Strain Fitness in Rahnella sp. WP5 around EX31_RS24495

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24480 and EX31_RS24485 are separated by 8 nucleotidesEX31_RS24485 and EX31_RS24490 are separated by 21 nucleotidesEX31_RS24490 and EX31_RS24495 overlap by 17 nucleotidesEX31_RS24495 and EX31_RS24500 are separated by 48 nucleotides EX31_RS24480: EX31_RS24480 - purine nucleoside phosphoramidase, at 664,251 to 664,604 _RS24480 EX31_RS24485: EX31_RS24485 - DUF1425 domain-containing protein, at 664,613 to 664,981 _RS24485 EX31_RS24490: EX31_RS24490 - penicillin-binding protein activator LpoB, at 665,003 to 665,605 _RS24490 EX31_RS24495: EX31_RS24495 - phosphotransferase, at 665,589 to 666,446 _RS24495 EX31_RS24500: EX31_RS24500 - beta-N-acetylhexosaminidase, at 666,495 to 667,523 _RS24500 Position (kb) 665 666 667Strain fitness (log2 ratio) -2 -1 0 1 2 3at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.653 kb on + strand, within EX31_RS24485at 664.654 kb on - strand, within EX31_RS24485at 664.661 kb on - strand, within EX31_RS24485at 664.755 kb on + strand, within EX31_RS24485at 664.838 kb on + strand, within EX31_RS24485at 664.838 kb on + strand, within EX31_RS24485at 664.838 kb on + strand, within EX31_RS24485at 664.838 kb on + strand, within EX31_RS24485at 664.839 kb on - strand, within EX31_RS24485at 664.844 kb on + strand, within EX31_RS24485at 664.845 kb on - strand, within EX31_RS24485at 664.849 kb on + strand, within EX31_RS24485at 664.850 kb on - strand, within EX31_RS24485at 664.850 kb on - strand, within EX31_RS24485at 664.866 kb on + strand, within EX31_RS24485at 664.894 kb on + strand, within EX31_RS24485at 664.894 kb on + strand, within EX31_RS24485at 664.894 kb on + strand, within EX31_RS24485at 664.894 kb on + strand, within EX31_RS24485at 664.895 kb on - strand, within EX31_RS24485at 664.895 kb on - strand, within EX31_RS24485at 664.952 kb on + strandat 664.952 kb on + strandat 664.953 kb on - strandat 664.963 kb on + strandat 664.963 kb on + strandat 664.964 kb on - strandat 664.964 kb on - strandat 664.964 kb on - strandat 664.964 kb on - strandat 664.967 kb on + strandat 664.967 kb on + strandat 664.967 kb on + strandat 664.973 kb on + strandat 664.974 kb on - strandat 665.056 kb on + strandat 665.056 kb on + strandat 665.056 kb on + strandat 665.056 kb on + strandat 665.057 kb on - strandat 665.057 kb on - strandat 665.057 kb on - strandat 665.478 kb on + strand, within EX31_RS24490at 665.478 kb on + strand, within EX31_RS24490at 665.479 kb on - strand, within EX31_RS24490at 665.479 kb on - strand, within EX31_RS24490at 665.489 kb on + strand, within EX31_RS24490at 665.504 kb on - strand, within EX31_RS24490at 665.686 kb on + strand, within EX31_RS24495at 665.764 kb on + strand, within EX31_RS24495at 665.764 kb on + strand, within EX31_RS24495at 665.819 kb on + strand, within EX31_RS24495at 665.887 kb on + strand, within EX31_RS24495at 665.915 kb on - strand, within EX31_RS24495at 665.915 kb on - strand, within EX31_RS24495at 665.965 kb on + strand, within EX31_RS24495at 665.965 kb on + strand, within EX31_RS24495at 665.980 kb on + strand, within EX31_RS24495at 666.001 kb on + strand, within EX31_RS24495at 666.001 kb on + strand, within EX31_RS24495at 666.002 kb on - strand, within EX31_RS24495at 666.021 kb on + strand, within EX31_RS24495at 666.032 kb on + strand, within EX31_RS24495at 666.032 kb on + strand, within EX31_RS24495at 666.032 kb on + strand, within EX31_RS24495at 666.032 kb on + strand, within EX31_RS24495at 666.033 kb on - strand, within EX31_RS24495at 666.033 kb on - strand, within EX31_RS24495at 666.033 kb on - strand, within EX31_RS24495at 666.124 kb on + strand, within EX31_RS24495at 666.124 kb on + strand, within EX31_RS24495at 666.124 kb on + strand, within EX31_RS24495at 666.124 kb on + strand, within EX31_RS24495at 666.124 kb on + strand, within EX31_RS24495at 666.124 kb on + strand, within EX31_RS24495at 666.124 kb on + strand, within EX31_RS24495at 666.124 kb on + strand, within EX31_RS24495at 666.125 kb on - strand, within EX31_RS24495at 666.125 kb on - strand, within EX31_RS24495at 666.125 kb on - strand, within EX31_RS24495at 666.125 kb on - strand, within EX31_RS24495at 666.125 kb on - strand, within EX31_RS24495at 666.125 kb on - strand, within EX31_RS24495at 666.128 kb on + strand, within EX31_RS24495at 666.128 kb on + strand, within EX31_RS24495at 666.128 kb on + strand, within EX31_RS24495at 666.129 kb on - strand, within EX31_RS24495at 666.129 kb on - strand, within EX31_RS24495at 666.134 kb on + strand, within EX31_RS24495at 666.155 kb on + strand, within EX31_RS24495at 666.155 kb on + strand, within EX31_RS24495at 666.155 kb on + strand, within EX31_RS24495at 666.155 kb on + strand, within EX31_RS24495at 666.156 kb on - strand, within EX31_RS24495at 666.156 kb on - strand, within EX31_RS24495at 666.156 kb on - strand, within EX31_RS24495at 666.156 kb on - strand, within EX31_RS24495at 666.156 kb on - strand, within EX31_RS24495at 666.156 kb on - strand, within EX31_RS24495at 666.158 kb on + strand, within EX31_RS24495at 666.313 kb on + strand, within EX31_RS24495at 666.313 kb on + strand, within EX31_RS24495at 666.313 kb on + strand, within EX31_RS24495at 666.411 kb on - strandat 666.414 kb on + strandat 666.414 kb on + strandat 666.415 kb on - strandat 666.448 kb on - strandat 666.588 kb on + strandat 666.589 kb on - strandat 666.664 kb on + strand, within EX31_RS24500at 666.685 kb on + strand, within EX31_RS24500at 666.857 kb on + strand, within EX31_RS24500at 666.857 kb on + strand, within EX31_RS24500at 666.857 kb on + strand, within EX31_RS24500at 666.858 kb on - strand, within EX31_RS24500at 666.858 kb on - strand, within EX31_RS24500at 666.869 kb on + strand, within EX31_RS24500at 666.928 kb on - strand, within EX31_RS24500at 666.929 kb on + strand, within EX31_RS24500at 666.929 kb on + strand, within EX31_RS24500at 666.929 kb on + strand, within EX31_RS24500at 666.929 kb on + strand, within EX31_RS24500at 667.091 kb on + strand, within EX31_RS24500at 667.128 kb on + strand, within EX31_RS24500at 667.128 kb on + strand, within EX31_RS24500at 667.128 kb on + strand, within EX31_RS24500at 667.129 kb on - strand, within EX31_RS24500at 667.129 kb on - strand, within EX31_RS24500at 667.129 kb on - strand, within EX31_RS24500at 667.129 kb on - strand, within EX31_RS24500at 667.130 kb on + strand, within EX31_RS24500at 667.130 kb on + strand, within EX31_RS24500at 667.168 kb on - strand, within EX31_RS24500at 667.229 kb on + strand, within EX31_RS24500at 667.313 kb on - strand, within EX31_RS24500at 667.319 kb on + strand, within EX31_RS24500at 667.393 kb on - strand, within EX31_RS24500at 667.393 kb on - strand, within EX31_RS24500at 667.393 kb on - strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.407 kb on + strand, within EX31_RS24500at 667.408 kb on - strand, within EX31_RS24500at 667.408 kb on - strand, within EX31_RS24500at 667.408 kb on - strand, within EX31_RS24500at 667.408 kb on - strand, within EX31_RS24500

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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664,653 + EX31_RS24485 0.11 -1.9
664,653 + EX31_RS24485 0.11 +0.3
664,653 + EX31_RS24485 0.11 -0.7
664,653 + EX31_RS24485 0.11 +0.6
664,653 + EX31_RS24485 0.11 +0.7
664,653 + EX31_RS24485 0.11 -0.9
664,653 + EX31_RS24485 0.11 +0.6
664,653 + EX31_RS24485 0.11 +0.5
664,654 - EX31_RS24485 0.11 +0.9
664,661 - EX31_RS24485 0.13 +0.6
664,755 + EX31_RS24485 0.38 +0.9
664,838 + EX31_RS24485 0.61 +0.5
664,838 + EX31_RS24485 0.61 -0.1
664,838 + EX31_RS24485 0.61 +0.9
664,838 + EX31_RS24485 0.61 +0.5
664,839 - EX31_RS24485 0.61 -0.3
664,844 + EX31_RS24485 0.63 -2.3
664,845 - EX31_RS24485 0.63 +0.3
664,849 + EX31_RS24485 0.64 +1.4
664,850 - EX31_RS24485 0.64 +0.6
664,850 - EX31_RS24485 0.64 -0.4
664,866 + EX31_RS24485 0.69 +1.2
664,894 + EX31_RS24485 0.76 -0.9
664,894 + EX31_RS24485 0.76 +1.2
664,894 + EX31_RS24485 0.76 +0.9
664,894 + EX31_RS24485 0.76 +0.3
664,895 - EX31_RS24485 0.76 -0.4
664,895 - EX31_RS24485 0.76 -2.1
664,952 + -1.6
664,952 + -1.1
664,953 - -1.4
664,963 + +0.9
664,963 + -0.2
664,964 - +1.2
664,964 - +0.1
664,964 - +0.0
664,964 - -0.6
664,967 + +1.6
664,967 + +0.3
664,967 + -1.7
664,973 + +0.6
664,974 - -0.7
665,056 + -1.7
665,056 + +1.6
665,056 + +0.3
665,056 + +0.4
665,057 - +0.2
665,057 - -0.1
665,057 - -0.4
665,478 + EX31_RS24490 0.79 -2.1
665,478 + EX31_RS24490 0.79 -1.7
665,479 - EX31_RS24490 0.79 +1.6
665,479 - EX31_RS24490 0.79 -1.0
665,489 + EX31_RS24490 0.81 +0.1
665,504 - EX31_RS24490 0.83 +2.3
665,686 + EX31_RS24495 0.11 -0.7
665,764 + EX31_RS24495 0.20 -0.8
665,764 + EX31_RS24495 0.20 -1.8
665,819 + EX31_RS24495 0.27 +0.3
665,887 + EX31_RS24495 0.35 -0.1
665,915 - EX31_RS24495 0.38 +1.3
665,915 - EX31_RS24495 0.38 -0.6
665,965 + EX31_RS24495 0.44 -0.1
665,965 + EX31_RS24495 0.44 -1.7
665,980 + EX31_RS24495 0.46 +0.2
666,001 + EX31_RS24495 0.48 -1.1
666,001 + EX31_RS24495 0.48 -0.1
666,002 - EX31_RS24495 0.48 +3.2
666,021 + EX31_RS24495 0.50 -0.5
666,032 + EX31_RS24495 0.52 +0.5
666,032 + EX31_RS24495 0.52 +0.5
666,032 + EX31_RS24495 0.52 -1.4
666,032 + EX31_RS24495 0.52 +0.9
666,033 - EX31_RS24495 0.52 +1.9
666,033 - EX31_RS24495 0.52 -2.0
666,033 - EX31_RS24495 0.52 +1.9
666,124 + EX31_RS24495 0.62 -0.4
666,124 + EX31_RS24495 0.62 +1.3
666,124 + EX31_RS24495 0.62 +0.3
666,124 + EX31_RS24495 0.62 +1.3
666,124 + EX31_RS24495 0.62 +0.6
666,124 + EX31_RS24495 0.62 +1.9
666,124 + EX31_RS24495 0.62 +0.7
666,124 + EX31_RS24495 0.62 -1.1
666,125 - EX31_RS24495 0.62 +0.6
666,125 - EX31_RS24495 0.62 -0.7
666,125 - EX31_RS24495 0.62 -1.5
666,125 - EX31_RS24495 0.62 +0.6
666,125 - EX31_RS24495 0.62 -0.1
666,125 - EX31_RS24495 0.62 +0.1
666,128 + EX31_RS24495 0.63 -2.0
666,128 + EX31_RS24495 0.63 -1.7
666,128 + EX31_RS24495 0.63 -2.7
666,129 - EX31_RS24495 0.63 -1.7
666,129 - EX31_RS24495 0.63 +1.6
666,134 + EX31_RS24495 0.64 +0.3
666,155 + EX31_RS24495 0.66 -2.0
666,155 + EX31_RS24495 0.66 -1.0
666,155 + EX31_RS24495 0.66 +0.3
666,155 + EX31_RS24495 0.66 -0.4
666,156 - EX31_RS24495 0.66 +0.9
666,156 - EX31_RS24495 0.66 -1.4
666,156 - EX31_RS24495 0.66 -0.1
666,156 - EX31_RS24495 0.66 +0.2
666,156 - EX31_RS24495 0.66 -1.1
666,156 - EX31_RS24495 0.66 +0.2
666,158 + EX31_RS24495 0.66 -0.8
666,313 + EX31_RS24495 0.84 -2.1
666,313 + EX31_RS24495 0.84 -1.3
666,313 + EX31_RS24495 0.84 -0.4
666,411 - +0.9
666,414 + +1.1
666,414 + +0.3
666,415 - +0.9
666,448 - +0.2
666,588 + -0.1
666,589 - -1.1
666,664 + EX31_RS24500 0.16 -0.7
666,685 + EX31_RS24500 0.18 -0.7
666,857 + EX31_RS24500 0.35 +0.5
666,857 + EX31_RS24500 0.35 -0.7
666,857 + EX31_RS24500 0.35 +2.9
666,858 - EX31_RS24500 0.35 +1.7
666,858 - EX31_RS24500 0.35 +0.7
666,869 + EX31_RS24500 0.36 +0.1
666,928 - EX31_RS24500 0.42 -1.1
666,929 + EX31_RS24500 0.42 +0.9
666,929 + EX31_RS24500 0.42 -0.1
666,929 + EX31_RS24500 0.42 -1.3
666,929 + EX31_RS24500 0.42 +2.5
667,091 + EX31_RS24500 0.58 +2.5
667,128 + EX31_RS24500 0.62 +1.2
667,128 + EX31_RS24500 0.62 +1.5
667,128 + EX31_RS24500 0.62 -0.1
667,129 - EX31_RS24500 0.62 -0.7
667,129 - EX31_RS24500 0.62 +0.5
667,129 - EX31_RS24500 0.62 +0.5
667,129 - EX31_RS24500 0.62 -1.9
667,130 + EX31_RS24500 0.62 +0.9
667,130 + EX31_RS24500 0.62 +1.3
667,168 - EX31_RS24500 0.65 -2.6
667,229 + EX31_RS24500 0.71 -0.7
667,313 - EX31_RS24500 0.79 +0.3
667,319 + EX31_RS24500 0.80 +0.5
667,393 - EX31_RS24500 0.87 +0.9
667,393 - EX31_RS24500 0.87 +0.6
667,393 - EX31_RS24500 0.87 -0.5
667,407 + EX31_RS24500 0.89 -0.4
667,407 + EX31_RS24500 0.89 -1.9
667,407 + EX31_RS24500 0.89 +0.7
667,407 + EX31_RS24500 0.89 +0.9
667,407 + EX31_RS24500 0.89 +2.9
667,407 + EX31_RS24500 0.89 -1.1
667,407 + EX31_RS24500 0.89 +1.9
667,407 + EX31_RS24500 0.89 -1.3
667,407 + EX31_RS24500 0.89 +0.3
667,407 + EX31_RS24500 0.89 -1.0
667,407 + EX31_RS24500 0.89 +0.3
667,408 - EX31_RS24500 0.89 +0.6
667,408 - EX31_RS24500 0.89 +1.1
667,408 - EX31_RS24500 0.89 -0.1
667,408 - EX31_RS24500 0.89 -0.1

Or see this region's nucleotide sequence