Strain Fitness in Rahnella sp. WP5 around EX31_RS24320

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24315 and EX31_RS24320 are separated by 265 nucleotidesEX31_RS24320 and EX31_RS24325 are separated by 211 nucleotides EX31_RS24315: EX31_RS24315 - multidrug efflux MFS transporter MdtG, at 627,947 to 629,185 _RS24315 EX31_RS24320: EX31_RS24320 - DoxX family protein, at 629,451 to 629,885 _RS24320 EX31_RS24325: EX31_RS24325 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee, at 630,097 to 631,032 _RS24325 Position (kb) 629 630Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 628.484 kb on - strand, within EX31_RS24315at 628.603 kb on - strand, within EX31_RS24315at 628.603 kb on - strand, within EX31_RS24315at 628.645 kb on + strand, within EX31_RS24315at 628.668 kb on + strand, within EX31_RS24315at 628.668 kb on + strand, within EX31_RS24315at 628.669 kb on - strand, within EX31_RS24315at 628.669 kb on - strand, within EX31_RS24315at 628.669 kb on - strand, within EX31_RS24315at 628.669 kb on - strand, within EX31_RS24315at 628.669 kb on - strand, within EX31_RS24315at 628.669 kb on - strand, within EX31_RS24315at 628.669 kb on - strand, within EX31_RS24315at 628.760 kb on - strand, within EX31_RS24315at 628.827 kb on - strand, within EX31_RS24315at 628.875 kb on - strand, within EX31_RS24315at 628.877 kb on + strand, within EX31_RS24315at 628.877 kb on + strand, within EX31_RS24315at 628.877 kb on + strand, within EX31_RS24315at 628.878 kb on - strand, within EX31_RS24315at 628.878 kb on - strand, within EX31_RS24315at 629.015 kb on - strand, within EX31_RS24315at 629.015 kb on - strand, within EX31_RS24315at 629.055 kb on + strand, within EX31_RS24315at 629.131 kb on + strandat 629.131 kb on + strandat 629.131 kb on + strandat 629.247 kb on + strandat 629.247 kb on + strandat 629.247 kb on + strandat 629.248 kb on - strandat 629.251 kb on + strandat 629.251 kb on + strandat 629.252 kb on - strandat 629.252 kb on - strandat 629.282 kb on + strandat 629.286 kb on + strandat 629.287 kb on - strandat 629.317 kb on + strandat 629.433 kb on + strandat 629.437 kb on - strandat 629.437 kb on - strandat 629.440 kb on - strandat 629.440 kb on - strandat 629.452 kb on + strandat 629.453 kb on - strandat 629.483 kb on - strandat 629.483 kb on - strandat 629.528 kb on - strand, within EX31_RS24320at 629.568 kb on - strand, within EX31_RS24320at 629.695 kb on + strand, within EX31_RS24320at 629.696 kb on - strand, within EX31_RS24320at 629.705 kb on - strand, within EX31_RS24320at 629.796 kb on + strand, within EX31_RS24320at 629.829 kb on - strand, within EX31_RS24320at 629.885 kb on + strandat 629.885 kb on + strandat 629.886 kb on - strandat 629.886 kb on - strandat 629.886 kb on - strandat 629.954 kb on + strandat 629.982 kb on + strandat 629.982 kb on + strandat 629.983 kb on - strandat 630.014 kb on + strandat 630.015 kb on - strandat 630.015 kb on - strandat 630.015 kb on - strandat 630.115 kb on - strandat 630.169 kb on - strandat 630.169 kb on - strandat 630.169 kb on - strandat 630.169 kb on - strandat 630.169 kb on - strandat 630.170 kb on + strandat 630.170 kb on + strandat 630.171 kb on - strandat 630.171 kb on - strandat 630.219 kb on - strand, within EX31_RS24325at 630.219 kb on - strand, within EX31_RS24325at 630.273 kb on + strand, within EX31_RS24325at 630.274 kb on - strand, within EX31_RS24325at 630.274 kb on - strand, within EX31_RS24325at 630.357 kb on - strand, within EX31_RS24325at 630.357 kb on - strand, within EX31_RS24325at 630.357 kb on - strand, within EX31_RS24325at 630.400 kb on + strand, within EX31_RS24325at 630.426 kb on - strand, within EX31_RS24325at 630.601 kb on - strand, within EX31_RS24325at 630.641 kb on - strand, within EX31_RS24325at 630.801 kb on + strand, within EX31_RS24325at 630.802 kb on - strand, within EX31_RS24325at 630.802 kb on - strand, within EX31_RS24325

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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628,484 - EX31_RS24315 0.43 -0.8
628,603 - EX31_RS24315 0.53 +0.9
628,603 - EX31_RS24315 0.53 +2.5
628,645 + EX31_RS24315 0.56 +0.1
628,668 + EX31_RS24315 0.58 -0.1
628,668 + EX31_RS24315 0.58 +1.9
628,669 - EX31_RS24315 0.58 -2.2
628,669 - EX31_RS24315 0.58 -0.4
628,669 - EX31_RS24315 0.58 +0.9
628,669 - EX31_RS24315 0.58 -0.1
628,669 - EX31_RS24315 0.58 +0.9
628,669 - EX31_RS24315 0.58 +0.8
628,669 - EX31_RS24315 0.58 -1.7
628,760 - EX31_RS24315 0.66 -0.3
628,827 - EX31_RS24315 0.71 -1.6
628,875 - EX31_RS24315 0.75 +0.3
628,877 + EX31_RS24315 0.75 +0.2
628,877 + EX31_RS24315 0.75 +2.5
628,877 + EX31_RS24315 0.75 +0.9
628,878 - EX31_RS24315 0.75 +0.1
628,878 - EX31_RS24315 0.75 -1.3
629,015 - EX31_RS24315 0.86 -1.4
629,015 - EX31_RS24315 0.86 +0.5
629,055 + EX31_RS24315 0.89 +0.9
629,131 + +0.9
629,131 + -0.1
629,131 + -0.1
629,247 + +1.2
629,247 + +0.9
629,247 + -0.1
629,248 - -0.8
629,251 + +0.5
629,251 + -0.2
629,252 - -0.7
629,252 - -1.1
629,282 + -0.7
629,286 + +1.6
629,287 - -2.4
629,317 + -1.2
629,433 + -1.7
629,437 - +0.9
629,437 - -0.1
629,440 - +0.4
629,440 - -1.3
629,452 + -0.5
629,453 - +0.3
629,483 - -0.1
629,483 - -0.7
629,528 - EX31_RS24320 0.18 -1.4
629,568 - EX31_RS24320 0.27 -0.3
629,695 + EX31_RS24320 0.56 -0.9
629,696 - EX31_RS24320 0.56 -0.7
629,705 - EX31_RS24320 0.58 -1.4
629,796 + EX31_RS24320 0.79 +0.9
629,829 - EX31_RS24320 0.87 -0.7
629,885 + +0.7
629,885 + +0.9
629,886 - +0.7
629,886 - -1.4
629,886 - -3.0
629,954 + +1.6
629,982 + +0.1
629,982 + -0.1
629,983 - -0.1
630,014 + -0.4
630,015 - +3.4
630,015 - +1.6
630,015 - +2.2
630,115 - +1.6
630,169 - -0.7
630,169 - -0.1
630,169 - -1.1
630,169 - +0.9
630,169 - -0.7
630,170 + -0.1
630,170 + -1.4
630,171 - +2.1
630,171 - -1.4
630,219 - EX31_RS24325 0.13 +0.2
630,219 - EX31_RS24325 0.13 -0.7
630,273 + EX31_RS24325 0.19 +1.9
630,274 - EX31_RS24325 0.19 +0.1
630,274 - EX31_RS24325 0.19 +1.2
630,357 - EX31_RS24325 0.28 +0.9
630,357 - EX31_RS24325 0.28 -0.5
630,357 - EX31_RS24325 0.28 +0.9
630,400 + EX31_RS24325 0.32 -2.1
630,426 - EX31_RS24325 0.35 -0.7
630,601 - EX31_RS24325 0.54 -0.1
630,641 - EX31_RS24325 0.58 +0.3
630,801 + EX31_RS24325 0.75 -0.4
630,802 - EX31_RS24325 0.75 +0.1
630,802 - EX31_RS24325 0.75 +1.9

Or see this region's nucleotide sequence