Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21785 and EX31_RS21790 are separated by 156 nucleotides EX31_RS21790 and EX31_RS21795 are separated by 63 nucleotides
EX31_RS21785: EX31_RS21785 - ATP-dependent RNA helicase SrmB, at 99,650 to 100,978
_RS21785
EX31_RS21790: EX31_RS21790 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 101,135 to 101,881
_RS21790
EX31_RS21795: EX31_RS21795 - L-aspartate oxidase, at 101,945 to 103,582
_RS21795
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.150 kb on - strand, within EX31_RS21785 at 100.159 kb on + strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.211 kb on - strand, within EX31_RS21785 at 100.277 kb on - strand, within EX31_RS21785 at 100.556 kb on - strand, within EX31_RS21785 at 100.561 kb on - strand, within EX31_RS21785 at 100.561 kb on - strand, within EX31_RS21785 at 100.630 kb on + strand, within EX31_RS21785 at 100.630 kb on + strand, within EX31_RS21785 at 100.631 kb on - strand, within EX31_RS21785 at 100.631 kb on - strand, within EX31_RS21785 at 100.631 kb on - strand, within EX31_RS21785 at 100.631 kb on - strand, within EX31_RS21785 at 100.631 kb on - strand, within EX31_RS21785 at 100.631 kb on - strand, within EX31_RS21785 at 100.632 kb on + strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.633 kb on - strand, within EX31_RS21785 at 100.673 kb on - strand, within EX31_RS21785 at 100.673 kb on - strand, within EX31_RS21785 at 100.673 kb on - strand, within EX31_RS21785 at 100.897 kb on + strand at 100.907 kb on - strand at 100.909 kb on - strand at 100.971 kb on - strand at 100.989 kb on + strand at 100.990 kb on - strand at 100.990 kb on - strand at 101.005 kb on + strand at 101.007 kb on + strand at 101.008 kb on - strand at 101.008 kb on - strand at 101.008 kb on - strand at 101.016 kb on + strand at 101.033 kb on + strand at 101.033 kb on + strand at 101.033 kb on + strand at 101.034 kb on - strand at 101.034 kb on - strand at 101.034 kb on - strand at 101.034 kb on - strand at 101.034 kb on - strand at 101.037 kb on + strand at 101.037 kb on + strand at 101.038 kb on - strand at 101.038 kb on - strand at 101.038 kb on - strand at 101.038 kb on - strand at 101.038 kb on - strand at 101.057 kb on + strand at 101.057 kb on + strand at 101.058 kb on - strand at 101.077 kb on + strand at 101.077 kb on + strand at 101.077 kb on + strand at 101.078 kb on - strand at 101.078 kb on - strand at 101.078 kb on - strand at 101.082 kb on + strand at 101.083 kb on - strand at 101.083 kb on - strand at 101.098 kb on + strand at 101.099 kb on - strand at 101.099 kb on - strand at 101.099 kb on - strand at 101.099 kb on - strand at 101.118 kb on + strand at 101.118 kb on + strand at 101.118 kb on + strand at 101.122 kb on + strand at 101.122 kb on + strand at 101.123 kb on - strand at 101.146 kb on - strand at 101.166 kb on + strand at 101.166 kb on + strand at 101.183 kb on - strand at 101.188 kb on + strand at 101.189 kb on - strand at 101.189 kb on - strand at 101.294 kb on - strand, within EX31_RS21790 at 101.342 kb on - strand, within EX31_RS21790 at 101.342 kb on - strand, within EX31_RS21790 at 101.444 kb on + strand, within EX31_RS21790 at 101.444 kb on + strand, within EX31_RS21790 at 101.445 kb on - strand, within EX31_RS21790 at 101.445 kb on - strand, within EX31_RS21790 at 101.445 kb on - strand, within EX31_RS21790 at 101.459 kb on - strand, within EX31_RS21790 at 101.465 kb on + strand, within EX31_RS21790 at 101.465 kb on + strand, within EX31_RS21790 at 101.465 kb on + strand, within EX31_RS21790 at 101.465 kb on + strand, within EX31_RS21790 at 101.465 kb on + strand, within EX31_RS21790 at 101.465 kb on + strand, within EX31_RS21790 at 101.465 kb on + strand, within EX31_RS21790 at 101.466 kb on - strand, within EX31_RS21790 at 101.490 kb on - strand, within EX31_RS21790 at 101.517 kb on - strand, within EX31_RS21790 at 101.517 kb on - strand, within EX31_RS21790 at 101.611 kb on + strand, within EX31_RS21790 at 101.611 kb on + strand, within EX31_RS21790 at 101.611 kb on + strand, within EX31_RS21790 at 101.611 kb on + strand, within EX31_RS21790 at 101.611 kb on + strand, within EX31_RS21790 at 101.612 kb on - strand, within EX31_RS21790 at 101.612 kb on - strand, within EX31_RS21790 at 101.621 kb on - strand, within EX31_RS21790 at 101.638 kb on + strand, within EX31_RS21790 at 101.639 kb on - strand, within EX31_RS21790 at 101.639 kb on - strand, within EX31_RS21790 at 101.654 kb on + strand, within EX31_RS21790 at 101.655 kb on - strand, within EX31_RS21790 at 101.769 kb on + strand, within EX31_RS21790 at 101.770 kb on - strand, within EX31_RS21790 at 101.770 kb on - strand, within EX31_RS21790 at 101.831 kb on + strand at 101.943 kb on + strand at 101.943 kb on + strand at 101.943 kb on + strand at 101.944 kb on - strand at 101.944 kb on - strand at 101.947 kb on - strand at 101.981 kb on + strand at 101.981 kb on + strand at 101.982 kb on - strand at 101.992 kb on - strand at 102.100 kb on + strand at 102.115 kb on - strand, within EX31_RS21795 at 102.115 kb on - strand, within EX31_RS21795 at 102.117 kb on + strand, within EX31_RS21795 at 102.117 kb on + strand, within EX31_RS21795 at 102.117 kb on + strand, within EX31_RS21795 at 102.117 kb on + strand, within EX31_RS21795 at 102.117 kb on + strand, within EX31_RS21795 at 102.117 kb on + strand, within EX31_RS21795 at 102.118 kb on - strand, within EX31_RS21795 at 102.118 kb on - strand, within EX31_RS21795 at 102.118 kb on - strand, within EX31_RS21795 at 102.118 kb on - strand, within EX31_RS21795 at 102.185 kb on + strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.186 kb on - strand, within EX31_RS21795 at 102.194 kb on + strand, within EX31_RS21795 at 102.194 kb on + strand, within EX31_RS21795 at 102.194 kb on + strand, within EX31_RS21795 at 102.198 kb on + strand, within EX31_RS21795 at 102.198 kb on + strand, within EX31_RS21795 at 102.198 kb on + strand, within EX31_RS21795 at 102.198 kb on + strand, within EX31_RS21795 at 102.198 kb on + strand, within EX31_RS21795 at 102.198 kb on + strand, within EX31_RS21795 at 102.199 kb on - strand, within EX31_RS21795 at 102.199 kb on - strand, within EX31_RS21795 at 102.199 kb on - strand, within EX31_RS21795 at 102.199 kb on - strand, within EX31_RS21795 at 102.199 kb on - strand, within EX31_RS21795 at 102.208 kb on + strand, within EX31_RS21795 at 102.208 kb on + strand, within EX31_RS21795 at 102.208 kb on + strand, within EX31_RS21795 at 102.209 kb on - strand, within EX31_RS21795 at 102.209 kb on - strand, within EX31_RS21795 at 102.209 kb on - strand, within EX31_RS21795 at 102.209 kb on - strand, within EX31_RS21795 at 102.209 kb on - strand, within EX31_RS21795 at 102.209 kb on - strand, within EX31_RS21795 at 102.209 kb on - strand, within EX31_RS21795 at 102.209 kb on - strand, within EX31_RS21795 at 102.232 kb on + strand, within EX31_RS21795 at 102.233 kb on - strand, within EX31_RS21795 at 102.262 kb on + strand, within EX31_RS21795 at 102.263 kb on - strand, within EX31_RS21795 at 102.292 kb on + strand, within EX31_RS21795 at 102.325 kb on + strand, within EX31_RS21795 at 102.325 kb on + strand, within EX31_RS21795 at 102.325 kb on + strand, within EX31_RS21795 at 102.325 kb on + strand, within EX31_RS21795 at 102.326 kb on - strand, within EX31_RS21795 at 102.329 kb on + strand, within EX31_RS21795 at 102.329 kb on + strand, within EX31_RS21795 at 102.330 kb on - strand, within EX31_RS21795 at 102.330 kb on - strand, within EX31_RS21795 at 102.330 kb on - strand, within EX31_RS21795 at 102.330 kb on - strand, within EX31_RS21795 at 102.330 kb on - strand, within EX31_RS21795 at 102.331 kb on + strand, within EX31_RS21795 at 102.332 kb on - strand, within EX31_RS21795 at 102.332 kb on - strand, within EX31_RS21795 at 102.332 kb on - strand, within EX31_RS21795 at 102.355 kb on - strand, within EX31_RS21795 at 102.379 kb on + strand, within EX31_RS21795 at 102.380 kb on - strand, within EX31_RS21795 at 102.413 kb on - strand, within EX31_RS21795 at 102.415 kb on - strand, within EX31_RS21795 at 102.415 kb on - strand, within EX31_RS21795 at 102.415 kb on - strand, within EX31_RS21795 at 102.415 kb on - strand, within EX31_RS21795 at 102.415 kb on - strand, within EX31_RS21795 at 102.415 kb on - strand, within EX31_RS21795 at 102.435 kb on + strand, within EX31_RS21795 at 102.435 kb on + strand, within EX31_RS21795 at 102.435 kb on + strand, within EX31_RS21795 at 102.493 kb on - strand, within EX31_RS21795 at 102.493 kb on - strand, within EX31_RS21795 at 102.539 kb on - strand, within EX31_RS21795 at 102.618 kb on + strand, within EX31_RS21795 at 102.618 kb on + strand, within EX31_RS21795 at 102.618 kb on + strand, within EX31_RS21795 at 102.618 kb on + strand, within EX31_RS21795 at 102.618 kb on + strand, within EX31_RS21795 at 102.618 kb on + strand, within EX31_RS21795 at 102.618 kb on + strand, within EX31_RS21795 at 102.619 kb on - strand, within EX31_RS21795 at 102.619 kb on - strand, within EX31_RS21795 at 102.619 kb on - strand, within EX31_RS21795 at 102.619 kb on - strand, within EX31_RS21795 at 102.619 kb on - strand, within EX31_RS21795 at 102.619 kb on - strand, within EX31_RS21795 at 102.619 kb on - strand, within EX31_RS21795 at 102.715 kb on + strand, within EX31_RS21795 at 102.716 kb on - strand, within EX31_RS21795 at 102.784 kb on + strand, within EX31_RS21795 at 102.785 kb on - strand, within EX31_RS21795 at 102.785 kb on - strand, within EX31_RS21795 at 102.802 kb on - strand, within EX31_RS21795 at 102.802 kb on - strand, within EX31_RS21795
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 100,150 - EX31_RS21785 0.38 +1.1 100,159 + EX31_RS21785 0.38 +1.1 100,160 - EX31_RS21785 0.38 +0.3 100,160 - EX31_RS21785 0.38 +1.1 100,160 - EX31_RS21785 0.38 -0.9 100,160 - EX31_RS21785 0.38 -0.9 100,160 - EX31_RS21785 0.38 +2.7 100,211 - EX31_RS21785 0.42 -0.7 100,277 - EX31_RS21785 0.47 +0.1 100,556 - EX31_RS21785 0.68 +0.1 100,561 - EX31_RS21785 0.69 +0.4 100,561 - EX31_RS21785 0.69 -1.5 100,630 + EX31_RS21785 0.74 -0.5 100,630 + EX31_RS21785 0.74 -1.2 100,631 - EX31_RS21785 0.74 +1.1 100,631 - EX31_RS21785 0.74 -0.1 100,631 - EX31_RS21785 0.74 -2.9 100,631 - EX31_RS21785 0.74 -0.8 100,631 - EX31_RS21785 0.74 -2.5 100,631 - EX31_RS21785 0.74 -0.9 100,632 + EX31_RS21785 0.74 -1.5 100,633 - EX31_RS21785 0.74 +0.1 100,633 - EX31_RS21785 0.74 -0.8 100,633 - EX31_RS21785 0.74 -1.1 100,633 - EX31_RS21785 0.74 -2.5 100,633 - EX31_RS21785 0.74 -1.7 100,633 - EX31_RS21785 0.74 -0.2 100,633 - EX31_RS21785 0.74 -0.5 100,633 - EX31_RS21785 0.74 -1.2 100,633 - EX31_RS21785 0.74 +2.7 100,673 - EX31_RS21785 0.77 -1.7 100,673 - EX31_RS21785 0.77 +0.1 100,673 - EX31_RS21785 0.77 +0.1 100,897 + -1.1 100,907 - +0.1 100,909 - -0.9 100,971 - -0.6 100,989 + -0.9 100,990 - -1.1 100,990 - -0.4 101,005 + +1.7 101,007 + +1.8 101,008 - -0.9 101,008 - +0.9 101,008 - +1.1 101,016 + +1.5 101,033 + -0.7 101,033 + -1.0 101,033 + -0.7 101,034 - +0.2 101,034 - -1.0 101,034 - +1.1 101,034 - +0.1 101,034 - +0.1 101,037 + +0.3 101,037 + +0.3 101,038 - +0.6 101,038 - +0.2 101,038 - +1.2 101,038 - +0.1 101,038 - +1.1 101,057 + +1.1 101,057 + -0.8 101,058 - -2.6 101,077 + -0.7 101,077 + -1.0 101,077 + -0.3 101,078 - +0.2 101,078 - -2.2 101,078 - -0.1 101,082 + +0.5 101,083 - +0.1 101,083 - +0.1 101,098 + -0.3 101,099 - +0.1 101,099 - -2.0 101,099 - +0.7 101,099 - -0.5 101,118 + -0.4 101,118 + -0.2 101,118 + -3.2 101,122 + +0.7 101,122 + -1.5 101,123 - +0.7 101,146 - -0.2 101,166 + -1.9 101,166 + -2.2 101,183 - +1.4 101,188 + +1.1 101,189 - -0.2 101,189 - +0.3 101,294 - EX31_RS21790 0.21 +0.1 101,342 - EX31_RS21790 0.28 -1.2 101,342 - EX31_RS21790 0.28 -1.5 101,444 + EX31_RS21790 0.41 +0.1 101,444 + EX31_RS21790 0.41 +0.3 101,445 - EX31_RS21790 0.41 -0.8 101,445 - EX31_RS21790 0.41 -0.0 101,445 - EX31_RS21790 0.41 +0.6 101,459 - EX31_RS21790 0.43 +0.1 101,465 + EX31_RS21790 0.44 -0.9 101,465 + EX31_RS21790 0.44 -2.5 101,465 + EX31_RS21790 0.44 +0.4 101,465 + EX31_RS21790 0.44 +0.9 101,465 + EX31_RS21790 0.44 -2.4 101,465 + EX31_RS21790 0.44 -0.3 101,465 + EX31_RS21790 0.44 +0.9 101,466 - EX31_RS21790 0.44 +0.5 101,490 - EX31_RS21790 0.48 -0.1 101,517 - EX31_RS21790 0.51 +0.6 101,517 - EX31_RS21790 0.51 -1.1 101,611 + EX31_RS21790 0.64 +0.3 101,611 + EX31_RS21790 0.64 -1.1 101,611 + EX31_RS21790 0.64 -2.6 101,611 + EX31_RS21790 0.64 +1.4 101,611 + EX31_RS21790 0.64 -1.6 101,612 - EX31_RS21790 0.64 -0.7 101,612 - EX31_RS21790 0.64 -1.2 101,621 - EX31_RS21790 0.65 -0.5 101,638 + EX31_RS21790 0.67 +0.1 101,639 - EX31_RS21790 0.67 +0.1 101,639 - EX31_RS21790 0.67 +0.7 101,654 + EX31_RS21790 0.69 -0.2 101,655 - EX31_RS21790 0.70 -0.3 101,769 + EX31_RS21790 0.85 -0.5 101,770 - EX31_RS21790 0.85 -1.4 101,770 - EX31_RS21790 0.85 +0.8 101,831 + +1.1 101,943 + -1.7 101,943 + +0.5 101,943 + +0.9 101,944 - -0.5 101,944 - -1.2 101,947 - +0.3 101,981 + -0.2 101,981 + -0.1 101,982 - -1.3 101,992 - -1.2 102,100 + +0.1 102,115 - EX31_RS21795 0.10 -0.9 102,115 - EX31_RS21795 0.10 -0.5 102,117 + EX31_RS21795 0.11 -2.4 102,117 + EX31_RS21795 0.11 -0.3 102,117 + EX31_RS21795 0.11 +0.9 102,117 + EX31_RS21795 0.11 -0.2 102,117 + EX31_RS21795 0.11 +0.6 102,117 + EX31_RS21795 0.11 +0.5 102,118 - EX31_RS21795 0.11 -0.9 102,118 - EX31_RS21795 0.11 -0.6 102,118 - EX31_RS21795 0.11 +1.0 102,118 - EX31_RS21795 0.11 +0.9 102,185 + EX31_RS21795 0.15 +0.1 102,186 - EX31_RS21795 0.15 -0.5 102,186 - EX31_RS21795 0.15 +0.1 102,186 - EX31_RS21795 0.15 -0.3 102,186 - EX31_RS21795 0.15 -0.5 102,186 - EX31_RS21795 0.15 +0.1 102,186 - EX31_RS21795 0.15 -1.2 102,186 - EX31_RS21795 0.15 +0.5 102,186 - EX31_RS21795 0.15 +1.9 102,186 - EX31_RS21795 0.15 +0.5 102,194 + EX31_RS21795 0.15 +1.5 102,194 + EX31_RS21795 0.15 +0.1 102,194 + EX31_RS21795 0.15 -1.5 102,198 + EX31_RS21795 0.15 +0.4 102,198 + EX31_RS21795 0.15 -0.9 102,198 + EX31_RS21795 0.15 -0.7 102,198 + EX31_RS21795 0.15 +0.1 102,198 + EX31_RS21795 0.15 -1.0 102,198 + EX31_RS21795 0.15 -0.8 102,199 - EX31_RS21795 0.16 -2.4 102,199 - EX31_RS21795 0.16 +0.2 102,199 - EX31_RS21795 0.16 +0.9 102,199 - EX31_RS21795 0.16 +0.5 102,199 - EX31_RS21795 0.16 -0.9 102,208 + EX31_RS21795 0.16 +1.2 102,208 + EX31_RS21795 0.16 +0.1 102,208 + EX31_RS21795 0.16 -0.2 102,209 - EX31_RS21795 0.16 -0.3 102,209 - EX31_RS21795 0.16 +1.1 102,209 - EX31_RS21795 0.16 +2.6 102,209 - EX31_RS21795 0.16 -1.5 102,209 - EX31_RS21795 0.16 -0.3 102,209 - EX31_RS21795 0.16 -2.2 102,209 - EX31_RS21795 0.16 +0.7 102,209 - EX31_RS21795 0.16 -1.1 102,232 + EX31_RS21795 0.18 -0.5 102,233 - EX31_RS21795 0.18 +0.6 102,262 + EX31_RS21795 0.19 -0.5 102,263 - EX31_RS21795 0.19 +0.1 102,292 + EX31_RS21795 0.21 +1.1 102,325 + EX31_RS21795 0.23 -0.3 102,325 + EX31_RS21795 0.23 -0.7 102,325 + EX31_RS21795 0.23 -0.9 102,325 + EX31_RS21795 0.23 +0.8 102,326 - EX31_RS21795 0.23 -2.7 102,329 + EX31_RS21795 0.23 -0.5 102,329 + EX31_RS21795 0.23 +1.1 102,330 - EX31_RS21795 0.24 -0.2 102,330 - EX31_RS21795 0.24 -1.2 102,330 - EX31_RS21795 0.24 -1.4 102,330 - EX31_RS21795 0.24 -0.6 102,330 - EX31_RS21795 0.24 -0.9 102,331 + EX31_RS21795 0.24 -1.9 102,332 - EX31_RS21795 0.24 +1.2 102,332 - EX31_RS21795 0.24 +0.2 102,332 - EX31_RS21795 0.24 -0.3 102,355 - EX31_RS21795 0.25 +1.7 102,379 + EX31_RS21795 0.26 +0.7 102,380 - EX31_RS21795 0.27 -0.2 102,413 - EX31_RS21795 0.29 -1.4 102,415 - EX31_RS21795 0.29 +0.1 102,415 - EX31_RS21795 0.29 +0.8 102,415 - EX31_RS21795 0.29 +1.1 102,415 - EX31_RS21795 0.29 -1.9 102,415 - EX31_RS21795 0.29 -0.7 102,415 - EX31_RS21795 0.29 +1.8 102,435 + EX31_RS21795 0.30 +1.1 102,435 + EX31_RS21795 0.30 -0.1 102,435 + EX31_RS21795 0.30 +0.1 102,493 - EX31_RS21795 0.33 +0.6 102,493 - EX31_RS21795 0.33 -0.0 102,539 - EX31_RS21795 0.36 -0.2 102,618 + EX31_RS21795 0.41 +0.5 102,618 + EX31_RS21795 0.41 -0.4 102,618 + EX31_RS21795 0.41 -1.0 102,618 + EX31_RS21795 0.41 -0.0 102,618 + EX31_RS21795 0.41 -1.1 102,618 + EX31_RS21795 0.41 +0.7 102,618 + EX31_RS21795 0.41 +0.4 102,619 - EX31_RS21795 0.41 -0.5 102,619 - EX31_RS21795 0.41 +0.2 102,619 - EX31_RS21795 0.41 +0.4 102,619 - EX31_RS21795 0.41 -1.1 102,619 - EX31_RS21795 0.41 -0.2 102,619 - EX31_RS21795 0.41 +0.4 102,619 - EX31_RS21795 0.41 +0.1 102,715 + EX31_RS21795 0.47 +0.3 102,716 - EX31_RS21795 0.47 -0.1 102,784 + EX31_RS21795 0.51 -2.1 102,785 - EX31_RS21795 0.51 -0.6 102,785 - EX31_RS21795 0.51 -1.5 102,802 - EX31_RS21795 0.52 +0.7 102,802 - EX31_RS21795 0.52 +0.4
Or see this region's nucleotide sequence