Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24045 and EX31_RS24050 overlap by 4 nucleotides EX31_RS24050 and EX31_RS24055 are separated by 17 nucleotides EX31_RS24055 and EX31_RS24060 are separated by 254 nucleotides
EX31_RS24045: EX31_RS24045 - ABC transporter permease, at 577,764 to 578,627
_RS24045
EX31_RS24050: EX31_RS24050 - ABC transporter permease, at 578,624 to 579,583
_RS24050
EX31_RS24055: EX31_RS24055 - TIGR04028 family ABC transporter substrate-binding protein, at 579,601 to 581,241
_RS24055
EX31_RS24060: EX31_RS24060 - pyrimidine utilization transport protein G, at 581,496 to 582,845
_RS24060
Position (kb) 579
580
581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 578.601 kb on - strand at 578.601 kb on - strand at 578.617 kb on - strand at 578.651 kb on - strand at 578.666 kb on - strand at 578.666 kb on - strand at 578.689 kb on - strand at 578.773 kb on + strand, within EX31_RS24050 at 578.989 kb on + strand, within EX31_RS24050 at 579.295 kb on + strand, within EX31_RS24050 at 579.295 kb on + strand, within EX31_RS24050 at 579.305 kb on + strand, within EX31_RS24050 at 579.306 kb on - strand, within EX31_RS24050 at 579.374 kb on - strand, within EX31_RS24050 at 579.381 kb on + strand, within EX31_RS24050 at 579.381 kb on + strand, within EX31_RS24050 at 579.381 kb on + strand, within EX31_RS24050 at 579.382 kb on - strand, within EX31_RS24050 at 579.382 kb on - strand, within EX31_RS24050 at 579.382 kb on - strand, within EX31_RS24050 at 579.382 kb on - strand, within EX31_RS24050 at 579.412 kb on - strand, within EX31_RS24050 at 579.446 kb on + strand, within EX31_RS24050 at 579.447 kb on - strand, within EX31_RS24050 at 579.472 kb on + strand, within EX31_RS24050 at 579.589 kb on - strand at 579.602 kb on + strand at 579.603 kb on - strand at 579.603 kb on - strand at 579.627 kb on - strand at 579.719 kb on + strand at 579.719 kb on + strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.720 kb on - strand at 579.737 kb on + strand at 579.737 kb on + strand at 579.737 kb on + strand at 579.737 kb on + strand at 579.737 kb on + strand at 579.738 kb on - strand at 579.738 kb on - strand at 579.738 kb on - strand at 579.890 kb on + strand, within EX31_RS24055 at 580.005 kb on + strand, within EX31_RS24055 at 580.005 kb on + strand, within EX31_RS24055 at 580.088 kb on + strand, within EX31_RS24055 at 580.088 kb on + strand, within EX31_RS24055 at 580.088 kb on + strand, within EX31_RS24055 at 580.088 kb on + strand, within EX31_RS24055 at 580.089 kb on - strand, within EX31_RS24055 at 580.089 kb on - strand, within EX31_RS24055 at 580.093 kb on - strand, within EX31_RS24055 at 580.093 kb on - strand, within EX31_RS24055 at 580.191 kb on - strand, within EX31_RS24055 at 580.217 kb on + strand, within EX31_RS24055 at 580.217 kb on + strand, within EX31_RS24055 at 580.218 kb on - strand, within EX31_RS24055 at 580.218 kb on - strand, within EX31_RS24055 at 580.218 kb on - strand, within EX31_RS24055 at 580.279 kb on - strand, within EX31_RS24055 at 580.439 kb on + strand, within EX31_RS24055 at 580.439 kb on + strand, within EX31_RS24055 at 580.440 kb on - strand, within EX31_RS24055 at 580.580 kb on + strand, within EX31_RS24055 at 580.580 kb on + strand, within EX31_RS24055 at 580.686 kb on + strand, within EX31_RS24055 at 580.725 kb on + strand, within EX31_RS24055 at 580.726 kb on - strand, within EX31_RS24055 at 580.726 kb on - strand, within EX31_RS24055 at 580.769 kb on + strand, within EX31_RS24055 at 580.769 kb on + strand, within EX31_RS24055 at 580.770 kb on - strand, within EX31_RS24055 at 580.811 kb on + strand, within EX31_RS24055 at 580.811 kb on + strand, within EX31_RS24055 at 580.812 kb on - strand, within EX31_RS24055 at 580.865 kb on + strand, within EX31_RS24055 at 580.865 kb on + strand, within EX31_RS24055 at 580.866 kb on - strand, within EX31_RS24055 at 580.866 kb on - strand, within EX31_RS24055 at 580.869 kb on + strand, within EX31_RS24055 at 580.869 kb on + strand, within EX31_RS24055 at 580.870 kb on - strand, within EX31_RS24055 at 580.870 kb on - strand, within EX31_RS24055 at 580.870 kb on - strand, within EX31_RS24055 at 580.870 kb on - strand, within EX31_RS24055 at 580.949 kb on + strand, within EX31_RS24055 at 580.949 kb on + strand, within EX31_RS24055 at 580.950 kb on - strand, within EX31_RS24055 at 580.959 kb on + strand, within EX31_RS24055 at 580.960 kb on - strand, within EX31_RS24055 at 580.960 kb on - strand, within EX31_RS24055 at 581.024 kb on + strand, within EX31_RS24055 at 581.069 kb on + strand, within EX31_RS24055 at 581.120 kb on + strand at 581.120 kb on + strand at 581.245 kb on + strand at 581.296 kb on + strand at 581.296 kb on + strand at 581.296 kb on + strand at 581.297 kb on - strand at 581.297 kb on - strand at 581.297 kb on - strand at 581.297 kb on - strand at 581.331 kb on + strand at 581.331 kb on + strand at 581.332 kb on - strand at 581.332 kb on - strand at 581.477 kb on + strand at 581.477 kb on + strand at 581.477 kb on + strand at 581.478 kb on - strand at 581.478 kb on - strand at 581.478 kb on - strand at 581.478 kb on - strand at 581.478 kb on - strand at 581.509 kb on - strand at 581.788 kb on - strand, within EX31_RS24060 at 581.885 kb on - strand, within EX31_RS24060 at 581.923 kb on + strand, within EX31_RS24060 at 581.923 kb on + strand, within EX31_RS24060 at 581.924 kb on - strand, within EX31_RS24060 at 581.961 kb on + strand, within EX31_RS24060 at 581.961 kb on + strand, within EX31_RS24060 at 582.001 kb on + strand, within EX31_RS24060 at 582.001 kb on + strand, within EX31_RS24060 at 582.001 kb on + strand, within EX31_RS24060 at 582.001 kb on + strand, within EX31_RS24060 at 582.001 kb on + strand, within EX31_RS24060 at 582.001 kb on + strand, within EX31_RS24060 at 582.002 kb on - strand, within EX31_RS24060 at 582.002 kb on - strand, within EX31_RS24060 at 582.002 kb on - strand, within EX31_RS24060 at 582.002 kb on - strand, within EX31_RS24060 at 582.002 kb on - strand, within EX31_RS24060 at 582.042 kb on - strand, within EX31_RS24060 at 582.203 kb on + strand, within EX31_RS24060 at 582.214 kb on + strand, within EX31_RS24060 at 582.214 kb on + strand, within EX31_RS24060 at 582.214 kb on + strand, within EX31_RS24060 at 582.214 kb on + strand, within EX31_RS24060 at 582.215 kb on - strand, within EX31_RS24060 at 582.215 kb on - strand, within EX31_RS24060 at 582.215 kb on - strand, within EX31_RS24060 at 582.215 kb on - strand, within EX31_RS24060 at 582.215 kb on - strand, within EX31_RS24060 at 582.215 kb on - strand, within EX31_RS24060 at 582.215 kb on - strand, within EX31_RS24060
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 578,601 - +0.4 578,601 - -1.4 578,617 - +0.4 578,651 - +1.7 578,666 - +0.5 578,666 - -2.9 578,689 - -1.1 578,773 + EX31_RS24050 0.16 -0.5 578,989 + EX31_RS24050 0.38 -0.1 579,295 + EX31_RS24050 0.70 -1.1 579,295 + EX31_RS24050 0.70 +2.5 579,305 + EX31_RS24050 0.71 -1.5 579,306 - EX31_RS24050 0.71 +1.2 579,374 - EX31_RS24050 0.78 -0.1 579,381 + EX31_RS24050 0.79 -0.1 579,381 + EX31_RS24050 0.79 +2.9 579,381 + EX31_RS24050 0.79 -0.1 579,382 - EX31_RS24050 0.79 +0.9 579,382 - EX31_RS24050 0.79 -0.7 579,382 - EX31_RS24050 0.79 +0.2 579,382 - EX31_RS24050 0.79 +0.1 579,412 - EX31_RS24050 0.82 +0.7 579,446 + EX31_RS24050 0.86 -0.7 579,447 - EX31_RS24050 0.86 -1.9 579,472 + EX31_RS24050 0.88 +0.3 579,589 - -0.1 579,602 + +0.9 579,603 - +1.9 579,603 - +0.7 579,627 - +0.2 579,719 + -1.7 579,719 + -1.1 579,720 - -0.4 579,720 - +0.9 579,720 - +0.3 579,720 - +1.1 579,720 - +1.0 579,720 - -0.9 579,720 - +2.5 579,737 + -1.4 579,737 + -1.4 579,737 + -0.9 579,737 + -0.7 579,737 + +0.6 579,738 - -2.0 579,738 - +0.7 579,738 - -0.1 579,890 + EX31_RS24055 0.18 -1.4 580,005 + EX31_RS24055 0.25 +1.3 580,005 + EX31_RS24055 0.25 +0.8 580,088 + EX31_RS24055 0.30 -0.4 580,088 + EX31_RS24055 0.30 -0.1 580,088 + EX31_RS24055 0.30 -0.5 580,088 + EX31_RS24055 0.30 +0.2 580,089 - EX31_RS24055 0.30 +0.3 580,089 - EX31_RS24055 0.30 +2.3 580,093 - EX31_RS24055 0.30 -0.2 580,093 - EX31_RS24055 0.30 -0.7 580,191 - EX31_RS24055 0.36 +1.1 580,217 + EX31_RS24055 0.38 +2.3 580,217 + EX31_RS24055 0.38 +0.7 580,218 - EX31_RS24055 0.38 -0.8 580,218 - EX31_RS24055 0.38 -0.9 580,218 - EX31_RS24055 0.38 +1.9 580,279 - EX31_RS24055 0.41 -0.1 580,439 + EX31_RS24055 0.51 +0.6 580,439 + EX31_RS24055 0.51 +0.5 580,440 - EX31_RS24055 0.51 -2.4 580,580 + EX31_RS24055 0.60 -1.8 580,580 + EX31_RS24055 0.60 +1.9 580,686 + EX31_RS24055 0.66 +0.7 580,725 + EX31_RS24055 0.68 +1.3 580,726 - EX31_RS24055 0.69 +1.2 580,726 - EX31_RS24055 0.69 +0.7 580,769 + EX31_RS24055 0.71 -0.1 580,769 + EX31_RS24055 0.71 +2.3 580,770 - EX31_RS24055 0.71 +0.8 580,811 + EX31_RS24055 0.74 +0.3 580,811 + EX31_RS24055 0.74 +0.1 580,812 - EX31_RS24055 0.74 +0.9 580,865 + EX31_RS24055 0.77 +0.7 580,865 + EX31_RS24055 0.77 +2.2 580,866 - EX31_RS24055 0.77 -1.9 580,866 - EX31_RS24055 0.77 -1.4 580,869 + EX31_RS24055 0.77 -1.7 580,869 + EX31_RS24055 0.77 -0.2 580,870 - EX31_RS24055 0.77 +1.9 580,870 - EX31_RS24055 0.77 +0.1 580,870 - EX31_RS24055 0.77 +0.9 580,870 - EX31_RS24055 0.77 +0.3 580,949 + EX31_RS24055 0.82 +0.7 580,949 + EX31_RS24055 0.82 +2.5 580,950 - EX31_RS24055 0.82 +1.5 580,959 + EX31_RS24055 0.83 +0.4 580,960 - EX31_RS24055 0.83 +2.5 580,960 - EX31_RS24055 0.83 +0.6 581,024 + EX31_RS24055 0.87 +0.9 581,069 + EX31_RS24055 0.89 -1.5 581,120 + +2.5 581,120 + +1.2 581,245 + -0.7 581,296 + -0.1 581,296 + +0.7 581,296 + -1.1 581,297 - +0.9 581,297 - +0.5 581,297 - +0.7 581,297 - -0.4 581,331 + -1.9 581,331 + -0.4 581,332 - +0.1 581,332 - +0.2 581,477 + -1.8 581,477 + +0.8 581,477 + +0.9 581,478 - -0.3 581,478 - -0.1 581,478 - -0.6 581,478 - -0.2 581,478 - +1.7 581,509 - -1.1 581,788 - EX31_RS24060 0.22 +0.6 581,885 - EX31_RS24060 0.29 +0.3 581,923 + EX31_RS24060 0.32 -0.7 581,923 + EX31_RS24060 0.32 +0.2 581,924 - EX31_RS24060 0.32 -0.4 581,961 + EX31_RS24060 0.34 +1.5 581,961 + EX31_RS24060 0.34 -0.4 582,001 + EX31_RS24060 0.37 -0.9 582,001 + EX31_RS24060 0.37 +0.4 582,001 + EX31_RS24060 0.37 -1.9 582,001 + EX31_RS24060 0.37 -0.1 582,001 + EX31_RS24060 0.37 +0.9 582,001 + EX31_RS24060 0.37 -1.4 582,002 - EX31_RS24060 0.37 +2.3 582,002 - EX31_RS24060 0.37 +1.5 582,002 - EX31_RS24060 0.37 -0.1 582,002 - EX31_RS24060 0.37 +0.9 582,002 - EX31_RS24060 0.37 -0.7 582,042 - EX31_RS24060 0.40 -0.7 582,203 + EX31_RS24060 0.52 +1.3 582,214 + EX31_RS24060 0.53 -1.4 582,214 + EX31_RS24060 0.53 +0.4 582,214 + EX31_RS24060 0.53 -0.9 582,214 + EX31_RS24060 0.53 +2.2 582,215 - EX31_RS24060 0.53 -0.1 582,215 - EX31_RS24060 0.53 +0.7 582,215 - EX31_RS24060 0.53 +0.4 582,215 - EX31_RS24060 0.53 -0.3 582,215 - EX31_RS24060 0.53 +0.2 582,215 - EX31_RS24060 0.53 +1.0 582,215 - EX31_RS24060 0.53 -0.3
Or see this region's nucleotide sequence