Strain Fitness in Rahnella sp. WP5 around EX31_RS18885

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18875 and EX31_RS18880 are separated by 26 nucleotidesEX31_RS18880 and EX31_RS18885 overlap by 8 nucleotidesEX31_RS18885 and EX31_RS18890 are separated by 81 nucleotides EX31_RS18875: EX31_RS18875 - hypothetical protein, at 362,138 to 362,761 _RS18875 EX31_RS18880: EX31_RS18880 - thioredoxin reductase, at 362,788 to 363,429 _RS18880 EX31_RS18885: EX31_RS18885 - molybdopterin-dependent oxidoreductase, at 363,422 to 364,186 _RS18885 EX31_RS18890: EX31_RS18890 - outer membrane protein OmpX, at 364,268 to 364,801 _RS18890 Position (kb) 363 364 365Strain fitness (log2 ratio) -2 -1 0 1 2at 362.442 kb on + strand, within EX31_RS18875at 362.442 kb on + strand, within EX31_RS18875at 362.443 kb on - strand, within EX31_RS18875at 362.513 kb on - strand, within EX31_RS18875at 362.513 kb on - strand, within EX31_RS18875at 362.616 kb on + strand, within EX31_RS18875at 362.669 kb on - strand, within EX31_RS18875at 362.688 kb on + strand, within EX31_RS18875at 362.722 kb on + strandat 362.723 kb on - strandat 362.723 kb on - strandat 362.759 kb on + strandat 362.760 kb on - strandat 362.760 kb on - strandat 362.783 kb on + strandat 362.905 kb on + strand, within EX31_RS18880at 362.905 kb on + strand, within EX31_RS18880at 362.906 kb on - strand, within EX31_RS18880at 362.906 kb on - strand, within EX31_RS18880at 362.906 kb on - strand, within EX31_RS18880at 362.977 kb on - strand, within EX31_RS18880at 363.028 kb on + strand, within EX31_RS18880at 363.028 kb on + strand, within EX31_RS18880at 363.029 kb on - strand, within EX31_RS18880at 363.029 kb on - strand, within EX31_RS18880at 363.029 kb on - strand, within EX31_RS18880at 363.151 kb on + strand, within EX31_RS18880at 363.175 kb on + strand, within EX31_RS18880at 363.175 kb on + strand, within EX31_RS18880at 363.175 kb on + strand, within EX31_RS18880at 363.175 kb on + strand, within EX31_RS18880at 363.175 kb on + strand, within EX31_RS18880at 363.176 kb on - strand, within EX31_RS18880at 363.176 kb on - strand, within EX31_RS18880at 363.176 kb on - strand, within EX31_RS18880at 363.176 kb on - strand, within EX31_RS18880at 363.290 kb on - strand, within EX31_RS18880at 363.333 kb on + strand, within EX31_RS18880at 363.341 kb on + strand, within EX31_RS18880at 363.342 kb on - strand, within EX31_RS18880at 363.487 kb on + strandat 363.505 kb on - strand, within EX31_RS18885at 363.554 kb on - strand, within EX31_RS18885at 363.701 kb on + strand, within EX31_RS18885at 363.714 kb on - strand, within EX31_RS18885at 363.744 kb on - strand, within EX31_RS18885at 363.840 kb on + strand, within EX31_RS18885at 363.932 kb on + strand, within EX31_RS18885at 363.932 kb on + strand, within EX31_RS18885at 363.932 kb on + strand, within EX31_RS18885at 363.932 kb on + strand, within EX31_RS18885at 363.933 kb on - strand, within EX31_RS18885at 363.933 kb on - strand, within EX31_RS18885at 363.933 kb on - strand, within EX31_RS18885at 363.933 kb on - strand, within EX31_RS18885at 363.959 kb on + strand, within EX31_RS18885at 363.963 kb on - strand, within EX31_RS18885at 363.963 kb on - strand, within EX31_RS18885at 363.971 kb on - strand, within EX31_RS18885at 364.091 kb on - strand, within EX31_RS18885at 364.163 kb on + strandat 364.163 kb on + strandat 364.163 kb on + strandat 364.164 kb on - strandat 364.164 kb on - strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.166 kb on - strandat 364.166 kb on - strandat 364.194 kb on - strandat 364.252 kb on - strandat 364.270 kb on - strandat 364.270 kb on - strandat 364.270 kb on - strandat 364.336 kb on - strand, within EX31_RS18890at 364.336 kb on - strand, within EX31_RS18890at 364.336 kb on - strand, within EX31_RS18890at 364.402 kb on - strand, within EX31_RS18890at 364.402 kb on - strand, within EX31_RS18890at 364.430 kb on - strand, within EX31_RS18890at 364.436 kb on - strand, within EX31_RS18890at 364.436 kb on - strand, within EX31_RS18890at 364.436 kb on - strand, within EX31_RS18890at 364.456 kb on - strand, within EX31_RS18890at 364.471 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.543 kb on - strand, within EX31_RS18890at 364.543 kb on - strand, within EX31_RS18890at 364.545 kb on + strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.597 kb on - strand, within EX31_RS18890at 364.597 kb on - strand, within EX31_RS18890at 364.597 kb on - strand, within EX31_RS18890at 364.597 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.632 kb on - strand, within EX31_RS18890at 364.653 kb on - strand, within EX31_RS18890at 364.653 kb on - strand, within EX31_RS18890at 364.716 kb on - strand, within EX31_RS18890at 364.764 kb on - strandat 364.764 kb on - strandat 364.773 kb on - strandat 364.773 kb on - strandat 364.773 kb on - strandat 364.773 kb on - strandat 364.802 kb on - strandat 364.830 kb on - strandat 364.848 kb on + strandat 364.849 kb on - strandat 364.849 kb on - strandat 364.882 kb on + strandat 364.883 kb on - strandat 364.883 kb on - strandat 364.970 kb on + strandat 365.117 kb on - strandat 365.133 kb on - strandat 365.152 kb on + strandat 365.152 kb on + strandat 365.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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362,442 + EX31_RS18875 0.49 +0.7
362,442 + EX31_RS18875 0.49 +0.6
362,443 - EX31_RS18875 0.49 +2.1
362,513 - EX31_RS18875 0.60 -0.0
362,513 - EX31_RS18875 0.60 +1.0
362,616 + EX31_RS18875 0.77 +1.4
362,669 - EX31_RS18875 0.85 +0.1
362,688 + EX31_RS18875 0.88 -0.4
362,722 + -1.4
362,723 - +0.4
362,723 - +1.6
362,759 + -1.4
362,760 - -1.0
362,760 - -0.3
362,783 + +0.1
362,905 + EX31_RS18880 0.18 -0.0
362,905 + EX31_RS18880 0.18 -1.0
362,906 - EX31_RS18880 0.18 +0.2
362,906 - EX31_RS18880 0.18 -0.0
362,906 - EX31_RS18880 0.18 +0.7
362,977 - EX31_RS18880 0.29 -0.3
363,028 + EX31_RS18880 0.37 +0.5
363,028 + EX31_RS18880 0.37 -0.0
363,029 - EX31_RS18880 0.38 -1.6
363,029 - EX31_RS18880 0.38 -1.0
363,029 - EX31_RS18880 0.38 -0.6
363,151 + EX31_RS18880 0.57 -0.0
363,175 + EX31_RS18880 0.60 -2.2
363,175 + EX31_RS18880 0.60 -0.0
363,175 + EX31_RS18880 0.60 +0.4
363,175 + EX31_RS18880 0.60 -1.6
363,175 + EX31_RS18880 0.60 -0.3
363,176 - EX31_RS18880 0.60 -0.0
363,176 - EX31_RS18880 0.60 +1.7
363,176 - EX31_RS18880 0.60 -0.0
363,176 - EX31_RS18880 0.60 +0.6
363,290 - EX31_RS18880 0.78 +0.6
363,333 + EX31_RS18880 0.85 +1.0
363,341 + EX31_RS18880 0.86 -1.3
363,342 - EX31_RS18880 0.86 -0.2
363,487 + +0.9
363,505 - EX31_RS18885 0.11 -1.8
363,554 - EX31_RS18885 0.17 +1.0
363,701 + EX31_RS18885 0.36 +1.3
363,714 - EX31_RS18885 0.38 +0.1
363,744 - EX31_RS18885 0.42 +1.4
363,840 + EX31_RS18885 0.55 -1.6
363,932 + EX31_RS18885 0.67 -0.0
363,932 + EX31_RS18885 0.67 +0.7
363,932 + EX31_RS18885 0.67 +0.4
363,932 + EX31_RS18885 0.67 -0.6
363,933 - EX31_RS18885 0.67 +0.5
363,933 - EX31_RS18885 0.67 +0.2
363,933 - EX31_RS18885 0.67 +0.4
363,933 - EX31_RS18885 0.67 -0.5
363,959 + EX31_RS18885 0.70 +1.0
363,963 - EX31_RS18885 0.71 +0.6
363,963 - EX31_RS18885 0.71 -2.2
363,971 - EX31_RS18885 0.72 +1.2
364,091 - EX31_RS18885 0.87 +1.0
364,163 + -1.8
364,163 + +1.2
364,163 + -0.0
364,164 - -1.3
364,164 - +0.4
364,165 + -0.2
364,165 + +1.0
364,165 + +2.0
364,165 + -0.6
364,165 + +0.6
364,165 + -2.0
364,166 - -0.9
364,166 - -0.0
364,194 - -2.6
364,252 - +0.6
364,270 - -1.4
364,270 - -1.3
364,270 - -0.5
364,336 - EX31_RS18890 0.13 +0.4
364,336 - EX31_RS18890 0.13 +2.0
364,336 - EX31_RS18890 0.13 +1.2
364,402 - EX31_RS18890 0.25 -1.0
364,402 - EX31_RS18890 0.25 -0.0
364,430 - EX31_RS18890 0.30 +1.1
364,436 - EX31_RS18890 0.31 +0.6
364,436 - EX31_RS18890 0.31 +0.3
364,436 - EX31_RS18890 0.31 -0.5
364,456 - EX31_RS18890 0.35 -0.2
364,471 - EX31_RS18890 0.38 +0.0
364,492 - EX31_RS18890 0.42 -1.9
364,492 - EX31_RS18890 0.42 +1.3
364,492 - EX31_RS18890 0.42 -1.4
364,492 - EX31_RS18890 0.42 +1.0
364,492 - EX31_RS18890 0.42 +0.6
364,492 - EX31_RS18890 0.42 -1.0
364,543 - EX31_RS18890 0.51 -0.4
364,543 - EX31_RS18890 0.51 +0.5
364,545 + EX31_RS18890 0.52 +2.3
364,546 - EX31_RS18890 0.52 +1.9
364,546 - EX31_RS18890 0.52 -0.5
364,546 - EX31_RS18890 0.52 -0.9
364,546 - EX31_RS18890 0.52 +0.5
364,546 - EX31_RS18890 0.52 -0.3
364,597 - EX31_RS18890 0.62 +0.3
364,597 - EX31_RS18890 0.62 +1.8
364,597 - EX31_RS18890 0.62 +0.8
364,597 - EX31_RS18890 0.62 +0.6
364,631 - EX31_RS18890 0.68 -1.1
364,631 - EX31_RS18890 0.68 +1.0
364,631 - EX31_RS18890 0.68 -0.2
364,631 - EX31_RS18890 0.68 -2.1
364,631 - EX31_RS18890 0.68 +0.7
364,631 - EX31_RS18890 0.68 -0.2
364,632 - EX31_RS18890 0.68 +0.4
364,653 - EX31_RS18890 0.72 +0.4
364,653 - EX31_RS18890 0.72 -1.2
364,716 - EX31_RS18890 0.84 +0.8
364,764 - +0.3
364,764 - -0.1
364,773 - -1.9
364,773 - -0.4
364,773 - +0.1
364,773 - +1.1
364,802 - -0.3
364,830 - +0.3
364,848 + +0.6
364,849 - -1.6
364,849 - +1.0
364,882 + +0.2
364,883 - -0.4
364,883 - -2.5
364,970 + +0.5
365,117 - +0.7
365,133 - -1.0
365,152 + -0.3
365,152 + +0.6
365,153 - +1.1

Or see this region's nucleotide sequence