Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21920 and EX31_RS21925 are separated by 46 nucleotides EX31_RS21925 and EX31_RS21930 are separated by 34 nucleotides EX31_RS21930 and EX31_RS21935 are separated by 137 nucleotides
EX31_RS21920: EX31_RS21920 - PhnD/SsuA/transferrin family substrate-binding protein, at 129,257 to 130,063
_RS21920
EX31_RS21925: EX31_RS21925 - 3-mercaptopyruvate sulfurtransferase, at 130,110 to 130,955
_RS21925
EX31_RS21930: EX31_RS21930 - GNAT family N-acetyltransferase, at 130,990 to 131,538
_RS21930
EX31_RS21935: EX31_RS21935 - helix-turn-helix domain-containing protein, at 131,676 to 132,467
_RS21935
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 130.008 kb on + strand at 130.008 kb on + strand at 130.008 kb on + strand at 130.009 kb on - strand at 130.142 kb on + strand at 130.171 kb on + strand at 130.188 kb on - strand at 130.560 kb on - strand, within EX31_RS21925 at 130.560 kb on - strand, within EX31_RS21925 at 130.560 kb on - strand, within EX31_RS21925 at 130.602 kb on + strand, within EX31_RS21925 at 130.602 kb on + strand, within EX31_RS21925 at 130.603 kb on - strand, within EX31_RS21925 at 130.657 kb on - strand, within EX31_RS21925 at 130.672 kb on + strand, within EX31_RS21925 at 130.673 kb on - strand, within EX31_RS21925 at 130.673 kb on - strand, within EX31_RS21925 at 130.795 kb on + strand, within EX31_RS21925 at 130.796 kb on - strand, within EX31_RS21925 at 130.796 kb on - strand, within EX31_RS21925 at 130.796 kb on - strand, within EX31_RS21925 at 130.796 kb on - strand, within EX31_RS21925 at 130.826 kb on - strand, within EX31_RS21925 at 130.853 kb on + strand, within EX31_RS21925 at 130.871 kb on + strand at 130.928 kb on + strand at 130.928 kb on + strand at 130.928 kb on + strand at 130.928 kb on + strand at 130.929 kb on - strand at 130.932 kb on + strand at 130.932 kb on + strand at 130.932 kb on + strand at 130.932 kb on + strand at 130.933 kb on - strand at 130.933 kb on - strand at 130.933 kb on - strand at 131.015 kb on + strand at 131.015 kb on + strand at 131.016 kb on - strand at 131.016 kb on - strand at 131.016 kb on - strand at 131.016 kb on - strand at 131.016 kb on - strand at 131.046 kb on - strand, within EX31_RS21930 at 131.048 kb on + strand, within EX31_RS21930 at 131.049 kb on - strand, within EX31_RS21930 at 131.049 kb on - strand, within EX31_RS21930 at 131.218 kb on - strand, within EX31_RS21930 at 131.220 kb on - strand, within EX31_RS21930 at 131.257 kb on - strand, within EX31_RS21930 at 131.257 kb on - strand, within EX31_RS21930 at 131.258 kb on + strand, within EX31_RS21930 at 131.320 kb on + strand, within EX31_RS21930 at 131.321 kb on - strand, within EX31_RS21930 at 131.321 kb on - strand, within EX31_RS21930 at 131.321 kb on - strand, within EX31_RS21930 at 131.321 kb on - strand, within EX31_RS21930 at 131.376 kb on - strand, within EX31_RS21930 at 131.376 kb on - strand, within EX31_RS21930 at 131.399 kb on + strand, within EX31_RS21930 at 131.400 kb on - strand, within EX31_RS21930 at 131.400 kb on - strand, within EX31_RS21930 at 131.404 kb on - strand, within EX31_RS21930 at 131.409 kb on + strand, within EX31_RS21930 at 131.410 kb on - strand, within EX31_RS21930 at 131.410 kb on - strand, within EX31_RS21930 at 131.519 kb on + strand at 131.519 kb on + strand at 131.519 kb on + strand at 131.520 kb on - strand at 131.520 kb on - strand at 131.569 kb on + strand at 131.569 kb on + strand at 131.569 kb on + strand at 131.570 kb on - strand at 131.573 kb on + strand at 131.601 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.705 kb on + strand at 131.705 kb on + strand at 131.705 kb on + strand at 131.705 kb on + strand at 131.705 kb on + strand at 131.705 kb on + strand at 131.705 kb on + strand at 131.706 kb on - strand at 131.706 kb on - strand at 131.706 kb on - strand at 131.706 kb on - strand at 131.706 kb on - strand at 131.706 kb on - strand at 131.717 kb on - strand at 131.862 kb on + strand, within EX31_RS21935 at 131.893 kb on + strand, within EX31_RS21935 at 131.894 kb on - strand, within EX31_RS21935 at 131.894 kb on - strand, within EX31_RS21935 at 131.987 kb on + strand, within EX31_RS21935 at 131.988 kb on - strand, within EX31_RS21935 at 131.988 kb on - strand, within EX31_RS21935 at 131.988 kb on - strand, within EX31_RS21935 at 132.002 kb on + strand, within EX31_RS21935 at 132.002 kb on + strand, within EX31_RS21935 at 132.003 kb on - strand, within EX31_RS21935 at 132.003 kb on - strand, within EX31_RS21935 at 132.066 kb on + strand, within EX31_RS21935 at 132.067 kb on - strand, within EX31_RS21935 at 132.067 kb on - strand, within EX31_RS21935 at 132.077 kb on + strand, within EX31_RS21935 at 132.078 kb on - strand, within EX31_RS21935 at 132.092 kb on - strand, within EX31_RS21935 at 132.156 kb on + strand, within EX31_RS21935 at 132.159 kb on + strand, within EX31_RS21935 at 132.160 kb on - strand, within EX31_RS21935 at 132.160 kb on - strand, within EX31_RS21935 at 132.160 kb on - strand, within EX31_RS21935 at 132.160 kb on - strand, within EX31_RS21935 at 132.160 kb on - strand, within EX31_RS21935 at 132.192 kb on + strand, within EX31_RS21935 at 132.192 kb on + strand, within EX31_RS21935 at 132.196 kb on + strand, within EX31_RS21935 at 132.196 kb on + strand, within EX31_RS21935 at 132.197 kb on - strand, within EX31_RS21935 at 132.197 kb on - strand, within EX31_RS21935 at 132.290 kb on + strand, within EX31_RS21935 at 132.290 kb on + strand, within EX31_RS21935 at 132.290 kb on + strand, within EX31_RS21935 at 132.291 kb on - strand, within EX31_RS21935 at 132.291 kb on - strand, within EX31_RS21935 at 132.291 kb on - strand, within EX31_RS21935 at 132.291 kb on - strand, within EX31_RS21935 at 132.292 kb on + strand, within EX31_RS21935 at 132.459 kb on - strand at 132.467 kb on + strand at 132.468 kb on - strand at 132.470 kb on + strand at 132.470 kb on + strand at 132.471 kb on - strand at 132.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 130,008 + -0.8 130,008 + -2.1 130,008 + +0.5 130,009 - +1.7 130,142 + +1.1 130,171 + +0.3 130,188 - +0.4 130,560 - EX31_RS21925 0.53 +0.8 130,560 - EX31_RS21925 0.53 +0.4 130,560 - EX31_RS21925 0.53 -0.4 130,602 + EX31_RS21925 0.58 +0.7 130,602 + EX31_RS21925 0.58 +2.1 130,603 - EX31_RS21925 0.58 +0.5 130,657 - EX31_RS21925 0.65 +0.3 130,672 + EX31_RS21925 0.66 +0.8 130,673 - EX31_RS21925 0.67 +0.5 130,673 - EX31_RS21925 0.67 +0.5 130,795 + EX31_RS21925 0.81 -0.1 130,796 - EX31_RS21925 0.81 -0.9 130,796 - EX31_RS21925 0.81 -2.6 130,796 - EX31_RS21925 0.81 -0.7 130,796 - EX31_RS21925 0.81 +0.1 130,826 - EX31_RS21925 0.85 +0.7 130,853 + EX31_RS21925 0.88 -0.9 130,871 + +0.5 130,928 + +1.4 130,928 + -0.4 130,928 + +1.1 130,928 + +0.9 130,929 - -0.8 130,932 + -0.3 130,932 + -0.9 130,932 + -0.9 130,932 + -0.5 130,933 - -0.7 130,933 - +0.4 130,933 - +1.1 131,015 + +1.1 131,015 + -1.2 131,016 - +0.1 131,016 - -1.0 131,016 - +0.6 131,016 - +0.6 131,016 - +1.4 131,046 - EX31_RS21930 0.10 +1.1 131,048 + EX31_RS21930 0.11 +0.1 131,049 - EX31_RS21930 0.11 +1.3 131,049 - EX31_RS21930 0.11 +1.5 131,218 - EX31_RS21930 0.42 +0.3 131,220 - EX31_RS21930 0.42 +0.5 131,257 - EX31_RS21930 0.49 +0.1 131,257 - EX31_RS21930 0.49 +2.1 131,258 + EX31_RS21930 0.49 +0.1 131,320 + EX31_RS21930 0.60 +1.1 131,321 - EX31_RS21930 0.60 +1.4 131,321 - EX31_RS21930 0.60 -0.3 131,321 - EX31_RS21930 0.60 -1.4 131,321 - EX31_RS21930 0.60 +0.5 131,376 - EX31_RS21930 0.70 +1.0 131,376 - EX31_RS21930 0.70 +0.5 131,399 + EX31_RS21930 0.74 +1.1 131,400 - EX31_RS21930 0.75 -0.0 131,400 - EX31_RS21930 0.75 +0.5 131,404 - EX31_RS21930 0.75 -1.1 131,409 + EX31_RS21930 0.76 -1.7 131,410 - EX31_RS21930 0.77 +0.5 131,410 - EX31_RS21930 0.77 -1.4 131,519 + +0.5 131,519 + +1.3 131,519 + +0.1 131,520 - +0.4 131,520 - -0.0 131,569 + +1.1 131,569 + -0.9 131,569 + +1.1 131,570 - +1.1 131,573 + -0.2 131,601 - +0.8 131,614 - +0.9 131,614 - +0.6 131,614 - -2.5 131,705 + +1.1 131,705 + -0.3 131,705 + -0.2 131,705 + -1.7 131,705 + +1.1 131,705 + +0.8 131,705 + +1.1 131,706 - -0.2 131,706 - +0.8 131,706 - +1.1 131,706 - -0.8 131,706 - -1.2 131,706 - +1.5 131,717 - -3.2 131,862 + EX31_RS21935 0.23 -1.1 131,893 + EX31_RS21935 0.27 +1.1 131,894 - EX31_RS21935 0.28 +0.1 131,894 - EX31_RS21935 0.28 -1.6 131,987 + EX31_RS21935 0.39 -0.7 131,988 - EX31_RS21935 0.39 +0.5 131,988 - EX31_RS21935 0.39 -1.2 131,988 - EX31_RS21935 0.39 -0.8 132,002 + EX31_RS21935 0.41 -2.8 132,002 + EX31_RS21935 0.41 +0.7 132,003 - EX31_RS21935 0.41 -0.2 132,003 - EX31_RS21935 0.41 -0.7 132,066 + EX31_RS21935 0.49 +0.1 132,067 - EX31_RS21935 0.49 -0.5 132,067 - EX31_RS21935 0.49 -1.5 132,077 + EX31_RS21935 0.51 -0.5 132,078 - EX31_RS21935 0.51 +0.5 132,092 - EX31_RS21935 0.53 +0.8 132,156 + EX31_RS21935 0.61 -0.8 132,159 + EX31_RS21935 0.61 +0.1 132,160 - EX31_RS21935 0.61 +0.1 132,160 - EX31_RS21935 0.61 +1.1 132,160 - EX31_RS21935 0.61 +1.3 132,160 - EX31_RS21935 0.61 -0.1 132,160 - EX31_RS21935 0.61 -2.5 132,192 + EX31_RS21935 0.65 -1.5 132,192 + EX31_RS21935 0.65 -0.9 132,196 + EX31_RS21935 0.66 -0.8 132,196 + EX31_RS21935 0.66 -0.5 132,197 - EX31_RS21935 0.66 -1.4 132,197 - EX31_RS21935 0.66 -0.7 132,290 + EX31_RS21935 0.78 +0.9 132,290 + EX31_RS21935 0.78 +1.0 132,290 + EX31_RS21935 0.78 +0.9 132,291 - EX31_RS21935 0.78 -0.0 132,291 - EX31_RS21935 0.78 -0.2 132,291 - EX31_RS21935 0.78 -0.4 132,291 - EX31_RS21935 0.78 +0.1 132,292 + EX31_RS21935 0.78 -1.2 132,459 - +0.6 132,467 + -1.5 132,468 - -0.1 132,470 + +0.4 132,470 + +3.1 132,471 - +0.5 132,479 - +0.7
Or see this region's nucleotide sequence