,605 + +0.3 749,605 + -1.1 749,659 + EX31_RS24860 0.11 +0.5 749,660 - EX31_RS24860 0.11 +1.1 749,675 + EX31_RS24860 0.12 +1.3 749,676 - EX31_RS24860 0.12 -0.1 749,676 - EX31_RS24860 0.12 +0.4 749,679 + EX31_RS24860 0.12 +0.1 749,679 + EX31_RS24860 0.12 +1.6 749,679 + EX31_RS24860 0.12 +0.7 749,680 - EX31_RS24860 0.12 -1.9 749,680 - EX31_RS24860 0.12 +0.7 749,787 - EX31_RS24860 0.16 +0.5 749,844 - EX31_RS24860 0.18 +0.8 749,844 - EX31_RS24860 0.18 -0.7 749,844 - EX31_RS24860 0.18 -0.1 749,844 - EX31_RS24860 0.18 +0.9 749,845 + EX31_RS24860 0.18 +2.1 749,846 - EX31_RS24860 0.18 -1.4 749,846 - EX31_RS24860 0.18 -0.4 749,846 - EX31_RS24860 0.18 +0.9 749,846 - EX31_RS24860 0.18 +0.9 749,846 - EX31_RS24860 0.18 -0.1 749,846 - EX31_RS24860 0.18 -1.4 749,846 - EX31_RS24860 0.18 -0.1 749,955 + EX31_RS24860 0.23 -0.4 749,956 - EX31_RS24860 0.23 +0.9 749,956 - EX31_RS24860 0.23 -0.1 749,956 - EX31_RS24860 0.23 -0.4 749,956 - EX31_RS24860 0.23 +0.9 749,956 - EX31_RS24860 0.23 -1.1 750,035 - EX31_RS24860 0.26 -0.1 750,035 - EX31_RS24860 0.26 -0.3 750,063 - EX31_RS24860 0.27 +2.5 750,073 + EX31_RS24860 0.27 -2.0 750,073 + EX31_RS24860 0.27 +0.9 750,073 + EX31_RS24860 0.27 +1.6 750,074 - EX31_RS24860 0.27 +0.1 750,074 - EX31_RS24860 0.27 -1.1 750,074 - EX31_RS24860 0.27 -0.7 750,074 - EX31_RS24860 0.27 +0.1 750,074 - EX31_RS24860 0.27 -0.3 750,074 - EX31_RS24860 0.27 +0.9 750,088 - EX31_RS24860 0.28 +0.5 750,088 - EX31_RS24860 0.28 +0.2 750,128 - EX31_RS24860 0.29 -0.1 750,128 - EX31_RS24860 0.29 +2.2 750,173 + EX31_RS24860 0.31 +2.3
Or see this region's nucleotide sequence