Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17450 and EX31_RS17455 are separated by 286 nucleotides EX31_RS17455 and EX31_RS17460 overlap by 8 nucleotides EX31_RS17460 and EX31_RS17465 are separated by 245 nucleotides EX31_RS17465 and EX31_RS17470 are separated by 83 nucleotides
EX31_RS17450: EX31_RS17450 - ATP-independent periplasmic protein-refolding chaperone, at 42,192 to 42,701
_RS17450
EX31_RS17455: EX31_RS17455 - carbon starvation protein A, at 42,988 to 45,054
_RS17455
EX31_RS17460: EX31_RS17460 - putative selenoprotein, at 45,047 to 45,352
_RS17460
EX31_RS17465: EX31_RS17465 - hypothetical protein, at 45,598 to 45,933
_RS17465
EX31_RS17470: EX31_RS17470 - nitrogen assimilation transcriptional regulator, at 46,017 to 46,943
_RS17470
Position (kb) 42
43
44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 42.042 kb on - strand at 42.042 kb on - strand at 42.095 kb on - strand at 42.110 kb on + strand at 42.113 kb on + strand at 42.113 kb on + strand at 42.114 kb on - strand at 42.114 kb on - strand at 42.191 kb on + strand at 42.192 kb on - strand at 42.192 kb on - strand at 42.197 kb on + strand at 42.327 kb on - strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.518 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.579 kb on + strand, within EX31_RS17450 at 42.579 kb on + strand, within EX31_RS17450 at 42.580 kb on - strand, within EX31_RS17450 at 42.580 kb on - strand, within EX31_RS17450 at 42.699 kb on + strand at 42.754 kb on - strand at 42.831 kb on + strand at 42.840 kb on - strand at 42.852 kb on - strand at 42.861 kb on - strand at 42.873 kb on + strand at 42.914 kb on + strand at 42.915 kb on - strand at 42.915 kb on - strand at 42.922 kb on + strand at 42.922 kb on + strand at 42.922 kb on + strand at 42.922 kb on + strand at 42.923 kb on - strand at 42.923 kb on - strand at 42.923 kb on - strand at 42.936 kb on + strand at 42.936 kb on + strand at 42.937 kb on - strand at 42.937 kb on - strand at 42.937 kb on - strand at 42.940 kb on + strand at 42.940 kb on + strand at 42.972 kb on + strand at 42.972 kb on + strand at 42.982 kb on + strand at 42.982 kb on + strand at 42.983 kb on - strand at 42.983 kb on - strand at 42.983 kb on - strand at 42.983 kb on - strand at 42.983 kb on - strand at 43.121 kb on - strand at 43.141 kb on + strand at 43.142 kb on - strand at 43.225 kb on + strand, within EX31_RS17455 at 43.225 kb on + strand, within EX31_RS17455 at 43.226 kb on - strand, within EX31_RS17455 at 43.503 kb on + strand, within EX31_RS17455 at 43.503 kb on + strand, within EX31_RS17455 at 43.503 kb on + strand, within EX31_RS17455 at 43.504 kb on - strand, within EX31_RS17455 at 43.602 kb on + strand, within EX31_RS17455 at 43.602 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.614 kb on + strand, within EX31_RS17455 at 43.614 kb on + strand, within EX31_RS17455 at 43.615 kb on - strand, within EX31_RS17455 at 43.734 kb on + strand, within EX31_RS17455 at 43.774 kb on + strand, within EX31_RS17455 at 43.774 kb on + strand, within EX31_RS17455 at 43.774 kb on + strand, within EX31_RS17455 at 43.775 kb on - strand, within EX31_RS17455 at 43.829 kb on - strand, within EX31_RS17455 at 43.851 kb on - strand, within EX31_RS17455 at 43.977 kb on + strand, within EX31_RS17455 at 43.978 kb on - strand, within EX31_RS17455 at 43.978 kb on - strand, within EX31_RS17455 at 43.984 kb on - strand, within EX31_RS17455 at 44.155 kb on + strand, within EX31_RS17455 at 44.156 kb on - strand, within EX31_RS17455 at 44.156 kb on - strand, within EX31_RS17455 at 44.414 kb on + strand, within EX31_RS17455 at 44.419 kb on - strand, within EX31_RS17455 at 44.419 kb on - strand, within EX31_RS17455 at 44.460 kb on + strand, within EX31_RS17455 at 44.461 kb on - strand, within EX31_RS17455 at 44.603 kb on + strand, within EX31_RS17455 at 44.603 kb on + strand, within EX31_RS17455 at 44.604 kb on - strand, within EX31_RS17455 at 44.607 kb on + strand, within EX31_RS17455 at 44.607 kb on + strand, within EX31_RS17455 at 44.607 kb on + strand, within EX31_RS17455 at 44.607 kb on + strand, within EX31_RS17455 at 44.607 kb on + strand, within EX31_RS17455 at 44.607 kb on + strand, within EX31_RS17455 at 44.608 kb on - strand, within EX31_RS17455 at 44.608 kb on - strand, within EX31_RS17455 at 44.608 kb on - strand, within EX31_RS17455 at 44.634 kb on + strand, within EX31_RS17455 at 44.730 kb on + strand, within EX31_RS17455 at 44.730 kb on + strand, within EX31_RS17455 at 44.731 kb on - strand, within EX31_RS17455 at 44.743 kb on - strand, within EX31_RS17455 at 44.743 kb on - strand, within EX31_RS17455 at 44.743 kb on - strand, within EX31_RS17455 at 45.027 kb on - strand at 45.067 kb on - strand at 45.094 kb on - strand, within EX31_RS17460 at 45.172 kb on - strand, within EX31_RS17460 at 45.172 kb on - strand, within EX31_RS17460 at 45.227 kb on + strand, within EX31_RS17460 at 45.227 kb on + strand, within EX31_RS17460 at 45.227 kb on + strand, within EX31_RS17460 at 45.227 kb on + strand, within EX31_RS17460 at 45.361 kb on + strand at 45.394 kb on + strand at 45.464 kb on - strand at 45.464 kb on - strand at 45.542 kb on + strand at 45.542 kb on + strand at 45.543 kb on - strand at 45.543 kb on - strand at 45.556 kb on + strand at 45.562 kb on + strand at 45.563 kb on - strand at 45.597 kb on + strand at 45.597 kb on + strand at 45.598 kb on - strand at 45.598 kb on - strand at 45.598 kb on - strand at 45.645 kb on + strand, within EX31_RS17465 at 45.645 kb on + strand, within EX31_RS17465 at 45.650 kb on + strand, within EX31_RS17465 at 45.651 kb on - strand, within EX31_RS17465 at 45.651 kb on - strand, within EX31_RS17465 at 45.651 kb on - strand, within EX31_RS17465 at 45.694 kb on + strand, within EX31_RS17465 at 45.694 kb on + strand, within EX31_RS17465 at 45.913 kb on + strand at 45.913 kb on + strand at 45.913 kb on + strand at 45.913 kb on + strand at 45.913 kb on + strand at 45.913 kb on + strand at 45.914 kb on - strand at 45.914 kb on - strand at 45.914 kb on - strand at 45.914 kb on - strand at 45.932 kb on - strand at 45.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 42,042 - -0.1 42,042 - -2.6 42,095 - -0.7 42,110 + +0.1 42,113 + -0.3 42,113 + -0.1 42,114 - +0.2 42,114 - +0.1 42,191 + +0.9 42,192 - -2.3 42,192 - -0.7 42,197 + +0.9 42,327 - EX31_RS17450 0.26 +0.4 42,341 + EX31_RS17450 0.29 +1.9 42,341 + EX31_RS17450 0.29 +0.6 42,341 + EX31_RS17450 0.29 -0.1 42,341 + EX31_RS17450 0.29 -0.6 42,341 + EX31_RS17450 0.29 -0.7 42,341 + EX31_RS17450 0.29 -3.0 42,341 + EX31_RS17450 0.29 +0.5 42,342 - EX31_RS17450 0.29 -0.6 42,342 - EX31_RS17450 0.29 -0.8 42,342 - EX31_RS17450 0.29 +1.9 42,342 - EX31_RS17450 0.29 -0.7 42,342 - EX31_RS17450 0.29 -1.1 42,342 - EX31_RS17450 0.29 -1.9 42,342 - EX31_RS17450 0.29 +0.3 42,342 - EX31_RS17450 0.29 -1.9 42,518 + EX31_RS17450 0.64 -1.7 42,545 + EX31_RS17450 0.69 -0.9 42,545 + EX31_RS17450 0.69 +0.9 42,545 + EX31_RS17450 0.69 -1.5 42,545 + EX31_RS17450 0.69 +0.9 42,579 + EX31_RS17450 0.76 +3.2 42,579 + EX31_RS17450 0.76 +0.1 42,580 - EX31_RS17450 0.76 -0.7 42,580 - EX31_RS17450 0.76 +0.6 42,699 + +0.7 42,754 - +0.2 42,831 + -1.5 42,840 - +0.7 42,852 - +2.2 42,861 - +0.1 42,873 + -0.1 42,914 + +1.9 42,915 - -0.5 42,915 - +0.6 42,922 + +0.4 42,922 + -0.7 42,922 + +0.1 42,922 + +1.2 42,923 - +0.3 42,923 - +0.6 42,923 - -0.0 42,936 + +0.9 42,936 + -1.7 42,937 - +1.7 42,937 - -0.5 42,937 - +1.3 42,940 + -0.1 42,940 + +1.4 42,972 + -1.7 42,972 + +0.5 42,982 + -0.5 42,982 + +0.6 42,983 - +0.5 42,983 - +1.1 42,983 - +0.1 42,983 - -1.1 42,983 - +0.6 43,121 - -1.8 43,141 + -0.5 43,142 - +1.7 43,225 + EX31_RS17455 0.11 -0.1 43,225 + EX31_RS17455 0.11 +1.3 43,226 - EX31_RS17455 0.12 -1.7 43,503 + EX31_RS17455 0.25 -0.7 43,503 + EX31_RS17455 0.25 +0.1 43,503 + EX31_RS17455 0.25 -0.7 43,504 - EX31_RS17455 0.25 +1.4 43,602 + EX31_RS17455 0.30 -0.6 43,602 + EX31_RS17455 0.30 +0.4 43,612 + EX31_RS17455 0.30 +0.9 43,612 + EX31_RS17455 0.30 -0.1 43,612 + EX31_RS17455 0.30 +0.1 43,612 + EX31_RS17455 0.30 -1.7 43,612 + EX31_RS17455 0.30 +0.3 43,612 + EX31_RS17455 0.30 -0.3 43,612 + EX31_RS17455 0.30 +1.2 43,612 + EX31_RS17455 0.30 -2.1 43,612 + EX31_RS17455 0.30 -2.8 43,612 + EX31_RS17455 0.30 -0.9 43,612 + EX31_RS17455 0.30 -0.1 43,612 + EX31_RS17455 0.30 +0.7 43,612 + EX31_RS17455 0.30 -2.1 43,612 + EX31_RS17455 0.30 -1.5 43,612 + EX31_RS17455 0.30 +1.4 43,612 + EX31_RS17455 0.30 +0.4 43,612 + EX31_RS17455 0.30 -0.1 43,612 + EX31_RS17455 0.30 +1.3 43,612 + EX31_RS17455 0.30 +0.3 43,612 + EX31_RS17455 0.30 -1.1 43,613 - EX31_RS17455 0.30 -0.7 43,613 - EX31_RS17455 0.30 +0.4 43,613 - EX31_RS17455 0.30 -0.9 43,613 - EX31_RS17455 0.30 -1.5 43,613 - EX31_RS17455 0.30 -0.1 43,613 - EX31_RS17455 0.30 -0.5 43,613 - EX31_RS17455 0.30 +0.5 43,613 - EX31_RS17455 0.30 -0.6 43,613 - EX31_RS17455 0.30 +0.9 43,613 - EX31_RS17455 0.30 +0.4 43,613 - EX31_RS17455 0.30 +2.4 43,613 - EX31_RS17455 0.30 +1.4 43,613 - EX31_RS17455 0.30 +0.9 43,613 - EX31_RS17455 0.30 +0.9 43,614 + EX31_RS17455 0.30 -1.7 43,614 + EX31_RS17455 0.30 -0.3 43,615 - EX31_RS17455 0.30 +0.9 43,734 + EX31_RS17455 0.36 -0.3 43,774 + EX31_RS17455 0.38 +1.1 43,774 + EX31_RS17455 0.38 -0.0 43,774 + EX31_RS17455 0.38 +0.6 43,775 - EX31_RS17455 0.38 +0.9 43,829 - EX31_RS17455 0.41 -0.9 43,851 - EX31_RS17455 0.42 +0.9 43,977 + EX31_RS17455 0.48 +2.2 43,978 - EX31_RS17455 0.48 +0.5 43,978 - EX31_RS17455 0.48 -2.0 43,984 - EX31_RS17455 0.48 -0.7 44,155 + EX31_RS17455 0.56 +0.9 44,156 - EX31_RS17455 0.57 +1.6 44,156 - EX31_RS17455 0.57 -0.2 44,414 + EX31_RS17455 0.69 -2.6 44,419 - EX31_RS17455 0.69 +0.4 44,419 - EX31_RS17455 0.69 -0.1 44,460 + EX31_RS17455 0.71 +0.1 44,461 - EX31_RS17455 0.71 +2.9 44,603 + EX31_RS17455 0.78 +2.2 44,603 + EX31_RS17455 0.78 +1.3 44,604 - EX31_RS17455 0.78 -0.1 44,607 + EX31_RS17455 0.78 +1.4 44,607 + EX31_RS17455 0.78 +0.0 44,607 + EX31_RS17455 0.78 +1.3 44,607 + EX31_RS17455 0.78 -2.3 44,607 + EX31_RS17455 0.78 -0.7 44,607 + EX31_RS17455 0.78 -1.5 44,608 - EX31_RS17455 0.78 +2.4 44,608 - EX31_RS17455 0.78 -0.1 44,608 - EX31_RS17455 0.78 -2.1 44,634 + EX31_RS17455 0.80 +1.1 44,730 + EX31_RS17455 0.84 +0.9 44,730 + EX31_RS17455 0.84 +1.9 44,731 - EX31_RS17455 0.84 -1.0 44,743 - EX31_RS17455 0.85 -0.3 44,743 - EX31_RS17455 0.85 +0.5 44,743 - EX31_RS17455 0.85 +0.9 45,027 - -2.6 45,067 - +0.3 45,094 - EX31_RS17460 0.15 -0.1 45,172 - EX31_RS17460 0.41 +0.9 45,172 - EX31_RS17460 0.41 +1.4 45,227 + EX31_RS17460 0.59 -0.1 45,227 + EX31_RS17460 0.59 +0.0 45,227 + EX31_RS17460 0.59 +2.7 45,227 + EX31_RS17460 0.59 +0.1 45,361 + +0.9 45,394 + +0.2 45,464 - +0.1 45,464 - -1.5 45,542 + -0.5 45,542 + -1.5 45,543 - -0.6 45,543 - +0.1 45,556 + -1.7 45,562 + +1.6 45,563 - -0.0 45,597 + +0.1 45,597 + -0.6 45,598 - -1.1 45,598 - +1.5 45,598 - -0.7 45,645 + EX31_RS17465 0.14 -0.7 45,645 + EX31_RS17465 0.14 -0.1 45,650 + EX31_RS17465 0.15 -0.9 45,651 - EX31_RS17465 0.16 +1.4 45,651 - EX31_RS17465 0.16 +0.2 45,651 - EX31_RS17465 0.16 +3.3 45,694 + EX31_RS17465 0.29 +1.9 45,694 + EX31_RS17465 0.29 +1.4 45,913 + -0.1 45,913 + -0.8 45,913 + +0.6 45,913 + -0.1 45,913 + +0.4 45,913 + -1.6 45,914 - +1.2 45,914 - -0.9 45,914 - +0.9 45,914 - -1.5 45,932 - +3.2 45,963 - -0.7
Or see this region's nucleotide sequence