Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18865 and EX31_RS18870 overlap by 8 nucleotides EX31_RS18870 and EX31_RS18875 are separated by 213 nucleotides EX31_RS18875 and EX31_RS18880 are separated by 26 nucleotides
EX31_RS18865: EX31_RS18865 - heavy metal sensor histidine kinase, at 359,821 to 361,257
_RS18865
EX31_RS18870: EX31_RS18870 - heavy metal response regulator transcription factor, at 361,250 to 361,924
_RS18870
EX31_RS18875: EX31_RS18875 - hypothetical protein, at 362,138 to 362,761
_RS18875
EX31_RS18880: EX31_RS18880 - thioredoxin reductase, at 362,788 to 363,429
_RS18880
Position (kb) 361
362 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 360.258 kb on + strand, within EX31_RS18865 at 360.345 kb on + strand, within EX31_RS18865 at 360.345 kb on + strand, within EX31_RS18865 at 360.346 kb on - strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.370 kb on + strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.371 kb on - strand, within EX31_RS18865 at 360.395 kb on + strand, within EX31_RS18865 at 360.396 kb on - strand, within EX31_RS18865 at 360.420 kb on - strand, within EX31_RS18865 at 360.420 kb on - strand, within EX31_RS18865 at 360.420 kb on - strand, within EX31_RS18865 at 360.420 kb on - strand, within EX31_RS18865 at 360.421 kb on + strand, within EX31_RS18865 at 360.422 kb on - strand, within EX31_RS18865 at 360.422 kb on - strand, within EX31_RS18865 at 360.422 kb on - strand, within EX31_RS18865 at 360.422 kb on - strand, within EX31_RS18865 at 360.422 kb on - strand, within EX31_RS18865 at 360.597 kb on + strand, within EX31_RS18865 at 360.632 kb on + strand, within EX31_RS18865 at 360.640 kb on - strand, within EX31_RS18865 at 360.678 kb on - strand, within EX31_RS18865 at 360.709 kb on + strand, within EX31_RS18865 at 360.873 kb on + strand, within EX31_RS18865 at 360.873 kb on + strand, within EX31_RS18865 at 360.874 kb on - strand, within EX31_RS18865 at 360.953 kb on - strand, within EX31_RS18865 at 360.953 kb on - strand, within EX31_RS18865 at 361.005 kb on + strand, within EX31_RS18865 at 361.005 kb on + strand, within EX31_RS18865 at 361.006 kb on - strand, within EX31_RS18865 at 361.136 kb on + strand at 361.136 kb on + strand at 361.136 kb on + strand at 361.137 kb on - strand at 361.137 kb on - strand at 361.139 kb on + strand at 361.140 kb on - strand at 361.145 kb on + strand at 361.146 kb on - strand at 361.193 kb on - strand at 361.275 kb on + strand at 361.275 kb on + strand at 361.346 kb on - strand, within EX31_RS18870 at 361.362 kb on - strand, within EX31_RS18870 at 361.362 kb on - strand, within EX31_RS18870 at 361.362 kb on - strand, within EX31_RS18870 at 361.362 kb on - strand, within EX31_RS18870 at 361.362 kb on - strand, within EX31_RS18870 at 361.548 kb on + strand, within EX31_RS18870 at 361.549 kb on - strand, within EX31_RS18870 at 361.635 kb on + strand, within EX31_RS18870 at 361.635 kb on + strand, within EX31_RS18870 at 361.676 kb on + strand, within EX31_RS18870 at 361.845 kb on - strand, within EX31_RS18870 at 361.845 kb on - strand, within EX31_RS18870 at 361.845 kb on - strand, within EX31_RS18870 at 361.881 kb on + strand at 361.916 kb on + strand at 361.917 kb on - strand at 361.956 kb on + strand at 361.956 kb on + strand at 361.957 kb on - strand at 361.957 kb on - strand at 362.069 kb on - strand at 362.100 kb on - strand at 362.170 kb on - strand at 362.311 kb on + strand, within EX31_RS18875 at 362.311 kb on + strand, within EX31_RS18875 at 362.311 kb on + strand, within EX31_RS18875 at 362.312 kb on - strand, within EX31_RS18875 at 362.442 kb on + strand, within EX31_RS18875 at 362.442 kb on + strand, within EX31_RS18875 at 362.443 kb on - strand, within EX31_RS18875 at 362.513 kb on - strand, within EX31_RS18875 at 362.513 kb on - strand, within EX31_RS18875 at 362.616 kb on + strand, within EX31_RS18875 at 362.669 kb on - strand, within EX31_RS18875 at 362.688 kb on + strand, within EX31_RS18875 at 362.722 kb on + strand at 362.723 kb on - strand at 362.723 kb on - strand at 362.759 kb on + strand at 362.760 kb on - strand at 362.760 kb on - strand at 362.783 kb on + strand at 362.905 kb on + strand, within EX31_RS18880 at 362.905 kb on + strand, within EX31_RS18880 at 362.906 kb on - strand, within EX31_RS18880 at 362.906 kb on - strand, within EX31_RS18880 at 362.906 kb on - strand, within EX31_RS18880
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 360,258 + EX31_RS18865 0.30 -1.4 360,345 + EX31_RS18865 0.36 +2.8 360,345 + EX31_RS18865 0.36 +1.7 360,346 - EX31_RS18865 0.37 +0.3 360,370 + EX31_RS18865 0.38 -0.0 360,370 + EX31_RS18865 0.38 +1.0 360,370 + EX31_RS18865 0.38 -0.4 360,370 + EX31_RS18865 0.38 +1.0 360,370 + EX31_RS18865 0.38 -0.0 360,370 + EX31_RS18865 0.38 -1.6 360,370 + EX31_RS18865 0.38 +1.0 360,370 + EX31_RS18865 0.38 -0.4 360,370 + EX31_RS18865 0.38 +0.7 360,370 + EX31_RS18865 0.38 -0.4 360,371 - EX31_RS18865 0.38 +2.0 360,371 - EX31_RS18865 0.38 +0.2 360,371 - EX31_RS18865 0.38 +1.6 360,371 - EX31_RS18865 0.38 +1.6 360,371 - EX31_RS18865 0.38 +0.6 360,371 - EX31_RS18865 0.38 +1.7 360,371 - EX31_RS18865 0.38 -0.4 360,371 - EX31_RS18865 0.38 +2.6 360,371 - EX31_RS18865 0.38 +0.2 360,371 - EX31_RS18865 0.38 +1.6 360,371 - EX31_RS18865 0.38 +1.2 360,371 - EX31_RS18865 0.38 -2.2 360,371 - EX31_RS18865 0.38 +0.3 360,371 - EX31_RS18865 0.38 +1.5 360,371 - EX31_RS18865 0.38 -0.0 360,395 + EX31_RS18865 0.40 +2.6 360,396 - EX31_RS18865 0.40 +0.4 360,420 - EX31_RS18865 0.42 -0.4 360,420 - EX31_RS18865 0.42 -0.6 360,420 - EX31_RS18865 0.42 +2.2 360,420 - EX31_RS18865 0.42 -0.2 360,421 + EX31_RS18865 0.42 -0.0 360,422 - EX31_RS18865 0.42 +0.8 360,422 - EX31_RS18865 0.42 -1.6 360,422 - EX31_RS18865 0.42 -0.6 360,422 - EX31_RS18865 0.42 +1.5 360,422 - EX31_RS18865 0.42 +2.4 360,597 + EX31_RS18865 0.54 -2.0 360,632 + EX31_RS18865 0.56 +1.3 360,640 - EX31_RS18865 0.57 +3.0 360,678 - EX31_RS18865 0.60 +3.0 360,709 + EX31_RS18865 0.62 -1.1 360,873 + EX31_RS18865 0.73 +2.0 360,873 + EX31_RS18865 0.73 +1.0 360,874 - EX31_RS18865 0.73 +0.4 360,953 - EX31_RS18865 0.79 -1.6 360,953 - EX31_RS18865 0.79 +0.4 361,005 + EX31_RS18865 0.82 -2.0 361,005 + EX31_RS18865 0.82 -0.3 361,006 - EX31_RS18865 0.82 -0.0 361,136 + -0.3 361,136 + -0.3 361,136 + +0.7 361,137 - +0.7 361,137 - +0.7 361,139 + +1.0 361,140 - -0.2 361,145 + -1.0 361,146 - -1.3 361,193 - +0.0 361,275 + -1.4 361,275 + -1.3 361,346 - EX31_RS18870 0.14 -1.8 361,362 - EX31_RS18870 0.17 -1.8 361,362 - EX31_RS18870 0.17 +1.0 361,362 - EX31_RS18870 0.17 +0.6 361,362 - EX31_RS18870 0.17 -2.0 361,362 - EX31_RS18870 0.17 -1.3 361,548 + EX31_RS18870 0.44 -0.3 361,549 - EX31_RS18870 0.44 +2.0 361,635 + EX31_RS18870 0.57 -0.6 361,635 + EX31_RS18870 0.57 -1.8 361,676 + EX31_RS18870 0.63 -0.0 361,845 - EX31_RS18870 0.88 -1.2 361,845 - EX31_RS18870 0.88 +0.8 361,845 - EX31_RS18870 0.88 -0.8 361,881 + -0.3 361,916 + -1.0 361,917 - -0.0 361,956 + +2.7 361,956 + -2.1 361,957 - -0.6 361,957 - -0.6 362,069 - +1.0 362,100 - +1.0 362,170 - +0.6 362,311 + EX31_RS18875 0.28 -0.1 362,311 + EX31_RS18875 0.28 -0.0 362,311 + EX31_RS18875 0.28 +2.0 362,312 - EX31_RS18875 0.28 -2.5 362,442 + EX31_RS18875 0.49 +0.7 362,442 + EX31_RS18875 0.49 +0.6 362,443 - EX31_RS18875 0.49 +2.1 362,513 - EX31_RS18875 0.60 -0.0 362,513 - EX31_RS18875 0.60 +1.0 362,616 + EX31_RS18875 0.77 +1.4 362,669 - EX31_RS18875 0.85 +0.1 362,688 + EX31_RS18875 0.88 -0.4 362,722 + -1.4 362,723 - +0.4 362,723 - +1.6 362,759 + -1.4 362,760 - -1.0 362,760 - -0.3 362,783 + +0.1 362,905 + EX31_RS18880 0.18 -0.0 362,905 + EX31_RS18880 0.18 -1.0 362,906 - EX31_RS18880 0.18 +0.2 362,906 - EX31_RS18880 0.18 -0.0 362,906 - EX31_RS18880 0.18 +0.7
Or see this region's nucleotide sequence