Strain Fitness in Rahnella sp. WP5 around EX31_RS20825

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20820 and EX31_RS20825 are separated by 26 nucleotidesEX31_RS20825 and EX31_RS20830 are separated by 34 nucleotides EX31_RS20820: EX31_RS20820 - aldo/keto reductase, at 813,300 to 814,151 _RS20820 EX31_RS20825: EX31_RS20825 - aldo/keto reductase, at 814,178 to 815,167 _RS20825 EX31_RS20830: EX31_RS20830 - LysR family transcriptional regulator, at 815,202 to 816,095 _RS20830 Position (kb) 814 815 816Strain fitness (log2 ratio) -2 -1 0 1 2at 813.275 kb on + strandat 813.275 kb on + strandat 813.276 kb on - strandat 813.276 kb on - strandat 813.294 kb on + strandat 813.294 kb on + strandat 813.294 kb on + strandat 813.294 kb on + strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.295 kb on - strandat 813.311 kb on - strandat 813.311 kb on - strandat 813.445 kb on - strand, within EX31_RS20820at 813.511 kb on + strand, within EX31_RS20820at 813.511 kb on + strand, within EX31_RS20820at 813.511 kb on + strand, within EX31_RS20820at 813.512 kb on - strand, within EX31_RS20820at 813.512 kb on - strand, within EX31_RS20820at 813.512 kb on - strand, within EX31_RS20820at 813.512 kb on - strand, within EX31_RS20820at 813.536 kb on + strand, within EX31_RS20820at 813.543 kb on + strand, within EX31_RS20820at 813.543 kb on + strand, within EX31_RS20820at 813.543 kb on + strand, within EX31_RS20820at 813.554 kb on + strand, within EX31_RS20820at 813.554 kb on + strand, within EX31_RS20820at 813.554 kb on + strand, within EX31_RS20820at 813.555 kb on - strand, within EX31_RS20820at 813.555 kb on - strand, within EX31_RS20820at 813.597 kb on + strand, within EX31_RS20820at 813.597 kb on + strand, within EX31_RS20820at 813.597 kb on + strand, within EX31_RS20820at 813.597 kb on + strand, within EX31_RS20820at 813.597 kb on + strand, within EX31_RS20820at 813.609 kb on + strand, within EX31_RS20820at 813.609 kb on + strand, within EX31_RS20820at 813.610 kb on - strand, within EX31_RS20820at 813.610 kb on - strand, within EX31_RS20820at 813.627 kb on + strand, within EX31_RS20820at 813.866 kb on + strand, within EX31_RS20820at 813.867 kb on - strand, within EX31_RS20820at 813.867 kb on - strand, within EX31_RS20820at 813.915 kb on + strand, within EX31_RS20820at 813.916 kb on - strand, within EX31_RS20820at 813.916 kb on - strand, within EX31_RS20820at 814.001 kb on + strand, within EX31_RS20820at 814.001 kb on + strand, within EX31_RS20820at 814.002 kb on - strand, within EX31_RS20820at 814.002 kb on - strand, within EX31_RS20820at 814.002 kb on - strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.049 kb on + strand, within EX31_RS20820at 814.050 kb on - strand, within EX31_RS20820at 814.050 kb on - strand, within EX31_RS20820at 814.050 kb on - strand, within EX31_RS20820at 814.050 kb on - strand, within EX31_RS20820at 814.050 kb on - strand, within EX31_RS20820at 814.050 kb on - strand, within EX31_RS20820at 814.050 kb on - strand, within EX31_RS20820at 814.149 kb on + strandat 814.149 kb on + strandat 814.150 kb on - strandat 814.168 kb on + strandat 814.168 kb on + strandat 814.169 kb on - strandat 814.190 kb on + strandat 814.273 kb on + strandat 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.347 kb on - strand, within EX31_RS20825at 814.347 kb on - strand, within EX31_RS20825at 814.347 kb on - strand, within EX31_RS20825at 814.386 kb on + strand, within EX31_RS20825at 814.433 kb on - strand, within EX31_RS20825at 814.509 kb on + strand, within EX31_RS20825at 814.509 kb on + strand, within EX31_RS20825at 814.509 kb on + strand, within EX31_RS20825at 814.510 kb on - strand, within EX31_RS20825at 814.510 kb on - strand, within EX31_RS20825at 814.520 kb on - strand, within EX31_RS20825at 814.531 kb on + strand, within EX31_RS20825at 814.531 kb on + strand, within EX31_RS20825at 814.532 kb on - strand, within EX31_RS20825at 814.532 kb on - strand, within EX31_RS20825at 814.532 kb on - strand, within EX31_RS20825at 814.544 kb on + strand, within EX31_RS20825at 814.608 kb on + strand, within EX31_RS20825at 814.609 kb on - strand, within EX31_RS20825at 814.624 kb on + strand, within EX31_RS20825at 814.624 kb on + strand, within EX31_RS20825at 814.681 kb on - strand, within EX31_RS20825at 814.681 kb on - strand, within EX31_RS20825at 814.681 kb on - strand, within EX31_RS20825at 814.681 kb on - strand, within EX31_RS20825at 814.799 kb on - strand, within EX31_RS20825at 814.853 kb on + strand, within EX31_RS20825at 815.132 kb on + strandat 815.132 kb on + strandat 815.133 kb on - strandat 815.169 kb on - strandat 815.204 kb on - strandat 815.269 kb on + strandat 815.270 kb on - strandat 815.270 kb on - strandat 815.270 kb on - strandat 815.272 kb on + strandat 815.272 kb on + strandat 815.273 kb on - strandat 815.278 kb on + strandat 815.278 kb on + strandat 815.337 kb on + strand, within EX31_RS20830at 815.338 kb on - strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.349 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.365 kb on - strand, within EX31_RS20830at 815.365 kb on - strand, within EX31_RS20830at 815.366 kb on + strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.389 kb on - strand, within EX31_RS20830at 815.421 kb on - strand, within EX31_RS20830at 815.421 kb on - strand, within EX31_RS20830at 815.514 kb on - strand, within EX31_RS20830at 815.536 kb on - strand, within EX31_RS20830at 815.575 kb on + strand, within EX31_RS20830at 815.575 kb on + strand, within EX31_RS20830at 815.576 kb on - strand, within EX31_RS20830at 815.691 kb on - strand, within EX31_RS20830at 815.691 kb on - strand, within EX31_RS20830at 815.727 kb on - strand, within EX31_RS20830at 815.802 kb on + strand, within EX31_RS20830at 815.810 kb on + strand, within EX31_RS20830at 815.810 kb on + strand, within EX31_RS20830at 815.811 kb on - strand, within EX31_RS20830at 815.811 kb on - strand, within EX31_RS20830at 815.895 kb on - strand, within EX31_RS20830at 815.895 kb on - strand, within EX31_RS20830at 816.052 kb on - strandat 816.127 kb on + strandat 816.128 kb on - strandat 816.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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813,275 + +1.9
813,275 + +0.2
813,276 - +1.6
813,276 - -0.2
813,294 + +0.4
813,294 + +1.2
813,294 + +0.6
813,294 + +0.2
813,295 - -1.0
813,295 - -0.5
813,295 - -1.4
813,295 - +0.5
813,295 - +0.2
813,295 - -0.3
813,295 - -0.6
813,295 - -1.2
813,295 - +0.4
813,295 - +0.2
813,311 - -0.5
813,311 - +1.7
813,445 - EX31_RS20820 0.17 -1.0
813,511 + EX31_RS20820 0.25 -1.8
813,511 + EX31_RS20820 0.25 +0.5
813,511 + EX31_RS20820 0.25 -1.8
813,512 - EX31_RS20820 0.25 +0.7
813,512 - EX31_RS20820 0.25 -0.4
813,512 - EX31_RS20820 0.25 -1.0
813,512 - EX31_RS20820 0.25 +1.7
813,536 + EX31_RS20820 0.28 -0.6
813,543 + EX31_RS20820 0.29 +0.1
813,543 + EX31_RS20820 0.29 -0.3
813,543 + EX31_RS20820 0.29 +0.1
813,554 + EX31_RS20820 0.30 -0.1
813,554 + EX31_RS20820 0.30 +0.9
813,554 + EX31_RS20820 0.30 +0.7
813,555 - EX31_RS20820 0.30 +0.3
813,555 - EX31_RS20820 0.30 +0.8
813,597 + EX31_RS20820 0.35 -1.3
813,597 + EX31_RS20820 0.35 +0.6
813,597 + EX31_RS20820 0.35 +0.3
813,597 + EX31_RS20820 0.35 +0.1
813,597 + EX31_RS20820 0.35 -0.8
813,609 + EX31_RS20820 0.36 +0.3
813,609 + EX31_RS20820 0.36 +1.2
813,610 - EX31_RS20820 0.36 -0.1
813,610 - EX31_RS20820 0.36 -0.7
813,627 + EX31_RS20820 0.38 +1.1
813,866 + EX31_RS20820 0.66 +0.8
813,867 - EX31_RS20820 0.67 +0.7
813,867 - EX31_RS20820 0.67 -0.6
813,915 + EX31_RS20820 0.72 +0.7
813,916 - EX31_RS20820 0.72 +1.3
813,916 - EX31_RS20820 0.72 -0.8
814,001 + EX31_RS20820 0.82 +1.2
814,001 + EX31_RS20820 0.82 +1.0
814,002 - EX31_RS20820 0.82 -0.1
814,002 - EX31_RS20820 0.82 -1.6
814,002 - EX31_RS20820 0.82 -0.1
814,049 + EX31_RS20820 0.88 +0.3
814,049 + EX31_RS20820 0.88 -0.5
814,049 + EX31_RS20820 0.88 -1.5
814,049 + EX31_RS20820 0.88 +0.6
814,049 + EX31_RS20820 0.88 -0.1
814,049 + EX31_RS20820 0.88 +0.5
814,049 + EX31_RS20820 0.88 -0.4
814,049 + EX31_RS20820 0.88 -1.3
814,049 + EX31_RS20820 0.88 -2.4
814,049 + EX31_RS20820 0.88 -0.1
814,049 + EX31_RS20820 0.88 -0.3
814,049 + EX31_RS20820 0.88 -2.3
814,050 - EX31_RS20820 0.88 -0.2
814,050 - EX31_RS20820 0.88 -0.6
814,050 - EX31_RS20820 0.88 +0.4
814,050 - EX31_RS20820 0.88 -0.2
814,050 - EX31_RS20820 0.88 -0.3
814,050 - EX31_RS20820 0.88 +1.6
814,050 - EX31_RS20820 0.88 -2.4
814,149 + +0.7
814,149 + +0.6
814,150 - -1.0
814,168 + -0.9
814,168 + -0.5
814,169 - -2.4
814,190 + -0.6
814,273 + +1.2
814,346 + EX31_RS20825 0.17 +1.0
814,346 + EX31_RS20825 0.17 +1.2
814,346 + EX31_RS20825 0.17 -1.7
814,346 + EX31_RS20825 0.17 -0.0
814,346 + EX31_RS20825 0.17 -0.4
814,346 + EX31_RS20825 0.17 -0.1
814,347 - EX31_RS20825 0.17 -0.4
814,347 - EX31_RS20825 0.17 -1.5
814,347 - EX31_RS20825 0.17 +1.4
814,386 + EX31_RS20825 0.21 -1.8
814,433 - EX31_RS20825 0.26 -0.1
814,509 + EX31_RS20825 0.33 -2.0
814,509 + EX31_RS20825 0.33 +0.7
814,509 + EX31_RS20825 0.33 -0.7
814,510 - EX31_RS20825 0.34 +0.3
814,510 - EX31_RS20825 0.34 -1.4
814,520 - EX31_RS20825 0.35 +0.7
814,531 + EX31_RS20825 0.36 -1.6
814,531 + EX31_RS20825 0.36 +0.4
814,532 - EX31_RS20825 0.36 -0.5
814,532 - EX31_RS20825 0.36 -1.4
814,532 - EX31_RS20825 0.36 -1.7
814,544 + EX31_RS20825 0.37 -0.4
814,608 + EX31_RS20825 0.43 -0.8
814,609 - EX31_RS20825 0.44 -1.2
814,624 + EX31_RS20825 0.45 +0.2
814,624 + EX31_RS20825 0.45 -0.1
814,681 - EX31_RS20825 0.51 -2.5
814,681 - EX31_RS20825 0.51 -0.3
814,681 - EX31_RS20825 0.51 -1.7
814,681 - EX31_RS20825 0.51 -1.5
814,799 - EX31_RS20825 0.63 +0.6
814,853 + EX31_RS20825 0.68 +0.4
815,132 + +2.2
815,132 + +1.5
815,133 - -0.2
815,169 - -0.2
815,204 - +0.9
815,269 + +0.9
815,270 - -0.2
815,270 - -0.7
815,270 - +1.2
815,272 + -0.8
815,272 + -0.8
815,273 - +1.3
815,278 + -1.4
815,278 + -1.2
815,337 + EX31_RS20830 0.15 +1.2
815,338 - EX31_RS20830 0.15 -1.5
815,339 + EX31_RS20830 0.15 +1.3
815,339 + EX31_RS20830 0.15 +0.6
815,339 + EX31_RS20830 0.15 -0.7
815,339 + EX31_RS20830 0.15 -1.4
815,339 + EX31_RS20830 0.15 -1.6
815,340 - EX31_RS20830 0.15 +0.2
815,340 - EX31_RS20830 0.15 -1.2
815,340 - EX31_RS20830 0.15 +0.7
815,340 - EX31_RS20830 0.15 +0.4
815,340 - EX31_RS20830 0.15 -0.8
815,340 - EX31_RS20830 0.15 +0.8
815,340 - EX31_RS20830 0.15 -0.2
815,340 - EX31_RS20830 0.15 -0.6
815,342 - EX31_RS20830 0.16 -0.8
815,342 - EX31_RS20830 0.16 +0.9
815,342 - EX31_RS20830 0.16 +0.4
815,342 - EX31_RS20830 0.16 +0.9
815,342 - EX31_RS20830 0.16 +0.2
815,342 - EX31_RS20830 0.16 -1.2
815,349 + EX31_RS20830 0.16 +0.4
815,364 + EX31_RS20830 0.18 +0.2
815,364 + EX31_RS20830 0.18 -0.0
815,364 + EX31_RS20830 0.18 -0.8
815,365 - EX31_RS20830 0.18 -0.2
815,365 - EX31_RS20830 0.18 +1.0
815,366 + EX31_RS20830 0.18 -2.0
815,367 - EX31_RS20830 0.18 -0.0
815,367 - EX31_RS20830 0.18 -1.1
815,367 - EX31_RS20830 0.18 -0.2
815,367 - EX31_RS20830 0.18 +1.2
815,367 - EX31_RS20830 0.18 -0.2
815,367 - EX31_RS20830 0.18 +0.6
815,389 - EX31_RS20830 0.21 +2.7
815,421 - EX31_RS20830 0.24 +0.8
815,421 - EX31_RS20830 0.24 -0.6
815,514 - EX31_RS20830 0.35 -0.3
815,536 - EX31_RS20830 0.37 +0.4
815,575 + EX31_RS20830 0.42 +0.4
815,575 + EX31_RS20830 0.42 -0.0
815,576 - EX31_RS20830 0.42 +0.6
815,691 - EX31_RS20830 0.55 -0.8
815,691 - EX31_RS20830 0.55 +1.2
815,727 - EX31_RS20830 0.59 +0.2
815,802 + EX31_RS20830 0.67 +0.2
815,810 + EX31_RS20830 0.68 -0.8
815,810 + EX31_RS20830 0.68 -1.2
815,811 - EX31_RS20830 0.68 -0.0
815,811 - EX31_RS20830 0.68 +1.2
815,895 - EX31_RS20830 0.78 -0.4
815,895 - EX31_RS20830 0.78 +0.4
816,052 - +1.0
816,127 + +0.8
816,128 - -0.1
816,128 - +1.6

Or see this region's nucleotide sequence